addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const | FeaFiModule< PeakType, FeatureType > | inline |
algorithm_ | ModelFitter< PeakType, FeatureType > | protected |
Base typedef | ModelFitter< PeakType, FeatureType > | |
basic_stat_ | ModelFitter< PeakType, FeatureType > | protected |
ChargedIndexSet typedef | FeatureFinderDefs | |
ChargeType typedef | ModelFitter< PeakType, FeatureType > | |
check_defaults_ | DefaultParamHandler | protected |
CoordinateType typedef | ModelFitter< PeakType, FeatureType > | |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
deltaAbsError_ | ModelFitter< PeakType, FeatureType > | protected |
deltaRelError_ | ModelFitter< PeakType, FeatureType > | protected |
doProjectionDim_(const Int dim, const ChargedIndexSet &index_set, RawDataArrayType &set) const | ModelFitter< PeakType, FeatureType > | inlineprotected |
error_name_ | DefaultParamHandler | protected |
evaluate_(const IndexSet &set) const | ModelFitter< PeakType, FeatureType > | inlineprotected |
FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | FeaFiModule< PeakType, FeatureType > | inline |
FeatureMapType typedef | FeaFiModule< PeakType, FeatureType > | |
features_ | FeaFiModule< PeakType, FeatureType > | protected |
ff_ | FeaFiModule< PeakType, FeatureType > | protected |
first_mz_model_ | ModelFitter< PeakType, FeatureType > | protected |
fit(const ChargedIndexSet &index_set) | ModelFitter< PeakType, FeatureType > | inline |
fitMZ_(InterpolationModel *&model, const ChargeType &charge) const | ModelFitter< PeakType, FeatureType > | inlineprotected |
fitMZLoop_(const ChargedIndexSet &set, const ChargeType &charge) | ModelFitter< PeakType, FeatureType > | inlineprotected |
fitRT_(InterpolationModel *&model) const | ModelFitter< PeakType, FeatureType > | inlineprotected |
Flag enum name | FeatureFinderDefs | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getNextMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getNextRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | inline |
getParameters() const | DefaultParamHandler | |
getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPeakMz(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPeakRt(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPrevMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPrevRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | inline |
getSubsections() const | DefaultParamHandler | |
IndexPair typedef | FeatureFinderDefs | |
IndexSet typedef | FeatureFinderDefs | |
IndexSetIter typedef | ModelFitter< PeakType, FeatureType > | |
IntensityType typedef | ModelFitter< PeakType, FeatureType > | |
interpolation_step_mz_ | ModelFitter< PeakType, FeatureType > | protected |
interpolation_step_rt_ | ModelFitter< PeakType, FeatureType > | protected |
iso_stdev_first_ | ModelFitter< PeakType, FeatureType > | protected |
iso_stdev_last_ | ModelFitter< PeakType, FeatureType > | protected |
iso_stdev_stepsize_ | ModelFitter< PeakType, FeatureType > | protected |
isotope_stdev_ | ModelFitter< PeakType, FeatureType > | protected |
last_mz_model_ | ModelFitter< PeakType, FeatureType > | protected |
map_ | FeaFiModule< PeakType, FeatureType > | protected |
MapType typedef | FeaFiModule< PeakType, FeatureType > | |
max_isotope_ | ModelFitter< PeakType, FeatureType > | protected |
max_iteration_ | ModelFitter< PeakType, FeatureType > | protected |
model2D_ | ModelFitter< PeakType, FeatureType > | protected |
ModelFitter(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | ModelFitter< PeakType, FeatureType > | inline |
ModelFitter() | ModelFitter< PeakType, FeatureType > | private |
ModelFitter(const ModelFitter &) | ModelFitter< PeakType, FeatureType > | private |
monoisotopic_mz_ | ModelFitter< PeakType, FeatureType > | protected |
MZ enum value | ModelFitter< PeakType, FeatureType > | |
mz_input_data_ | ModelFitter< PeakType, FeatureType > | protected |
mz_stat_ | ModelFitter< PeakType, FeatureType > | protected |
operator=(const ModelFitter &) | ModelFitter< PeakType, FeatureType > | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
quality_mz_ | ModelFitter< PeakType, FeatureType > | protected |
quality_rt_ | ModelFitter< PeakType, FeatureType > | protected |
QualityType typedef | ModelFitter< PeakType, FeatureType > | |
RawDataArrayType typedef | ModelFitter< PeakType, FeatureType > | |
RT enum value | ModelFitter< PeakType, FeatureType > | |
rt_input_data_ | ModelFitter< PeakType, FeatureType > | protected |
rt_stat_ | ModelFitter< PeakType, FeatureType > | protected |
setMonoIsotopicMass(CoordinateType mz) | ModelFitter< PeakType, FeatureType > | inline |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
SpectrumType typedef | FeaFiModule< PeakType, FeatureType > | |
subsections_ | DefaultParamHandler | protected |
tolerance_stdev_box_ | ModelFitter< PeakType, FeatureType > | protected |
UNUSED enum value | FeatureFinderDefs | |
updateMembers_() | ModelFitter< PeakType, FeatureType > | inlineprotectedvirtual |
USED enum value | FeatureFinderDefs | |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~FeaFiModule() | FeaFiModule< PeakType, FeatureType > | inlinevirtual |
~ModelFitter() | ModelFitter< PeakType, FeatureType > | inlinevirtual |