Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
IsotopeWaveletCudaKernel.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2013.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Rene Hussong$
32 // --------------------------------------------------------------------------
33 
34 //**************************
35 //Uses the sorting code provided by Alan Kaatz
36 //**************************
37 
38 
39 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETCUDAKERNEL_H
40 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETCUDAKERNEL_H
41 
42 #include <string>
43 #include <cuda.h>
44 #include <cuda_runtime.h>
45 
46 using namespace std;
47 
48 namespace OpenMS
49 {
50  int checkCUDAError(const char * msg);
51 
52  void getExternalCudaTransforms(dim3 dimGrid, dim3 dimBlock, float * positions_dev, float * intensities_dev, int from_max_to_left, int from_max_to_right, float * result_dev,
53  const int charge, const int to_load, const int to_compute, const int size, float * fwd2, bool highres = false);
54 
55  int sortOnDevice(float * array, int * pos_indices, int numElements, int padding);
56 
57  void scoreOnDevice(int * sorted_positions_indices, float * trans_intensities, float * pos, float * scores,
58  const int c, const int num_of_scores, const int overall_size, const unsigned int max_peak_cutoff, const float ampl_cutoff);
59 
60  void deriveOnDevice(float * spec, float * spec_pos, float * fwd, const int size, float * intensities_dev, bool highres = false);
61 }
62 
63 #endif
void deriveOnDevice(float *spec, float *spec_pos, float *fwd, const int size, float *intensities_dev, bool highres=false)
const double c
int sortOnDevice(float *array, int *pos_indices, int numElements, int padding)
int checkCUDAError(const char *msg)
void scoreOnDevice(int *sorted_positions_indices, float *trans_intensities, float *pos, float *scores, const int c, const int num_of_scores, const int overall_size, const unsigned int max_peak_cutoff, const float ampl_cutoff)
void getExternalCudaTransforms(dim3 dimGrid, dim3 dimBlock, float *positions_dev, float *intensities_dev, int from_max_to_left, int from_max_to_right, float *result_dev, const int charge, const int to_load, const int to_compute, const int size, float *fwd2, bool highres=false)

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:15 using doxygen 1.8.5