Imports an mzML file to an OpenMS database.
[Tool is no longer supported and will be removed in OpenMS 2.0]
Besides the file to import, only the connection data has to be given. The data can then be retrieved by the DBExporter.
The init flag can be used to create a new OpenMS database.
The command line parameters of this tool are:
DBImporter -- Imports data to an OpenMS database. Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976 Usage: DBImporter <options> Options (mandatory options marked with '*'): -user <user>* User/login of the DB -host <host> Host name of the DB server (default: 'localhost') -password <password>* Password for the user -port <port> Port the DB server is running on (default: '3306') -db <name>* DB name -in <file> Input file (valid formats: 'mzML') -init Deletes all tables and sets up a new OpenMS database. The data of 'in' is not imported! Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |