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OpenMS
ANALYSIS
OPENSWATH
OPENSWATHALGO
DATAACCESS
TransitionHelper.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Witold Wolski $
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// $Authors: Witold Wolski $
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// --------------------------------------------------------------------------
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#ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H
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#define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H
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#include <map>
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#include <vector>
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#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/OpenSwathAlgoConfig.h>
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#include <
OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h
>
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#include <
OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/Transitions.h
>
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namespace
OpenSwath
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{
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struct
OPENSWATHALGO_DLLAPI
TransitionHelper
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{
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static
void
convert(
LightTargetedExperiment
& lte,
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std::map<std::string,
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std::vector<OpenSwath::LightTransition> >& transmap);
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// spiegel
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static
bool
findPeptide(
const
LightTargetedExperiment
& lte,
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const
std::string& peptideRef,
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LightPeptide
& pep);
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};
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}
//end namespace
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#endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H
OpenSwath::TransitionHelper
Definition:
TransitionHelper.h:49
TransitionExperiment.h
Transitions.h
OpenSwath::LightPeptide
Definition:
TransitionExperiment.h:99
OpenSwath::LightTargetedExperiment
Definition:
TransitionExperiment.h:120
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:19:22 using doxygen 1.8.5