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IDFilter Member List

This is the complete list of members for IDFilter, including all inherited members.

filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false)IDFilter
filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification)IDFilterinline
filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n)IDFilterinline
filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification)IDFilterinline
filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification)IDFilter
filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, PeptideIdentification &filtered_identification)IDFilter
filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX)IDFilter
filterIdentificationsByMzError(const PeptideIdentification &identification, DoubleReal mass_error, bool unit_ppm, PeptideIdentification &filtered_identification)IDFilter
filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false)IDFilter
filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification)IDFilter
filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins)IDFilterinline
filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05)IDFilter
filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, DoubleReal p_value=0.05)IDFilter
filterIdentificationsByScore(const IdentificationType &identification, DoubleReal threshold_score, IdentificationType &filtered_identification)IDFilterinline
filterIdentificationsByScores(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_score, DoubleReal protein_threshold_score)IDFilterinline
filterIdentificationsByThreshold(const IdentificationType &identification, DoubleReal threshold_fraction, IdentificationType &filtered_identification)IDFilterinline
filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, DoubleReal peptide_threshold_fraction, DoubleReal protein_threshold_fraction)IDFilterinline
filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification)IDFilter
filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification)IDFilter
IDFilter()IDFilter
removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > peptide_identifications, ProteinIdentification &filtered_identification)IDFilter
~IDFilter()IDFiltervirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5