AccurateMassSearchEngine() | AccurateMassSearchEngine | |
begin_ | ProgressLogger | mutableprotected |
check_defaults_ | DefaultParamHandler | protected |
CMD enum value | ProgressLogger | |
computeCosineSim_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y) | AccurateMassSearchEngine | private |
computeEuclideanDist_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y) | AccurateMassSearchEngine | private |
computeIsotopePatternSimilarity_(const Feature &, const EmpiricalFormula &) | AccurateMassSearchEngine | private |
computeNeutralMassFromAdduct_(const DoubleReal &, const String &, DoubleReal &, DoubleReal &) | AccurateMassSearchEngine | private |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
dlg_ | ProgressLogger | mutableprotected |
end_ | ProgressLogger | mutableprotected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
exportMzTab_(const QueryResultsTable &, MzTab &) | AccurateMassSearchEngine | private |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
hmdb_properties_mapping_ | AccurateMassSearchEngine | private |
HMDBPropsMapping typedef | AccurateMassSearchEngine | private |
ion_mode_ | AccurateMassSearchEngine | private |
iso_similarity_ | AccurateMassSearchEngine | private |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
mass_error_unit_ | AccurateMassSearchEngine | private |
mass_error_value_ | AccurateMassSearchEngine | private |
mass_formula_mapping_ | AccurateMassSearchEngine | private |
mass_id_mapping_ | AccurateMassSearchEngine | private |
MassIDMapping typedef | AccurateMassSearchEngine | private |
masskey_table_ | AccurateMassSearchEngine | private |
neg_adducts_ | AccurateMassSearchEngine | private |
neg_adducts_fname_ | AccurateMassSearchEngine | private |
NONE enum value | ProgressLogger | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
parseAdductsFile_(const String &) | AccurateMassSearchEngine | private |
parseAdductString_(const String &, std::vector< String > &) | AccurateMassSearchEngine | private |
parseMappingFile_(const String &) | AccurateMassSearchEngine | private |
parseStructMappingFile_(const String &) | AccurateMassSearchEngine | private |
pos_adducts_ | AccurateMassSearchEngine | private |
pos_adducts_fname_ | AccurateMassSearchEngine | private |
ProgressLogger() | ProgressLogger | |
queryByConsensusFeature(const ConsensusFeature &, const Size &, const Size &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine | |
queryByFeature(const Feature &, const Size &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine | |
queryByMass(const DoubleReal &, const DoubleReal &, std::vector< AccurateMassSearchResult > &) | AccurateMassSearchEngine | |
QueryResultsTable typedef | AccurateMassSearchEngine | private |
recursion_depth_ | ProgressLogger | protectedstatic |
run(const FeatureMap<> &, MzTab &) | AccurateMassSearchEngine | |
run(const ConsensusMap &, MzTab &) | AccurateMassSearchEngine | |
searchMass_(const DoubleReal &, std::vector< Size > &hit_indices) | AccurateMassSearchEngine | private |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
stop_watch_ | ProgressLogger | mutableprotected |
subsections_ | DefaultParamHandler | protected |
type_ | ProgressLogger | mutableprotected |
updateMembers_() | AccurateMassSearchEngine | protectedvirtual |
value_ | ProgressLogger | mutableprotected |
warn_empty_defaults_ | DefaultParamHandler | protected |
~AccurateMassSearchEngine() | AccurateMassSearchEngine | virtual |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~ProgressLogger() | ProgressLogger | |