background_subtraction_ | MRMTransitionGroupPicker | protected |
calculateBgEstimation_(const RichPeakChromatogram &smoothed_chromat, double best_left, double best_right) | MRMTransitionGroupPicker | protected |
check_defaults_ | DefaultParamHandler | protected |
createMRMFeature(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, std::vector< SpectrumT > &picked_chroms, int &chr_idx, int &peak_idx) | MRMTransitionGroupPicker | inline |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
findLargestPeak(std::vector< RichPeakChromatogram > &picked_chroms, int &chr_idx, int &peak_idx) | MRMTransitionGroupPicker | |
gauss_width_ | MRMTransitionGroupPicker | protected |
getDefaults() const | DefaultParamHandler | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
MRMTransitionGroupPicker() | MRMTransitionGroupPicker | |
operator=(const MRMTransitionGroupPicker &rhs) | MRMTransitionGroupPicker | protected |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
peak_width_ | MRMTransitionGroupPicker | protected |
pickChromatogram(const RichPeakChromatogram &chromatogram, RichPeakChromatogram &smoothed_chrom, RichPeakChromatogram &picked_chrom) | MRMTransitionGroupPicker | |
picked_chroms_ | MRMTransitionGroupPicker | protected |
pickTransitionGroup(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group) | MRMTransitionGroupPicker | inline |
prepareMasterContainer_(MRMTransitionGroup< SpectrumT, TransitionT > &transition_group, SpectrumT &master_peak_container, int chr_idx, double best_left, double best_right) | MRMTransitionGroupPicker | inlineprotected |
remove_overlapping_features(std::vector< SpectrumT > &picked_chroms, double best_left, double best_right) | MRMTransitionGroupPicker | inline |
resampleChromatogram_(const SpectrumT &chromatogram, SpectrumT &master_peak_container, double best_left, double best_right) | MRMTransitionGroupPicker | inlineprotected |
RichPeakChromatogram typedef | MRMTransitionGroupPicker | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
sgolay_frame_length_ | MRMTransitionGroupPicker | protected |
sgolay_polynomial_order_ | MRMTransitionGroupPicker | protected |
signal_to_noise_ | MRMTransitionGroupPicker | protected |
smoothed_chroms_ | MRMTransitionGroupPicker | protected |
sn_bin_count_ | MRMTransitionGroupPicker | protected |
sn_win_len_ | MRMTransitionGroupPicker | protected |
stop_after_feature_ | MRMTransitionGroupPicker | protected |
stop_after_intensity_ratio_ | MRMTransitionGroupPicker | protected |
subsections_ | DefaultParamHandler | protected |
updateMembers_() | MRMTransitionGroupPicker | protectedvirtual |
use_gauss_ | MRMTransitionGroupPicker | protected |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~MRMTransitionGroupPicker() | MRMTransitionGroupPicker | |