Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces. More...
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>
Static Public Member Functions | |
static void | convertToOpenMSSpectrum (const OpenSwath::SpectrumPtr sptr, OpenMS::MSSpectrum<> &spectrum) |
Convert a SpectrumPtr to an OpenMS Spectrum. More... | |
static OpenSwath::SpectrumPtr | convertToSpectrumPtr (const OpenMS::MSSpectrum<> &spectrum) |
Convert an OpenMS Spectrum to an SpectrumPtr. More... | |
static void | convertToOpenMSChromatogram (OpenMS::MSChromatogram<> &chromatogram, const OpenSwath::ChromatogramPtr cptr) |
Convert a ChromatogramPtr to an OpenMS Chromatogram. More... | |
static void | convertTargetedExp (const OpenMS::TargetedExperiment &transition_exp_, OpenSwath::LightTargetedExperiment &transition_exp) |
convert from the OpenMS Targeted experiment to the light Targeted Experiment More... | |
static void | convertPeptideToAASequence (const OpenSwath::LightPeptide &peptide, AASequence &aa_sequence) |
convert from the LightPeptide to an OpenMS AASequence (with correct modifications) More... | |
Several helpers to convert OpenMS datastructures to structures that implement the OpenSWATH interfaces.
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convert from the LightPeptide to an OpenMS AASequence (with correct modifications)
Referenced by MRMFeatureFinderScoring::calculateSwathScores_().
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convert from the OpenMS Targeted experiment to the light Targeted Experiment
Referenced by MRMFeatureFinderScoring::pickExperiment().
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Convert a ChromatogramPtr to an OpenMS Chromatogram.
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Convert a SpectrumPtr to an OpenMS Spectrum.
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Convert an OpenMS Spectrum to an SpectrumPtr.
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5 |