Will extract several qp from several run/sets in a tabular format.
pot. predecessor tools | ![]() ![]() | pot. successor tools |
QCExporter | QCMerger | |
XTandemAdapter | QCShrinker |
The data contained as values of the qp of a qcml file at in
can be exported in tabluar (csv) format.
names
The name of the target runs or sets to be exported from. If empty, from all will be exported.mapping
The mapping of the exported table's headers to the according qp cvs. The first row is considered containing the headers as for the exported the table. The second row is considered the according qp cv accessions of the qp to be exported.Output is in csv format (see parameter out_csv
) which can be easily viewed/parsed by many programs.
The command line parameters of this tool are:
QCExporter -- Will extract several qp from several run/sets in a tabular format. Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976 Usage: QCExporter <options> Options (mandatory options marked with '*'): -in <file>* Input qcml file (valid formats: 'qcML') -names <names> The name of the target runs or sets to be exported from. If empty, from all will be expo rted. -mapping <file>* The mapping of the exported table's headers to the according qp cvs. The first row is considered containing the headers as for the exported the table. The second row is consi dered the according qp cv accessions of the qp to be exported. (valid formats: 'csv') -out_csv <file>* Output csv formatted quality parameter. (valid formats: 'csv') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |