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SuffixArrayTrypticSeqan.h
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31 // $Maintainer: Clemens Groepl,Andreas Bertsch$
32 // $Authors: Chris Bauer $
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34 
35 
36 
37 #ifndef OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
38 #define OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
39 
41 
42 namespace OpenMS
43 {
44 
52  class OPENMS_DLLAPI SuffixArrayTrypticSeqan :
53  public SuffixArraySeqan
54  {
55 
56 public:
57 
66  SuffixArrayTrypticSeqan(const String & st, const String & filename, const WeightWrapper::WEIGHTMODE weight_mode = WeightWrapper::MONO);
67 
74  bool isDigestingEnd(const char aa1, const char aa2) const;
75 
76 
77  };
78 }
79 
80 #endif //OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
A more convenient string class.
Definition: String.h:56
Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ...
Definition: SuffixArraySeqan.h:58
Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ...
Definition: SuffixArrayTrypticSeqan.h:52
WEIGHTMODE
Definition: WeightWrapper.h:55
Definition: WeightWrapper.h:55

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:21 using doxygen 1.8.5