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Factory() :
Factory< FactoryProduct >
FailedAPICall() :
FailedAPICall
FalseDiscoveryRate() :
FalseDiscoveryRate
FASTAEntry() :
FASTAFile::FASTAEntry
FASTAFile() :
FASTAFile
FastaIterator() :
FastaIterator
FastaIteratorIntern() :
FastaIteratorIntern
fatalError() :
XMLHandler
,
XMLValidator
FeaFiModule() :
FeaFiModule< PeakType, FeatureType >
Feature() :
Feature
FeatureDeconvolution() :
FeatureDeconvolution
FeatureDistance() :
FeatureDistance
FeatureEditDialog() :
FeatureEditDialog
FeatureFileOptions() :
FeatureFileOptions
FeatureFinder() :
FeatureFinder
FeatureFinderAlgorithm() :
FeatureFinderAlgorithm< PeakType, FeatureType >
FeatureFinderAlgorithmIsotopeWavelet() :
FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
FeatureFinderAlgorithmMRM() :
FeatureFinderAlgorithmMRM< PeakType, FeatureType >
FeatureFinderAlgorithmPicked() :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
FeatureFinderAlgorithmSH() :
FeatureFinderAlgorithmSH< PeakType, FeatureType >
FeatureFinderAlgorithmSHCtrl() :
FeatureFinderAlgorithmSHCtrl
FeatureFinderAlgorithmSimple() :
FeatureFinderAlgorithmSimple< PeakType, FeatureType >
FeatureFinderAlgorithmSimplest() :
FeatureFinderAlgorithmSimplest< PeakType, FeatureType >
FeatureFindingMetabo() :
FeatureFindingMetabo
FeatureGroupingAlgorithm() :
FeatureGroupingAlgorithm
FeatureGroupingAlgorithmIdentification() :
FeatureGroupingAlgorithmIdentification
FeatureGroupingAlgorithmLabeled() :
FeatureGroupingAlgorithmLabeled
FeatureGroupingAlgorithmQT() :
FeatureGroupingAlgorithmQT
FeatureGroupingAlgorithmUnlabeled() :
FeatureGroupingAlgorithmUnlabeled
FeatureHandle() :
FeatureHandle
FeatureHandleMutable_() :
FeatureHandle::FeatureHandleMutable_
FeatureHypothesis() :
FeatureHypothesis
FeatureLCProfile() :
FeatureLCProfile
FeatureMap() :
FeatureMap< FeatureT >
FeatureOpenMS() :
FeatureOpenMS
FeatureXMLFile() :
FeatureXMLFile
FidHandler() :
FidHandler
field_changed_() :
DataFilterDialog
file_() :
GlobalExceptionHandler
fileChanged() :
FileWatcher
fileChanged_() :
TOPPViewBase
FileDescription() :
ConsensusMap::FileDescription
FileEmpty() :
FileEmpty
fileList() :
File
fileNamesValid() :
TOPPASInputFileListVertex
fileNameValid() :
TOPPASInputFileDialog
FileNotFound() :
FileNotFound
FileNotReadable() :
FileNotReadable
FileNotWritable() :
FileNotWritable
fileOpen() :
QApplicationTOPP
FileWatcher() :
FileWatcher
fillChromatogramData_() :
MzMLHandler< MapType >
fillComboBox_() :
BaseVisualizerGUI
fillComboBoxes_() :
TOPPASIOMappingDialog
fillData_() :
MzDataHandler< MapType >
,
MzMLHandler< MapType >
fillDensities() :
PosteriorErrorProbabilityModel
fillExtendedResidueTable_() :
IntegerMassDecomposer< ValueType, DecompositionValueType >
fillFromInputLine() :
FuzzyStringComparator::StreamElement_
fillInputVector_() :
IsobaricIsotopeCorrector
fillIntensities() :
BaseModel< D >
fillIntensity() :
BaseModel< D >
fillLeft() :
String
fillRight() :
String
filter() :
MorphologicalFilter
,
GaussFilter
,
GaussFilterAlgorithm
,
SavitzkyGolayFilter
filterByPeakWidth() :
ElutionPeakDetection
filterContextMenu() :
TOPPViewBase
filterData() :
SILACAnalyzer
filterDataPoints() :
SILACFiltering
filterDecomps_() :
CompNovoIdentificationBase
filterDeisotopicMSPeak() :
ProcessData
filterDetectability() :
DetectabilitySimulation
filterEdit() :
TOPPViewBase
filterExperiment() :
MorphologicalFilter
,
GaussFilter
,
SavitzkyGolayFilter
FilterFunctor() :
FilterFunctor
filterHits_() :
MetaDataBrowser
filterIdentificationsByBestHits() :
IDFilter
filterIdentificationsByBestNHits() :
IDFilter
filterIdentificationsByBestNToMHits() :
IDFilter
filterIdentificationsByCharge() :
IDFilter
filterIdentificationsByExclusionPeptides() :
IDFilter
filterIdentificationsByLength() :
IDFilter
filterIdentificationsByMzError() :
IDFilter
filterIdentificationsByProteins() :
IDFilter
filterIdentificationsByRTFirstDimPValues() :
IDFilter
filterIdentificationsByRTPValues() :
IDFilter
filterIdentificationsByScore() :
IDFilter
filterIdentificationsByScores() :
IDFilter
filterIdentificationsByThreshold() :
IDFilter
filterIdentificationsByThresholds() :
IDFilter
filterIdentificationsByVariableModifications() :
IDFilter
filterIdentificationsUnique() :
IDFilter
filterPeakMap() :
BernNorm
,
MarkerMower
,
NLargest
,
Normalizer
,
ParentPeakMower
,
Scaler
,
SqrtMower
,
ThresholdMower
,
WindowMower
filterPeakSpectrum() :
BernNorm
,
MarkerMower
,
NLargest
,
Normalizer
,
ParentPeakMower
,
Scaler
,
SqrtMower
,
ThresholdMower
,
WindowMower
filterPeakSpectrumForTopNInJumpingWindow() :
WindowMower
filterPeakSpectrumForTopNInSlidingWindow() :
WindowMower
filterPeptideIds_() :
PrecursorIonSelection
filterPermuts_() :
CompNovoIdentificationBase
filterProtIds_() :
PrecursorIonSelection
filterRange() :
MorphologicalFilter
filterSeeds_() :
SILACFiltering
filterSpectrum() :
ParentPeakMower
,
BernNorm
,
MarkerMower
,
NLargest
,
Normalizer
,
Scaler
,
SqrtMower
,
ThresholdMower
filterTaxonomyIdentifier_() :
PrecursorIonSelectionPreprocessing
find() :
File
find_AC() :
MS2Info
find_all_tryptic() :
MRMDecoy
find_closest_mz_match() :
ProcessData
find_feature_by_ID() :
LCMS
find_LC_MS_by_ID() :
LCMS
find_match_by_id() :
SHFeature
find_Modification() :
MS2Info
find_retention_time() :
ProcessData
find_true_peak() :
LCElutionPeak
findBestIsotopeFit_() :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
findDatabase() :
File
findDoc() :
File
findEntry() :
Param::ParamNode
findEntry_() :
TOPPBase
findEntryRecursive() :
Param::ParamNode
findExecutable() :
File
findFeaturesToMerge() :
MS1FeatureMerger
findFirst() :
Param
findFirst_() :
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
,
SuffixArraySeqan
findHit() :
ProteinIdentification
findIsotope_() :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
findLargestPeak() :
MRMTransitionGroupPicker
findLocalExtrema() :
ElutionPeakDetection
findLocalFeatures_() :
FeatureFindingMetabo
findMatchingPeaks_() :
TwoDOptimization
findMaxByIntPeak() :
MassTrace
findMinimalProteinList() :
PSProteinInference
findModificationIndex() :
ModificationsDB
findMS2Fragment() :
MS2ConsensusSpectrum
findMzKey() :
BackgroundControl
findNearest() :
MSChromatogram< PeakT >
,
MSSpectrum< PeakT >
findNearestPeak_() :
Spectrum2DCanvas
findNext() :
Param
findNode() :
Param::ParamNode
findParentOf() :
Param::ParamNode
findPeakAtPosition_() :
Spectrum1DCanvas
findPeptide() :
TransitionHelper
findPeptideEntry_() :
ProteinResolver
findReferenceChannel_() :
IsobaricNormalizer
findRelevantFilePaths_() :
QuantitativeExperimentalDesign
findSpec() :
SuffixArray
,
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
findStream_() :
LogStream
findTrKey() :
BackgroundControl
findWinner_() :
PeakIntensityPredictor
finishAdding_() :
BaseVisualizerGUI
,
Spectrum2DCanvas
,
Spectrum3DCanvas
,
SpectrumCanvas
,
Spectrum1DCanvas
finishContextMenu_() :
Spectrum2DCanvas
finishHoveringEdge() :
TOPPASScene
,
TOPPASVertex
finishTOPPToolExecution() :
TOPPViewBase
firstExec() :
TOPPASIOMappingDialog
firstToUpper() :
String
fit() :
PosteriorErrorProbabilityModel
,
EGHTraceFitter< PeakType >
,
PosteriorErrorProbabilityModel
,
GaussFitter
,
TraceFitter< PeakType >
,
GammaDistributionFitter
,
GumbelDistributionFitter
,
GaussTraceFitter< PeakType >
,
ModelFitter< PeakType, FeatureType >
fit1d() :
Fitter1D
,
IsotopeFitter1D
,
EmgFitter1D
,
EGHFitter1D
,
LmaGaussFitter1D
,
ExtendedIsotopeFitter1D
,
BiGaussFitter1D
,
GaussFitter1D
,
LmaIsotopeFitter1D
fitModel() :
MapAlignmentAlgorithm
,
TransformationDescription
fitMZ_() :
ModelFitter< PeakType, FeatureType >
fitMZLoop_() :
ModelFitter< PeakType, FeatureType >
fitOffset_() :
MaxLikeliFitter1D
fitPeakShape_() :
PeakPickerCWT
fitRT_() :
ModelFitter< PeakType, FeatureType >
,
EmgScoring
,
FeatureFinderAlgorithmMRM< PeakType, FeatureType >
Fitter1D() :
Fitter1D
fixRange() :
Spectrum2DGoToDialog
,
Spectrum1DGoToDialog
flipLayer() :
Spectrum1DCanvas
flippedLayersExist() :
Spectrum1DCanvas
fload() :
CsvFile
flush() :
LogStream
,
IChromatogramsWriter
,
ISpectraWriter
focusByTab() :
TOPPASBase
focusInEvent() :
OpenMSLineEdit
focusOutEvent() :
OpenMSLineEdit
,
Spectrum3DOpenGLCanvas
,
SpectrumCanvas
followRedirect() :
MascotRemoteQuery
forwardDump() :
HiddenMarkovModel
forwardTOPPOutput() :
TOPPASToolVertex
FoundProteinFunctor() :
FoundProteinFunctor
fourierActivation_() :
MapAlignmentAlgorithmSpectrumAlignment
freeGSLMemory_() :
IsobaricIsotopeCorrector
fromCellString() :
MzTabBoolean
,
MzTabInteger
,
MzTabString
,
MzTabDouble
,
MzTabNullAbleInterface
,
MzTabParameterList
,
MzTabParameter
,
MzTabModification
,
MzTabSpectraRef
,
MzTabDoubleList
,
MzTabModificationList
,
MzTabStringList
fromLocalFile() :
TOPPASResource
fromString() :
MultiGradient
,
DataFilters::DataFilter
front() :
ConstRefVector< ContainerT >
FTPeakDetectController() :
FTPeakDetectController
fullDimensionName() :
Peak2D
fullDimensionNameMZ() :
Peak2D
fullDimensionNameRT() :
Peak2D
fullDimensionUnit() :
Peak2D
fullDimensionUnitMZ() :
Peak2D
fullDimensionUnitRT() :
Peak2D
function_() :
GlobalExceptionHandler
FuzzyStringComparator() :
FuzzyStringComparator
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5