Here is a list of all class members with links to the classes they belong to:
- m -
- m_
: mean_and_stddev
, EdwardsLippertIterator
- m_2H
: RNPxlReportRow
- m_3H
: RNPxlReportRow
- m_4H
: RNPxlReportRow
- m_features
: MockMRMFeature
- m_H
: RNPxlReportRow
- m_intensity
: MockFeature
, MockMRMFeature
- m_intensity_vec
: MockFeature
- m_library_intensities
: MockTransitionGroup
- m_native_ids
: MockTransitionGroup
- m_rt
: MockFeature
, MockMRMFeature
- m_rt_vec
: MockFeature
- m_size
: MockTransitionGroup
- m_sn_value
: MockSignalToNoise
- MAGNETIC_DEFLECTION
: Instrument
- magnetic_field_strength_
: MassAnalyzer
- magnetic_fs_
: MassAnalyzerVisualizer
- main()
: TOPPBase
- main_()
: TOPPBase
, TOPPRNPxl
- main_data_structure
: ProcessData
- main_iterator
: ProcessData
- mainlayout_
: BaseVisualizerGUI
- mainWindowNeedsUpdate()
: TOPPASScene
- major_version_
: MascotXMLHandler
- makeAxes()
: Spectrum3DOpenGLCanvas
- makeAxesTicks()
: Spectrum3DOpenGLCanvas
- makeConsensusFeature_()
: QTClusterFinder
- makeDataAsStick()
: Spectrum3DOpenGLCanvas
- makeDataAsTopView()
: Spectrum3DOpenGLCanvas
- makeGridLines()
: Spectrum3DOpenGLCanvas
- makeGround()
: Spectrum3DOpenGLCanvas
- makeLinearRegression_()
: InternalCalibration
- makePrecursorSelectionForKnownLCMSMap()
: OfflinePrecursorIonSelection
- makeScanMap_()
: PepXMLFile
- makeStream()
: CompressedInputSource
- MALDI
: IonSource
, IonizationSimulation
- maldi_probabilities_
: IonizationSimulation
- manhattanDist_()
: ConfidenceScoring
- MANUAL
: SignalToNoiseEstimatorMeanIterative< Container >
, SignalToNoiseEstimatorMedian< Container >
- Map
: Factory< FactoryProduct >
, SingletonRegistry
, FTPeakDetectController
- map2csv()
: QcMLFile
- map_
: INIUpdater
, FeatureXMLFile
, FeaFiModule< PeakType, FeatureType >
, FeatureFinderAlgorithm< PeakType, FeatureType >
, FeatureFinderAlgorithmPicked< PeakType, FeatureType >
, FeatureFinderAlgorithmSH< PeakType, FeatureType >
, TOPPASResources
, PeakIntensityPredictor
- map_as_2d_disabled_
: TOPPViewOpenDialog
- map_const_iterator
: SparseVector< Value >
- map_index_
: GridFeature
, FeatureHandle
- map_iterator
: SparseVector< Value >
- map_label_
: FeatureDeconvolution
- map_label_inverse_
: FeatureDeconvolution
- map_points_
: ConvexHull2D
- map_precursor_to_chrom_idx_cache_
: SpectraViewWidget
- map_to_vec_index_
: IsobaricNormalizer
- map_unitid_to_meta_data_
: MzTab
- map_unitid_to_peptide_data_
: MzTab
- map_unitid_to_protein_data_
: MzTab
- map_unitid_to_small_molecule_data_
: MzTab
- MapAccPepType
: MzTabFile
- MapAlignmentAlgorithm()
: MapAlignmentAlgorithm
- MapAlignmentAlgorithmIdentification()
: MapAlignmentAlgorithmIdentification
- MapAlignmentAlgorithmPoseClustering()
: MapAlignmentAlgorithmPoseClustering
- MapAlignmentAlgorithmSpectrumAlignment()
: MapAlignmentAlgorithmSpectrumAlignment
- MapAlignmentEvaluationAlgorithm()
: MapAlignmentEvaluationAlgorithm
- MapAlignmentEvaluationAlgorithmPrecision()
: MapAlignmentEvaluationAlgorithmPrecision
- MapAlignmentEvaluationAlgorithmRecall()
: MapAlignmentEvaluationAlgorithmRecall
- mapExperimentToTransitionList()
: MRMFeatureFinderScoring
- mapFiles2Design_()
: QuantitativeExperimentalDesign
- mapIdentifications_()
: ConsensusID
- MapIterator
: Factory< FactoryProduct >
, SingletonRegistry
- mapped_type
: HashGrid< Cluster >
- mapping
: MappingParam
- mapping_
: MzMLHandler< MapType >
, SemanticValidator
- mapping_rules_
: CVMappings
- mapSearchEngineScoreToCvParam_()
: MzTabFile
- mapSearchEngineToCvParam_()
: MzTabFile
- mapSeeds2Features()
: IsotopeWaveletTransform< PeakType >
- MapType
: CachedmzML
, FeaFiModule< PeakType, FeatureType >
, FeatureFinderAlgorithm< PeakType, FeatureType >
, FeatureFinderAlgorithmMRM< PeakType, FeatureType >
, FeatureFinderAlgorithmPicked< PeakType, FeatureType >
, FeatureFinderAlgorithmSH< PeakType, FeatureType >
, SimpleSeeder< PeakType, FeatureType >
, FoundProteinFunctor
- margin()
: AxisWidget
- margin_
: AxisWidget
, HistogramWidget
, MultiGradientSelector
- marker_ions
: RNPxlReportRow
- MarkerMower()
: MarkerMower
- markers_
: MarkerMower
- markUnreachable()
: TOPPASMergerVertex
, TOPPASVertex
- marr_()
: ContinuousWaveletTransformNumIntegration
- mascot_xml_
: MascotRemoteQuery
- MascotGenericFile()
: MascotGenericFile
- MascotInfile()
: MascotInfile
- MascotRemoteQuery()
: MascotRemoteQuery
- MASCOTXML
: FileTypes
- MascotXMLFile()
: MascotXMLFile
- MascotXMLHandler()
: MascotXMLHandler
- mass
: PepXMLFile::AminoAcidModification
, MS1Signal
, IMSIsotopeDistribution::Peak
- mass_
: Compomer
, Modification
, Sample
, CentroidPeak
- mass_analyzers_
: Instrument
- MASS_CHROMATOGRAM
: ChromatogramSettings
- mass_container
: IMSAlphabet
- mass_decomp_algorithm_
: CompNovoIdentificationBase
- mass_diff_
: ChargePair
- mass_error_ppm_
: MassTraceDetection
- mass_error_unit_
: AccurateMassSearchEngine
- mass_error_value_
: AccurateMassSearchEngine
- mass_formula_mapping_
: AccurateMassSearchEngine
- mass_id_mapping_
: AccurateMassSearchEngine
- mass_in_lcms_
: IntegerMassDecomposer< ValueType, DecompositionValueType >
- mass_iterator
: IMSAlphabet
- mass_mapping_
: ModifierRep
- mass_separations
: SILACFiltering::BlacklistEntry
- mass_separations_
: SILACFilter
- mass_shift_
: Tagging
- mass_shifts
: SILACPoint
- mass_to_charge
: MzTabPeptideSectionRow
, MzTabSmallMoleculeSectionRow
- mass_type
: IMSAlphabet
, IMSElement
, IMSIsotopeDistribution
, ProteinIdentification::SearchParameters
- mass_type_
: MascotInfile
, ProteinIdentificationVisualizer
- mass_type_fragment_
: SequestInfile
- mass_type_parent_
: SequestInfile
- mass_window_width_
: IsotopeDistributionCache
, FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- MassAnalyzer()
: MassAnalyzer
- MassAnalyzerVisualizer()
: MassAnalyzerVisualizer
- MassDecomposition()
: MassDecomposition
- MassDecompositionAlgorithm()
: MassDecompositionAlgorithm
- massdev_score
: OpenSwath_Scores
- massdiff
: PepXMLFile::AminoAcidModification
- masse_
: EdwardsLippertIterator
, SuffixArraySeqan
, SuffixArrayTrypticCompressed
- masses_
: PrecursorIonSelectionPreprocessing
- masses_container
: IMSIsotopeDistribution
- masses_iterator
: IMSIsotopeDistribution
- masses_type
: IMSAlphabet
- MassExplainer()
: MassExplainer
- MassIDMapping
: AccurateMassSearchEngine
- masskey_table_
: AccurateMassSearchEngine
- massMax_
: EdwardsLippertIterator
- massShifts
: SILACAnalyzer
- MASSSPECTRUM
: InstrumentSettings
- massTolDa_
: SuperHirnParameters
- massTolPpm_
: SuperHirnParameters
- MassTrace
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
, MassTrace
- MassTraceDetection()
: MassTraceDetection
- MassTraces
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
, FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
- MassType
: XTandemInfile
- MASTER_ID
: LCMS
, SHFeature
- match_peak_allowed_error_
: SequestInfile
- match_peak_count_
: SequestInfile
- match_peak_tolerance_
: SequestInfile
- matched_feature_list
: SHFeature
- matching_hmdb_ids_
: AccurateMassSearchResult
- matching_index_
: AccurateMassSearchResult
- matching_peaks
: TwoDOptimization::Data
- matching_peaks_
: TwoDOptimization
- matchMasses_()
: TOFCalibration
- matchModification_()
: PepXMLFile
, PepXMLFileMascot
, ProtXMLFile
- Matrix()
: Matrix< Value >
- matrix_
: DistanceMatrix< Value >
- MAX
: LPWrapper
- max
: FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
, PeakPickerCWT::PeakArea_
, LayerStatisticsDialog::MetaStatsValue_
- max_
: DIntervalBase< D >
, InRTRange< SpectrumType >
, InMzRange< PeakType >
, InIntensityRange< PeakType >
, Histogram< ValueType, BinSizeType >
, EGHModel
, BiGaussModel
, EmgModel
, Fitter1D
, GaussModel
, LmaGaussModel
, LmaIsotopeModel
, AxisWidget
- max_AA_per_mod_per_peptide_
: SequestInfile
- max_adduct_charge_
: IonizationSimulation
- max_charge_
: FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
, IsotopeWavelet
, IsotopeWaveletTransform< PeakType >
, LayerStatisticsDialog
- max_correctly_
: PosteriorErrorProbabilityModel
- max_decomp_weight_
: CompNovoIdentificationBase
- max_diff_mz_
: QTClusterFinder
- max_diff_ppm
: FeatureDistance::DistanceParams_
- max_diff_rt_
: QTClusterFinder
- max_difference
: FeatureDistance::DistanceParams_
- max_distance_
: QTCluster
- max_elements_
: LayerStatisticsDialog
- max_energy_
: IsInCollisionEnergyRange< SpectrumType >
- max_feature_intersection_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- max_float
: ParameterInformation
, Param::ParamEntry
- max_fwhm_
: ElutionPeakDetection
- max_hits_
: MascotRemoteQuery
- max_incorrectly_
: PosteriorErrorProbabilityModel
- max_int
: ParameterInformation
, Param::ParamEntry
- max_intensity
: IDDecoyProbability::Transformation_
- max_intensity_
: FeatureDistance
, SignalToNoiseEstimatorMeanIterative< Container >
, SignalToNoiseEstimatorMedian< Container >
, LayerStatisticsDialog
- max_intensity_bin
: IDDecoyProbability::Transformation_
- max_inter_scan_distance
: ProcessData
- max_internal_cleavage_sites_
: SequestInfile
- max_isotope_
: CompNovoIdentificationBase
, IsotopeDistribution
, ExtendedIsotopeFitter1D
, ExtendedIsotopeModel
, IsotopeFitter1D
, IsotopeModel
, LmaIsotopeFitter1D
, LmaIsotopeModel
, ModelFitter< PeakType, FeatureType >
- max_iteration_
: PrecursorIonSelection
, LevMarqFitter1D
, ModelFitter< PeakType, FeatureType >
, OptimizePick
, TwoDOptimization
- max_iterations_
: TraceFitter< PeakType >
- max_missing_trace_peaks_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- max_mods_per_peptide_
: ModificationDefinitionsSet
, SequestInfile
- max_mz_
: CompNovoIdentificationBase
- max_mz_cutoff_
: IsotopeWaveletTransform< PeakType >
- max_neutrals_
: MassExplainer
- max_num_peaks_considered_
: MapAlignmentAlgorithmPoseClustering
- max_num_peaks_per_pattern_
: IsotopeWaveletTransform< PeakType >
- max_number_aa_per_decomp_
: CompNovoIdentificationBase
- max_number_pivot_
: CompNovoIdentificationBase
- max_occurences_
: ModificationDefinition
- max_peak
: FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
- max_peak_distance_
: TwoDOptimization
- max_pep_lens_
: SequestOutfile
- max_precursor_charge_
: XTandemInfile
- max_precursor_isotope_deviation_
: IsobaricChannelExtractor
- max_quality_
: LayerStatisticsDialog
- max_rt
: ConfidenceScoring
, FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
- max_rt_span_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- max_scan_size_
: IsotopeWaveletTransform< PeakType >
- max_score
: IDDecoyProbability::Transformation_
- max_score_
: PrecursorIonSelection
- max_size()
: ConstRefVector< ContainerT >
- max_size_
: IsInIsolationWindowSizeRange< SpectrumType >
- max_span_
: MassExplainer
- max_subscore_number_
: CompNovoIdentificationBase
- MAX_TIME
: LogStreamBuf
- max_trace
: FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
- max_trace_length_
: MassTraceDetection
- max_valid_evalue_
: XTandemInfile
- maxBound()
: Histogram< ValueType, BinSizeType >
- maxFeatureChrg_
: SuperHirnParameters
- maxFeatureMZ_
: SuperHirnParameters
- maximal_mz_measurement_limit_
: IonizationSimulation
- maxInterScanRetentionTimeDistance_
: SuperHirnParameters
- MaxLikeliFitter1D()
: MaxLikeliFitter1D
- maxPosition()
: DIntervalBase< D >
- maxPositive()
: DPosition< D, TCoordinateType >
- maxptmsize_
: InspectInfile
- maxTR_
: SuperHirnParameters
- maxValue()
: Histogram< ValueType, BinSizeType >
- maxX()
: DIntervalBase< D >
- maxY()
: DIntervalBase< D >
- MAY
: CVMappingRule
- MD5
: SourceFile
- me_
: IsotopeWavelet
- mean
: SignalToNoiseEstimator< Container >::GaussianEstimate
, mean_and_stddev
, BasicStatistics< RealT >
- mean_
: BasicStatistics< RealT >
, IsotopeModel
, LmaIsotopeFitter1D
, LmaIsotopeModel
, BackgroundIntensityBin
- mean_and_stddev()
: mean_and_stddev
- mean_residuals_
: LinearRegression
- Measure
: IDMapper
- measure_
: IDMapper
- MEASURE_DA
: IDMapper
- MEASURE_PPM
: IDMapper
- measurement_start_
: Spectrum2DCanvas
, SpectrumCanvas
- measurement_start_point_
: Spectrum1DCanvas
- medium_channel_arginine_label_
: SILACLabeler
- MEDIUM_CHANNEL_ID_
: O18Labeler
- medium_channel_label_
: ICPLLabeler
- medium_channel_lysine_label_
: SILACLabeler
- MEDIUM_FEATURE_MAPID_
: ICPLLabeler
, SILACLabeler
- MEMBRANE
: IonSource
- MEMBRANESEPARATOR
: IonSource
- merge()
: Param
, QcMLFile
- mergeAllChannelFeatures_()
: SILACLabeler
- MergeBlocks
: SpectraMerger
- mergeConsensusMaps_()
: QuantitativeExperimentalDesign
- mergeFailed()
: TOPPASMergerVertex
- mergeFeatureMaps_()
: QuantitativeExperimentalDesign
- mergeFeatures()
: IsotopeWaveletTransform< PeakType >
, MS1FeatureMerger
- mergeFeatures_()
: ICPLLabeler
, ITRAQLabeler
, O18Labeler
, SILACLabeler
- mergeIDFiles_()
: QuantitativeExperimentalDesign
- mergeIntoLayer()
: Spectrum2DCanvas
- mergeMS2Fragments()
: ClusteredMS2ConsensusSpectrum
- mergeOverlappingWindows_()
: InclusionExclusionList
- mergePartitions()
: SVMWrapper
- mergeProteinAccessions_()
: BaseLabeler
- mergeProteinIdentificationsMaps_()
: BaseLabeler
- mergeSpectra_()
: SpectraMerger
- mergeSpectraBlockWise()
: SpectraMerger
- mergeSpectraPrecursors()
: SpectraMerger
- MESI
: IonSource
- message_label_
: IDEvaluationBase
, TOPPASBase
, TOPPViewBase
- message_level
: LPWrapper::SolverParam
- messageReady()
: TOPPASScene
- meta
: MzMLHandler< MapType >::BinaryData
- meta_
: MetaInfoInterface
- meta_array_stats_
: LayerStatisticsDialog
- META_DATA
: DataFilters
- meta_id_descs_
: MzDataHandler< MapType >
- meta_indices_
: DataFilters
- meta_ms_experiment_
: SpectrumAccessOpenMSCached
- meta_name
: DataFilters::DataFilter
- meta_stats_
: LayerStatisticsDialog
- metabo_iso_noisemodel_
: FeatureFindingMetabo
- metabuttons_
: MetaInfoVisualizer
- metadata_only_
: FeatureFileOptions
, PeakFileOptions
- MetaDataBrowser()
: MetaDataBrowser
- metadataDatabaseDialog()
: TOPPViewBase
- metadataFileDialog()
: TOPPViewBase
- MetaInfo()
: MetaInfo
- MetaInfoDescription()
: MetaInfoDescription
- metainfodescription_name_
: MetaInfoDescriptionVisualizer
- MetaInfoDescriptionVisualizer()
: MetaInfoDescriptionVisualizer
- MetaInfoInterface()
: MetaInfoInterface
- metainfoptr_
: MetaInfoVisualizer
- MetaInfoRegistry()
: MetaInfoRegistry
- MetaInfoVisualizer()
: MetaInfoVisualizer
- MetaIterator_
: LayerStatisticsDialog
- metalabels_
: MetaInfoVisualizer
- metaPasses_()
: DataFilters
- metaRegistry()
: MetaInfoInterface
- MetaStatsValue_()
: LayerStatisticsDialog::MetaStatsValue_
- metavalue_key_
: HasMetaValue< MetaContainer >
- metaValueExists()
: MetaInfoInterface
- method_
: Normalizer
- method_of_combination_
: AcquisitionInfo
- methods_
: HasActivationMethod< SpectrumType >
- MGF
: FileTypes
- MICROCHANNELPLATEDETECTOR
: IonDetector
- MIN
: LPWrapper
- min
: LayerStatisticsDialog::MetaStatsValue_
- min_
: DIntervalBase< D >
, InRTRange< SpectrumType >
, InMzRange< PeakType >
, InIntensityRange< PeakType >
, Histogram< ValueType, BinSizeType >
, EGHModel
, BiGaussModel
, EmgModel
, Fitter1D
, GaussModel
, LmaGaussModel
, LmaIsotopeModel
, AxisWidget
- min_aa_weight_
: CompNovoIdentificationBase
- min_charge_
: LayerStatisticsDialog
- min_detect_
: DetectabilitySimulation
- min_element_
: DistanceMatrix< Value >
- min_elements_
: LayerStatisticsDialog
- min_energy_
: IsInCollisionEnergyRange< SpectrumType >
- min_float
: ParameterInformation
, Param::ParamEntry
- min_fwhm_
: ElutionPeakDetection
- min_int
: ParameterInformation
, Param::ParamEntry
- min_intensity_
: LayerStatisticsDialog
- min_isotope_fit_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- min_mz_
: CompNovoIdentificationBase
- min_pep_ids_
: PrecursorIonSelection
- min_precursor_intensity_
: IsobaricChannelExtractor
- min_precursor_purity_
: IsobaricChannelExtractor
- min_quality_
: LayerStatisticsDialog
- min_reporter_intensity_
: IsobaricChannelExtractor
- min_required_elements_
: SignalToNoiseEstimatorMeanIterative< Container >
, SignalToNoiseEstimatorMedian< Container >
- min_rt
: ConfidenceScoring
- min_rt_span_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- min_run_occur_
: MapAlignmentAlgorithmIdentification
- min_sample_rate_
: MassTraceDetection
- min_score
: IDDecoyProbability::Transformation_
- min_size_
: IsInIsolationWindowSizeRange< SpectrumType >
- min_spacing_
: IsotopeWaveletTransform< PeakType >
- min_spectra_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- min_trace_length_
: MassTraceDetection
- min_trace_score_
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- minBound()
: Histogram< ValueType, BinSizeType >
- minFeatureChrg_
: SuperHirnParameters
- minFeatureMZ_
: SuperHirnParameters
- minimal_mz_measurement_limit_
: IonizationSimulation
- MINIMAL_PEP_PROPHET_THERSHOLD
: LCMS
- minimal_protein_list_accessions_
: PSProteinInference
- Minimum_()
: ConsensusID
- minIntensity_
: SuperHirnParameters
- minNbClusterMembers_
: SuperHirnParameters
- minNegative()
: DPosition< D, TCoordinateType >
- minor_version_
: MascotXMLHandler
- minPosition()
: DIntervalBase< D >
- minPositive()
: DPosition< D, TCoordinateType >
- minTR_
: SuperHirnParameters
- minValue()
: Histogram< ValueType, BinSizeType >
- minX()
: DIntervalBase< D >
- minY()
: DIntervalBase< D >
- mip_gap
: LPWrapper::SolverParam
- mirror_mode_
: Spectrum1DCanvas
- mirrorModeActive()
: Spectrum1DCanvas
- mismatchscore_
: MapAlignmentAlgorithmSpectrumAlignment
- missed_cleavages
: ProteinIdentification::SearchParameters
, SILACAnalyzer
- missed_cleavages_
: EnzymaticDigestion
, MascotInfile
, PeptideEvidence
, ProteinIdentificationVisualizer
- MISSING_PARAMETERS
: TOPPBase
- MissingInformation()
: MissingInformation
- ml1_
: AcqusHandler
- ml1s_
: TOFCalibration
- ml2_
: AcqusHandler
- ml2s_
: TOFCalibration
- ml3_
: AcqusHandler
- ml3s_
: TOFCalibration
- MockFeature()
: MockFeature
- MockMRMFeature()
: MockMRMFeature
- MockSignalToNoise()
: MockSignalToNoise
- MockTransitionGroup()
: MockTransitionGroup
- mod
: MzTabUnitIdMetaData
- mod_
: ModificationDefinition
- mod_combinations
: ModificationMassesResult
- mod_def_set_
: OMSSAXMLFile
, XTandemXMLFile
- mod_formula_idx
: ModificationMassesResult
- MOD_LIST
: MS2Info
- mod_masses
: ModificationMassesResult
- mod_or_subst_identifier_
: MzTabModification
- mode_
: HasScanMode< SpectrumType >
- model2D_
: ModelFitter< PeakType, FeatureType >
- model_
: SVMWrapper
, PSLPFormulation
, Instrument
, InstrumentVisualizer
, TransformationDescription
- model_data_
: EnzymaticDigestion
- model_desc_
: FeatureXMLFile
, Feature
- model_deviation
: SILACAnalyzer
- model_deviation_
: SILACFilter
- model_type_
: TransformationDescription
, TransformationXMLFile
- ModelDescription()
: ModelDescription< D >
- ModelFitter()
: ModelFitter< PeakType, FeatureType >
- modifiable
: LayerData
- Modification()
: Modification
- modification_
: Residue
, UnimodXMLHandler
- modification_names_
: ModificationsDB
- modification_output_method_
: SuffixArrayPeptideFinder
- modification_table_
: ModifierRep
- modificationAA_
: ModificationVisualizer
, TaggingVisualizer
- ModificationDefinition()
: ModificationDefinition
- ModificationDefinitionsSet()
: ModificationDefinitionsSet
- modificationmass_
: ModificationVisualizer
, TaggingVisualizer
- modificationname_
: ModificationVisualizer
, TaggingVisualizer
- modifications
: LightPeptide
, Peptide
, MzTabProteinSectionRow
, MzTabPeptideSectionRow
, MzTabSmallMoleculeSectionRow
- modifications_
: OMSSAXMLFile
, XTandemInfile
, UnimodXMLHandler
- modifications_per_peptide_
: InspectInfile
- ModificationsDB()
: ModificationsDB
- modificationspecificity_
: ModificationVisualizer
, TaggingVisualizer
- modificationStatus_()
: SpectrumCanvas
- ModificationType
: MRMFeatureFinderScoring
- ModificationVisualizer()
: ModificationVisualizer
- modified
: LayerData
, ParamEditorDelegate
, ParamEditor
- modified_
: ParamEditor
- modified_peptides_
: MascotXMLHandler
- modified_residues_
: ResidueDB
- ModifierRep()
: ModifierRep
- modify_strings_
: SVOutStream
- modifyStrings()
: SVOutStream
- mods
: Peptide
- mods_
: ModificationsDB
, MascotInfile
, PepNovoInfile
, MSQuantifications::Assay
- mods_and_keys_
: PepNovoInfile
- mods_map_
: OMSSAXMLFile
- mods_to_num_
: OMSSAXMLFile
- module_
: RtIterator< FeaFiModuleType >
, MzIterator< FeaFiModuleType >
, IntensityIterator< FeaFiModuleType >
, IntensityLess< FeaFiModuleType >
- monitorFileChanged_()
: FileWatcher
- MONO
: WeightWrapper
- mono_mass
: MS2Info
- mono_mass_
: ResidueModification
, UnimodXMLHandler
- mono_mass_delta
: Peptide::Modification
- MONO_MZ
: MS2Info
, SHFeature
- MONO_MZ_END
: SHFeature
- MONO_MZ_ORIGINAL
: SHFeature
- MONO_MZ_START
: SHFeature
- mono_weight_
: Element
, Residue
- MONOISOTOPIC
: ProteinIdentification
, XTandemInfile
- monoisotopic_mass_known_
: LmaIsotopeFitter1D
- monoisotopic_mz_
: LmaIsotopeFitter1D
, ExtendedIsotopeFitter1D
, IsotopeModel
, LmaIsotopeModel
, ExtendedIsotopeModel
, ModelFitter< PeakType, FeatureType >
- MorphologicalFilter()
: MorphologicalFilter
- mouse_move_begin_
: Spectrum3DOpenGLCanvas
- mouse_move_end_
: Spectrum3DOpenGLCanvas
- mouseDoubleClickEvent()
: MultiGradientSelector
, EnhancedTabBar
, Spectrum2DCanvas
, TOPPASTabBar
, TOPPASVertex
, TOPPASEdge
, TOPPASInputFileListVertex
, TOPPASToolVertex
, TOPPASMergerVertex
- mouseMoveEvent()
: MultiGradientSelector
, TOPPASTreeView
, TOPPASVertex
, HistogramWidget
, Spectrum2DCanvas
, Spectrum1DCanvas
, Spectrum3DOpenGLCanvas
- mousePressEvent()
: Spectrum2DCanvas
, ColorSelector
, MultiGradientSelector
, TOPPASTreeView
, Spectrum1DCanvas
, TOPPASVertex
, Spectrum3DOpenGLCanvas
, HistogramWidget
- mouseReleaseEvent()
: HistogramWidget
, Spectrum1DCanvas
, Spectrum3DOpenGLCanvas
, Spectrum2DCanvas
, TOPPASVertex
, MultiGradientSelector
- move()
: Annotation1DPeakItem
, Annotation1DDistanceItem
, Annotation1DItem
, Annotation1DTextItem
- moveCurrentItem()
: TOPPASInputFilesDialog
- moveMzDown_()
: SimpleExtender< PeakType, FeatureType >
- moveMzUp_()
: SimpleExtender< PeakType, FeatureType >
- moveNewEdgeTo_()
: TOPPASVertex
- moveRtDown_()
: SimpleExtender< PeakType, FeatureType >
- moveRtUp_()
: SimpleExtender< PeakType, FeatureType >
- moveSelectedItems()
: TOPPASScene
- moving_annotations_
: Spectrum1DCanvas
- moving_splitter_
: HistogramWidget
- MOVINGBELT
: IonSource
- MOVINGWIRE
: IonSource
- mp_
: SvmTheoreticalSpectrumGenerator
- MPI
: IonSource
- mQ_()
: TOFCalibration
- mQAv_()
: TOFCalibration
- MRMDecoy()
: MRMDecoy
- MRMFeature()
: MRMFeature
- mrmfeature_
: MRMFeatureOpenMS
- MRMFeatureFinderScoring()
: MRMFeatureFinderScoring
- MRMFeatureListType
: MRMTransitionGroup< SpectrumType, TransitionType >
- MRMFeatureOpenMS()
: MRMFeatureOpenMS
- MRMFragmentSelection()
: MRMFragmentSelection
- mrmscore_
: MRMFeatureFinderScoring
- MRMTransitionGroup()
: MRMTransitionGroup< SpectrumType, TransitionType >
- MRMTransitionGroupPicker()
: MRMTransitionGroupPicker
- MRMTransitionGroupType
: MRMFeatureFinderScoring
- ms1FeatureClustering()
: SuperHirnParameters
- ms1FeatureClustering_
: SuperHirnParameters
- MS1FeatureMerger()
: MS1FeatureMerger
- ms1FeatureMergingTrTolerance_
: SuperHirnParameters
- MS1LABEL
: MSQuantifications
- ms1PeakAreaTrResolution_
: SuperHirnParameters
- MS1SPECTRUM
: InstrumentSettings
- ms1TRResolution_
: SuperHirnParameters
- MS2
: FileTypes
- MS2_MZ_TOLERANCE
: MS2ConsensusSpectrum
- MS2_SCANS
: SHFeature
- MS2_TYPE_TAG
: MS2Info
- MS2ConsensusSpectrum()
: MS2ConsensusSpectrum
- MS2Feature()
: MS2Feature
- MS2File()
: MS2File
- MS2Fragment()
: MS2Fragment
- MS2FragmentPeaks
: MS2ConsensusSpectrum
- MS2Info()
: MS2Info
- MS2LABEL
: MSQuantifications
- MS2Scans
: ClusteredMS2ConsensusSpectrum
- MS2TraceFeature
: SHFeature
- ms_experiment_
: SpectrumAccessOpenMS
- ms_file_
: MzTabSpectraRef
- ms_file_format
: MzTabUnitIdMetaData
- ms_file_id_format
: MzTabUnitIdMetaData
- ms_file_location
: MzTabUnitIdMetaData
- ms_level
: SpectrumMeta
- ms_level_
: MSSpectrum< PeakT >
- ms_levels_
: PeakFileOptions
, MSExperiment< PeakT, ChromatogramPeakT >
- MSChromatogram()
: MSChromatogram< PeakT >
- MSChromatogramType
: SpectrumAccessOpenMS
- msd_group
: ProteinResolver::ProteinEntry
, ProteinResolver::PeptideEntry
- msd_groups
: ProteinResolver::ISDGroup
- msds
: ProteinResolver::ResolverResult
- MSExperiment()
: MSExperiment< PeakT, ChromatogramPeakT >
- MSExperimentType
: SpectrumAccessOpenMS
, SpectrumAccessOpenMSCached
- msFilter_()
: MapAlignmentAlgorithmSpectrumAlignment
- MsInspectFile()
: MsInspectFile
- MSNSPECTRUM
: InstrumentSettings
- MSP
: FileTypes
- MSPeak()
: MSPeak
- MSPFile()
: MSPFile
- msq
: SILACAnalyzer
- msq_
: MzQuantMLHandler
- MSQuantifications()
: MSQuantifications
- MSSim()
: MSSim
- MSSpectrum()
: MSSpectrum< PeakT >
- MSSpectrumType
: SpectrumAccessOpenMS
, SpectrumAccessOpenMSCached
- mt_snr_filtering_
: ElutionPeakDetection
- mu_
: PrecursorIonSelectionPreprocessing
- multicharge_
: InspectInfile
- MULTICOLLECTOR
: IonDetector
- MultiGradient()
: MultiGradient
- MultiGradientSelector()
: MultiGradientSelector
- MULTIPLE
: ResidueModification
- MUST
: CVMappingRule
- mw_
: HistogramDialog
- myLog2_()
: IsotopeWavelet
- myPow()
: IsotopeWavelet
- myPow2_()
: IsotopeWavelet
- mz
: IsotopeWaveletTransform< PeakType >::BoxElement
, cudaHelp
- MZ
: ModelFitter< PeakType, FeatureType >
, QTClusterFinder
, FeatureFinderAlgorithmMRM< PeakType, FeatureType >
, StablePairFinder
- mz
: SILACPoint
, FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
- MZ
: MSPeak
, Peak2D
- mz_
: MascotInfile
- MZ_
: InclusionExclusionList::IEWindow
- mz_
: PepXMLFile
, Product
, PrecursorVisualizer
- mz_32_bit_
: PeakFileOptions
- mz_as_ppm_
: InclusionExclusionList::WindowDistance_
- MZ_begin
: IsotopeWaveletTransform< PeakType >::BoxElement
- MZ_CLUSTER
: ProcessData
- MZ_end
: IsotopeWaveletTransform< PeakType >::BoxElement
- mz_error_mean_
: RawMSSignalSimulation
- mz_error_stddev_
: RawMSSignalSimulation
- mz_input_data_
: ModelFitter< PeakType, FeatureType >
- mz_label_
: TOPPViewBase
- mz_left_
: InPrecursorMZRange< SpectrumType >
- mz_max_
: SpectraMerger::SpectraDistance_
, InclusionExclusionList::WindowDistance_
- mz_model
: Summary
- mz_peptide_separations_
: SILACFilter
- mz_position
: PeakShape
- mz_positions
: SILACPoint
- mz_range_
: FeatureFileOptions
, PeakFileOptions
- mz_right_
: InPrecursorMZRange< SpectrumType >
- mz_score
: FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
- MZ_series
: ProcessData
- MZ_series_ITERATOR
: ProcessData
- mz_stat_
: ModelFitter< PeakType, FeatureType >
- mz_stdev
: Summary
- mz_to_x_axis_
: SpectrumCanvas
- mz_tol_
: PepXMLFile
- mz_tolerance_
: PrecursorIonSelection
, IDMapper
- mz_tolerance_unit_
: PrecursorIonSelection
- MZBegin()
: MSSpectrum< PeakT >
, IsotopeWaveletTransform< PeakType >::TransSpectrum
, MSSpectrum< PeakT >
- mzClusters
: MS1FeatureMerger
- mzCoord_
: BackgroundIntensityBin
- MZDATA
: FileTypes
- MzDataFile()
: MzDataFile
- MzDataHandler()
: MzDataHandler< MapType >
- MzDataValidator()
: MzDataValidator
- MZEnd()
: MSSpectrum< PeakT >
, IsotopeWaveletTransform< PeakType >::TransSpectrum
, MSSpectrum< PeakT >
- MZIDENTML
: FileTypes
- MzIdentMLFile()
: MzIdentMLFile
- MzIdentMLHandler()
: MzIdentMLHandler
- MzIdentMLValidator()
: MzIdentMLValidator
- mzIsotopesStDev_
: ConsensusIsotopePattern
- MzIterator()
: MzIterator< FeaFiModuleType >
- MZML
: FileTypes
- MzMLFile()
: MzMLFile
- MzMLHandler()
: MzMLHandler< MapType >
- MzMLValidator()
: MzMLValidator
- MZQUANTML
: FileTypes
- MzQuantMLFile()
: MzQuantMLFile
- MzQuantMLHandler()
: MzQuantMLHandler
- MzQuantMLValidator()
: MzQuantMLValidator
- MzTab()
: MzTab
- MzTabDoubleList()
: MzTabDoubleList
- MzTabFile()
: MzTabFile
- MzTabNullAbleBase()
: MzTabNullAbleBase
- MzTabNullNaNAndInfAbleBase()
: MzTabNullNaNAndInfAbleBase
- MzTabProteinSectionRow()
: MzTabProteinSectionRow
- MzTabSpectraRef()
: MzTabSpectraRef
- MzTabStringList()
: MzTabStringList
- mzTolPpm_
: SuperHirnParameters
- mzToXAxis()
: SpectrumCanvas
- MZXML
: FileTypes
- MzXMLFile()
: MzXMLFile
- MzXMLHandler()
: MzXMLHandler< MapType >