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AccurateMassSearchEngine Member List

This is the complete list of members for AccurateMassSearchEngine, including all inherited members.

AccurateMassSearchEngine()AccurateMassSearchEngine
begin_ProgressLoggermutableprotected
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
computeCosineSim_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y)AccurateMassSearchEngineprivate
computeEuclideanDist_(const std::vector< DoubleReal > &x, const std::vector< DoubleReal > &y)AccurateMassSearchEngineprivate
computeIsotopePatternSimilarity_(const Feature &, const EmpiricalFormula &)AccurateMassSearchEngineprivate
computeNeutralMassFromAdduct_(const DoubleReal &, const String &, DoubleReal &, DoubleReal &)AccurateMassSearchEngineprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
exportMzTab_(const QueryResultsTable &, MzTab &)AccurateMassSearchEngineprivate
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
hmdb_properties_mapping_AccurateMassSearchEngineprivate
HMDBPropsMapping typedefAccurateMassSearchEngineprivate
ion_mode_AccurateMassSearchEngineprivate
iso_similarity_AccurateMassSearchEngineprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
mass_error_unit_AccurateMassSearchEngineprivate
mass_error_value_AccurateMassSearchEngineprivate
mass_formula_mapping_AccurateMassSearchEngineprivate
mass_id_mapping_AccurateMassSearchEngineprivate
MassIDMapping typedefAccurateMassSearchEngineprivate
masskey_table_AccurateMassSearchEngineprivate
neg_adducts_AccurateMassSearchEngineprivate
neg_adducts_fname_AccurateMassSearchEngineprivate
NONE enum valueProgressLogger
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
parseAdductsFile_(const String &)AccurateMassSearchEngineprivate
parseAdductString_(const String &, std::vector< String > &)AccurateMassSearchEngineprivate
parseMappingFile_(const String &)AccurateMassSearchEngineprivate
parseStructMappingFile_(const String &)AccurateMassSearchEngineprivate
pos_adducts_AccurateMassSearchEngineprivate
pos_adducts_fname_AccurateMassSearchEngineprivate
ProgressLogger()ProgressLogger
queryByConsensusFeature(const ConsensusFeature &, const Size &, const Size &, std::vector< AccurateMassSearchResult > &)AccurateMassSearchEngine
queryByFeature(const Feature &, const Size &, std::vector< AccurateMassSearchResult > &)AccurateMassSearchEngine
queryByMass(const DoubleReal &, const DoubleReal &, std::vector< AccurateMassSearchResult > &)AccurateMassSearchEngine
QueryResultsTable typedefAccurateMassSearchEngineprivate
recursion_depth_ProgressLoggerprotectedstatic
run(const FeatureMap<> &, MzTab &)AccurateMassSearchEngine
run(const ConsensusMap &, MzTab &)AccurateMassSearchEngine
searchMass_(const DoubleReal &, std::vector< Size > &hit_indices)AccurateMassSearchEngineprivate
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()AccurateMassSearchEngineprotectedvirtual
value_ProgressLoggermutableprotected
warn_empty_defaults_DefaultParamHandlerprotected
~AccurateMassSearchEngine()AccurateMassSearchEnginevirtual
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5