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MRMFeatureFinderScoring Member List

This is the complete list of members for MRMFeatureFinderScoring, including all inherited members.

add_up_spectra_MRMFeatureFinderScoringprivate
begin_ProgressLoggermutableprotected
calculateSwathScores_(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, MRMFeature &mrmfeature_, OpenSwath::SpectrumAccessPtr swath_map, std::vector< double > &normalized_library_intensity, OpenSwath_Scores scores)MRMFeatureFinderScoringinlineprivate
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
diascoring_MRMFeatureFinderScoringprivate
dlg_ProgressLoggermutableprotected
emgscoring_MRMFeatureFinderScoringprivate
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
getAddedSpectra_(OpenSwath::SpectrumAccessPtr swath_map, double RT, int nr_spectra_to_add)MRMFeatureFinderScoringinlineprivate
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
mapExperimentToTransitionList(OpenSwath::SpectrumAccessPtr input, OpenSwath::LightTargetedExperiment &transition_exp, TransitionGroupMapType &transition_group_map, TransformationDescription trafo, double rt_extraction_window)MRMFeatureFinderScoring
ModificationType typedefMRMFeatureFinderScoring
MRMFeatureFinderScoring()MRMFeatureFinderScoring
mrmscore_MRMFeatureFinderScoringprivate
MRMTransitionGroupType typedefMRMFeatureFinderScoring
NONE enum valueProgressLogger
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PeptideRefMap_MRMFeatureFinderScoringprivate
PeptideRTMap_MRMFeatureFinderScoringprivate
PeptideType typedefMRMFeatureFinderScoring
pickExperiment(MSExperiment< Peak1D > &chromatograms, FeatureMap< Feature > &output, TargetedExperiment &transition_exp_, TransformationDescription trafo, MSExperiment< Peak1D > &swath_map)MRMFeatureFinderScoringinline
pickExperiment(OpenSwath::SpectrumAccessPtr input, FeatureMap< Feature > &output, OpenSwath::LightTargetedExperiment &transition_exp, TransformationDescription trafo, OpenSwath::SpectrumAccessPtr swath_map, TransitionGroupMapType &transition_group_map)MRMFeatureFinderScoringinline
ProgressLogger()ProgressLogger
ProteinRefMap_MRMFeatureFinderScoringprivate
ProteinType typedefMRMFeatureFinderScoring
quantification_cutoff_MRMFeatureFinderScoringprivate
recursion_depth_ProgressLoggerprotectedstatic
RichPeakChromatogram typedefMRMFeatureFinderScoring
rt_extraction_window_MRMFeatureFinderScoringprivate
rt_normalization_factor_MRMFeatureFinderScoringprivate
scorePeakgroups_(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, TransformationDescription &trafo, OpenSwath::SpectrumAccessPtr swath_map, FeatureMap< Feature > &output)MRMFeatureFinderScoringinlineprivate
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
setStrictFlag(bool f)MRMFeatureFinderScoringinline
spacing_for_spectra_resampling_MRMFeatureFinderScoringprivate
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_report_after_feature_MRMFeatureFinderScoringprivate
stop_watch_ProgressLoggermutableprotected
strict_MRMFeatureFinderScoringprivate
subsections_DefaultParamHandlerprotected
TargetedExpType typedefMRMFeatureFinderScoring
TransitionGroupMapType typedefMRMFeatureFinderScoring
TransitionType typedefMRMFeatureFinderScoring
type_ProgressLoggermutableprotected
updateMembers_()MRMFeatureFinderScoringprivatevirtual
use_coelution_score_MRMFeatureFinderScoringprivate
use_elution_model_score_MRMFeatureFinderScoringprivate
use_intensity_score_MRMFeatureFinderScoringprivate
use_library_score_MRMFeatureFinderScoringprivate
use_nr_peaks_score_MRMFeatureFinderScoringprivate
use_rt_score_MRMFeatureFinderScoringprivate
use_shape_score_MRMFeatureFinderScoringprivate
use_sn_score_MRMFeatureFinderScoringprivate
use_total_xic_score_MRMFeatureFinderScoringprivate
value_ProgressLoggermutableprotected
warn_empty_defaults_DefaultParamHandlerprotected
write_convex_hull_MRMFeatureFinderScoringprivate
~DefaultParamHandler()DefaultParamHandlervirtual
~MRMFeatureFinderScoring()MRMFeatureFinderScoring
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5