35 #ifndef OPENMS_ANALYSIS_ID_ASCORE_H
36 #define OPENMS_ANALYSIS_ID_ASCORE_H
89 void computeHighestPeptides(std::vector<std::vector<DoubleReal> > & peptide_site_scores, std::vector<ProbablePhosphoSites> & sites, std::vector<std::vector<Size> > & permutations);
91 void compute_site_determining_ions(std::vector<RichPeakSpectrum> & th_spectra,
ProbablePhosphoSites & candidates,
Int charge, std::vector<RichPeakSpectrum> & site_determining_ions);
96 DoubleReal peptideScore_(std::vector<DoubleReal> & scores);
99 std::vector<Size> computeTupel_(
AASequence & without_phospho);
101 std::vector<std::vector<Size> > computePermutations_(std::vector<Size> tupel,
Int number_of_phospho_sites);
106 #endif // OPENMS_ANALYSIS_ID_ASCORE_H
Implementation of the Ascore For a given peptide sequence and its MS^2 spectrum it is tried to identi...
Definition: AScore.h:62
Size first
Definition: AScore.h:48
Size second
Definition: AScore.h:49
Representation of a peptide/protein sequence.
Definition: AASequence.h:84
Size peak_depth
Definition: AScore.h:52
Representation of a peptide hit.
Definition: PeptideHit.h:54
Size seq_1
Definition: AScore.h:50
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:144
Size seq_2
Definition: AScore.h:51
int Int
Signed integer type.
Definition: Types.h:100
Size AScore
Definition: AScore.h:53