addConvexHull(const FeatureFinderDefs::IndexSet &set, Feature &feature) const | FeaFiModule< PeakType, FeatureType > | inline |
Base typedef | SimpleExtender< PeakType, FeatureType > | |
boundary_ | SimpleExtender< PeakType, FeatureType > | protected |
ChargedIndexSet typedef | FeatureFinderDefs | |
check_defaults_ | DefaultParamHandler | protected |
checkNeighbour_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
computePeakPriority_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
CoordinateType typedef | SimpleExtender< PeakType, FeatureType > | |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
dist_mz_down_ | SimpleExtender< PeakType, FeatureType > | protected |
dist_mz_up_ | SimpleExtender< PeakType, FeatureType > | protected |
dist_rt_down_ | SimpleExtender< PeakType, FeatureType > | protected |
dist_rt_up_ | SimpleExtender< PeakType, FeatureType > | protected |
error_name_ | DefaultParamHandler | protected |
extend(const ChargedIndexSet &seed_region, ChargedIndexSet &result_region) | SimpleExtender< PeakType, FeatureType > | inline |
FeaFiModule(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | FeaFiModule< PeakType, FeatureType > | inline |
FeatureMapType typedef | FeaFiModule< PeakType, FeatureType > | |
features_ | FeaFiModule< PeakType, FeatureType > | protected |
ff_ | FeaFiModule< PeakType, FeatureType > | protected |
Flag enum name | FeatureFinderDefs | |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getNextMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getNextRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | inline |
getParameters() const | DefaultParamHandler | |
getPeakIntensity(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPeakMz(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPeakRt(const FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPrevMz(FeatureFinderDefs::IndexPair &index) const | FeaFiModule< PeakType, FeatureType > | inline |
getPrevRt(FeatureFinderDefs::IndexPair &index) | FeaFiModule< PeakType, FeatureType > | inline |
getSubsections() const | DefaultParamHandler | |
IndexPair typedef | FeatureFinderDefs | |
IndexSet typedef | FeatureFinderDefs | |
intensity_threshold_ | SimpleExtender< PeakType, FeatureType > | protected |
IntensityType typedef | SimpleExtender< PeakType, FeatureType > | |
isTooFarFromCentroid_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
last_pos_extracted_ | SimpleExtender< PeakType, FeatureType > | protected |
map_ | FeaFiModule< PeakType, FeatureType > | protected |
MapType typedef | FeaFiModule< PeakType, FeatureType > | |
moveMzDown_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
moveMzUp_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
moveRtDown_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
moveRtUp_(const IndexPair &index) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
operator=(const SimpleExtender &) | SimpleExtender< PeakType, FeatureType > | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
priorities_ | SimpleExtender< PeakType, FeatureType > | protected |
priority_threshold_ | SimpleExtender< PeakType, FeatureType > | protected |
ProbabilityType typedef | SimpleExtender< PeakType, FeatureType > | |
region_ | SimpleExtender< PeakType, FeatureType > | protected |
running_avg_ | SimpleExtender< PeakType, FeatureType > | protected |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
SimpleExtender(const MSExperiment< PeakType > *map, FeatureMap< FeatureType > *features, FeatureFinder *ff) | SimpleExtender< PeakType, FeatureType > | inline |
SimpleExtender() | SimpleExtender< PeakType, FeatureType > | private |
SimpleExtender(const SimpleExtender &) | SimpleExtender< PeakType, FeatureType > | private |
SpectrumType typedef | FeaFiModule< PeakType, FeatureType > | |
subsections_ | DefaultParamHandler | protected |
UNUSED enum value | FeatureFinderDefs | |
updateMembers_() | SimpleExtender< PeakType, FeatureType > | inlineprotectedvirtual |
USED enum value | FeatureFinderDefs | |
warn_empty_defaults_ | DefaultParamHandler | protected |
writeDebugFile_(const std::vector< IndexPair > &peaks, UInt nr_feat) | SimpleExtender< PeakType, FeatureType > | inlineprotected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~FeaFiModule() | FeaFiModule< PeakType, FeatureType > | inlinevirtual |
~SimpleExtender() | SimpleExtender< PeakType, FeatureType > | inlinevirtual |