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DBImporter

Imports an mzML file to an OpenMS database.

Deprecated:
Deprecated in OpenMS 1.9

[Tool is no longer supported and will be removed in OpenMS 2.0]

Besides the file to import, only the connection data has to be given. The data can then be retrieved by the DBExporter.

The init flag can be used to create a new OpenMS database.

The command line parameters of this tool are:

DBImporter -- Imports data to an OpenMS database.
Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976

Usage:
  DBImporter <options>

Options (mandatory options marked with '*'):
  -user <user>*          User/login of the DB
  -host <host>           Host name of the DB server (default: 'localhost')
  -password <password>*  Password for the user
  -port <port>           Port the DB server is running on (default: '3306')
  -db <name>*            DB name
  -in <file>             Input file  (valid formats: 'mzML')
  -init                  Deletes all tables and sets up a new OpenMS database.
                         The data of 'in' is not imported!
                         
Common TOPP options:
  -ini <file>            Use the given TOPP INI file
  -threads <n>           Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>      Writes the default configuration file
  --help                 Shows options
  --helphelp             Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+DBImporterImports data to an OpenMS database.
version1.11.1 Version of the tool that generated this parameters file.
++1Instance '1' section for 'DBImporter'
user user/login of the DB
hostlocalhost host name of the DB server
password password for the user
port3306 port the DB server is running on
db DB name
in input file input file*.mzML
initfalse Deletes all tables and sets up a new OpenMS database.
The data of 'in' is not imported!
true,false
log Name of log file (created only when specified)
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
testfalse Enables the test mode (needed for internal use only)true,false

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5