IDRipper splits the protein/peptide identification of an idXML file into several idXML files according their annotated file origin.
potential predecessor tools | ![]() ![]() | potential successor tools |
IDFilter | IDMapper |
Example
Assuming each peptide identification in a given idXML-file is annotated with its file origin (e.g. IDRipper_test.idXML) :
or <userParam type="string" name="file_origin" value="IDMerger1_test.idXML">
<userParam type="string" name="file_origin" value="IDMerger2_test.idXML">
Obviously the file contains protein/peptide identifications of IDMerger1_test.idXML and IDMerger2_test.idXML.
Calling IDRipper with an input file (here: -in
IDRipper_test.idXML) and an output directory (via out
or out_path
) will result in two idXML-files stored in the specified directory and named according their file origin.
In theory, merging files with IDMerger
and rip the resulting file with IDSplitter
will result in the original input files.
NOTE: The meta value file origin is removed by the IDSplitter
!!
The command line parameters of this tool are:
IDRipper -- Split protein/peptide identification file into several files according annotated file origin. Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976 Usage: IDRipper <options> Options (mandatory options marked with '*'): -in <file>* IdXML-file, whereas the protein/peptide identifications must be tagged with file_origin (valid formats: 'idXML') -out <file> The path to the file is used as the output directory. (valid formats: 'idXML') -out_path <file> Directory for the idXML-files after ripping according file_origin tag. If out_path is set, out is ignored. Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |