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OpenSwathDataAccessHelper Class Reference

Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces. More...

#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>

Static Public Member Functions

static void convertToOpenMSSpectrum (const OpenSwath::SpectrumPtr sptr, OpenMS::MSSpectrum<> &spectrum)
 Convert a SpectrumPtr to an OpenMS Spectrum. More...
 
static OpenSwath::SpectrumPtr convertToSpectrumPtr (const OpenMS::MSSpectrum<> &spectrum)
 Convert an OpenMS Spectrum to an SpectrumPtr. More...
 
static void convertToOpenMSChromatogram (OpenMS::MSChromatogram<> &chromatogram, const OpenSwath::ChromatogramPtr cptr)
 Convert a ChromatogramPtr to an OpenMS Chromatogram. More...
 
static void convertTargetedExp (const OpenMS::TargetedExperiment &transition_exp_, OpenSwath::LightTargetedExperiment &transition_exp)
 convert from the OpenMS Targeted experiment to the light Targeted Experiment More...
 
static void convertPeptideToAASequence (const OpenSwath::LightPeptide &peptide, AASequence &aa_sequence)
 convert from the LightPeptide to an OpenMS AASequence (with correct modifications) More...
 

Detailed Description

Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces.

Member Function Documentation

static void convertPeptideToAASequence ( const OpenSwath::LightPeptide peptide,
AASequence aa_sequence 
)
static

convert from the LightPeptide to an OpenMS AASequence (with correct modifications)

Referenced by MRMFeatureFinderScoring::calculateSwathScores_().

static void convertTargetedExp ( const OpenMS::TargetedExperiment transition_exp_,
OpenSwath::LightTargetedExperiment transition_exp 
)
static

convert from the OpenMS Targeted experiment to the light Targeted Experiment

Referenced by MRMFeatureFinderScoring::pickExperiment().

static void convertToOpenMSChromatogram ( OpenMS::MSChromatogram<> &  chromatogram,
const OpenSwath::ChromatogramPtr  cptr 
)
static

Convert a ChromatogramPtr to an OpenMS Chromatogram.

static void convertToOpenMSSpectrum ( const OpenSwath::SpectrumPtr  sptr,
OpenMS::MSSpectrum<> &  spectrum 
)
static

Convert a SpectrumPtr to an OpenMS Spectrum.

static OpenSwath::SpectrumPtr convertToSpectrumPtr ( const OpenMS::MSSpectrum<> &  spectrum)
static

Convert an OpenMS Spectrum to an SpectrumPtr.


OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5