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ModelFitter< PeakType, FeatureType > Member List

This is the complete list of members for ModelFitter< PeakType, FeatureType >, including all inherited members.

addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const FeaFiModule< PeakType, FeatureType >inline
algorithm_ModelFitter< PeakType, FeatureType >protected
Base typedefModelFitter< PeakType, FeatureType >
basic_stat_ModelFitter< PeakType, FeatureType >protected
ChargedIndexSet typedefFeatureFinderDefs
ChargeType typedefModelFitter< PeakType, FeatureType >
check_defaults_DefaultParamHandlerprotected
CoordinateType typedefModelFitter< PeakType, FeatureType >
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
deltaAbsError_ModelFitter< PeakType, FeatureType >protected
deltaRelError_ModelFitter< PeakType, FeatureType >protected
doProjectionDim_(const Int dim, const ChargedIndexSet &index_set, RawDataArrayType &set) const ModelFitter< PeakType, FeatureType >inlineprotected
error_name_DefaultParamHandlerprotected
evaluate_(const IndexSet &set) const ModelFitter< PeakType, FeatureType >inlineprotected
FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff)FeaFiModule< PeakType, FeatureType >inline
FeatureMapType typedefFeaFiModule< PeakType, FeatureType >
features_FeaFiModule< PeakType, FeatureType >protected
ff_FeaFiModule< PeakType, FeatureType >protected
first_mz_model_ModelFitter< PeakType, FeatureType >protected
fit(const ChargedIndexSet &index_set)ModelFitter< PeakType, FeatureType >inline
fitMZ_(InterpolationModel *&model, const ChargeType &charge) const ModelFitter< PeakType, FeatureType >inlineprotected
fitMZLoop_(const ChargedIndexSet &set, const ChargeType &charge)ModelFitter< PeakType, FeatureType >inlineprotected
fitRT_(InterpolationModel *&model) const ModelFitter< PeakType, FeatureType >inlineprotected
Flag enum nameFeatureFinderDefs
getDefaults() const DefaultParamHandler
getName() const DefaultParamHandler
getNextMz(FeatureFinderDefs::IndexPair &index) const FeaFiModule< PeakType, FeatureType >inline
getNextRt(FeatureFinderDefs::IndexPair &index)FeaFiModule< PeakType, FeatureType >inline
getParameters() const DefaultParamHandler
getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const FeaFiModule< PeakType, FeatureType >inline
getPeakMz(const FeatureFinderDefs::IndexPair &index) const FeaFiModule< PeakType, FeatureType >inline
getPeakRt(const FeatureFinderDefs::IndexPair &index) const FeaFiModule< PeakType, FeatureType >inline
getPrevMz(FeatureFinderDefs::IndexPair &index) const FeaFiModule< PeakType, FeatureType >inline
getPrevRt(FeatureFinderDefs::IndexPair &index)FeaFiModule< PeakType, FeatureType >inline
getSubsections() const DefaultParamHandler
IndexPair typedefFeatureFinderDefs
IndexSet typedefFeatureFinderDefs
IndexSetIter typedefModelFitter< PeakType, FeatureType >
IntensityType typedefModelFitter< PeakType, FeatureType >
interpolation_step_mz_ModelFitter< PeakType, FeatureType >protected
interpolation_step_rt_ModelFitter< PeakType, FeatureType >protected
iso_stdev_first_ModelFitter< PeakType, FeatureType >protected
iso_stdev_last_ModelFitter< PeakType, FeatureType >protected
iso_stdev_stepsize_ModelFitter< PeakType, FeatureType >protected
isotope_stdev_ModelFitter< PeakType, FeatureType >protected
last_mz_model_ModelFitter< PeakType, FeatureType >protected
map_FeaFiModule< PeakType, FeatureType >protected
MapType typedefFeaFiModule< PeakType, FeatureType >
max_isotope_ModelFitter< PeakType, FeatureType >protected
max_iteration_ModelFitter< PeakType, FeatureType >protected
model2D_ModelFitter< PeakType, FeatureType >protected
ModelFitter(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff)ModelFitter< PeakType, FeatureType >inline
ModelFitter()ModelFitter< PeakType, FeatureType >private
ModelFitter(const ModelFitter &)ModelFitter< PeakType, FeatureType >private
monoisotopic_mz_ModelFitter< PeakType, FeatureType >protected
MZ enum valueModelFitter< PeakType, FeatureType >
mz_input_data_ModelFitter< PeakType, FeatureType >protected
mz_stat_ModelFitter< PeakType, FeatureType >protected
operator=(const ModelFitter &)ModelFitter< PeakType, FeatureType >private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
quality_mz_ModelFitter< PeakType, FeatureType >protected
quality_rt_ModelFitter< PeakType, FeatureType >protected
QualityType typedefModelFitter< PeakType, FeatureType >
RawDataArrayType typedefModelFitter< PeakType, FeatureType >
RT enum valueModelFitter< PeakType, FeatureType >
rt_input_data_ModelFitter< PeakType, FeatureType >protected
rt_stat_ModelFitter< PeakType, FeatureType >protected
setMonoIsotopicMass(CoordinateType mz)ModelFitter< PeakType, FeatureType >inline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
SpectrumType typedefFeaFiModule< PeakType, FeatureType >
subsections_DefaultParamHandlerprotected
tolerance_stdev_box_ModelFitter< PeakType, FeatureType >protected
UNUSED enum valueFeatureFinderDefs
updateMembers_()ModelFitter< PeakType, FeatureType >inlineprotectedvirtual
USED enum valueFeatureFinderDefs
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~FeaFiModule()FeaFiModule< PeakType, FeatureType >inlinevirtual
~ModelFitter()ModelFitter< PeakType, FeatureType >inlinevirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5