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IonizationSimulation Member List

This is the complete list of members for IonizationSimulation, including all inherited members.

basic_residues_IonizationSimulationprivate
begin_ProgressLoggermutableprotected
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
countIonizedResidues_(const AASequence &) const IonizationSimulationprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
ESI enum valueIonizationSimulation
esi_adducts_IonizationSimulationprivate
esi_impurity_probabilities_IonizationSimulationprivate
esi_probability_IonizationSimulationprivate
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
ionization_type_IonizationSimulationprivate
IonizationSimulation(const SimRandomNumberGenerator &)IonizationSimulation
IonizationSimulation(const IonizationSimulation &source)IonizationSimulation
IonizationSimulation()IonizationSimulationprivate
IonizationType enum nameIonizationSimulation
ionize(FeatureMapSim &features, ConsensusMap &charge_consensus, MSSimExperiment &experiment)IonizationSimulation
ionizeEsi_(FeatureMapSim &, ConsensusMap &charge_consensus)IonizationSimulationprivate
ionizeMaldi_(FeatureMapSim &, ConsensusMap &charge_consensus)IonizationSimulationprivate
isFeatureValid_(const Feature &feature)IonizationSimulationinlineprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
MALDI enum valueIonizationSimulation
maldi_probabilities_IonizationSimulationprivate
max_adduct_charge_IonizationSimulationprivate
maximal_mz_measurement_limit_IonizationSimulationprivate
minimal_mz_measurement_limit_IonizationSimulationprivate
NONE enum valueProgressLogger
operator=(const IonizationSimulation &source)IonizationSimulation
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
rnd_gen_IonizationSimulationprotected
setDefaultParams_()IonizationSimulationprivate
setFeatureProperties_(Feature &f, const DoubleReal &adduct_mass, const String &adduct_formula, const SimChargeType charge, const SimIntensityType new_intensity, const Size parent_index)IonizationSimulationprivate
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()IonizationSimulationprivatevirtual
value_ProgressLoggermutableprotected
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~IonizationSimulation()IonizationSimulationvirtual
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5