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ItraqChannelExtractor.h
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34 
35 #ifndef OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H
36 #define OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H
37 
38 #include <vector>
42 
43 namespace OpenMS
44 {
45 
57  class OPENMS_DLLAPI ItraqChannelExtractor :
58  public DefaultParamHandler,
59  public ItraqConstants
60  {
61 
62 public:
63 
65 
68 
70  explicit ItraqChannelExtractor(Int itraq_type);
71 
73  ItraqChannelExtractor(Int itraq_type, const Param & param);
74 
77 
79  ItraqChannelExtractor & operator=(const ItraqChannelExtractor & rhs);
80 
81 
86  void run(const MSExperiment<Peak1D> & ms_exp_data, ConsensusMap & consensus_map);
87 
88 protected:
89 
90  void setDefaultParams_();
91 
93  void updateMembers_();
94 
95 
96 private:
97 
99  void init_();
100 
103 
107 
108  }; // !class
109 
110 } // !namespace
111 
112 #endif // OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H
A container for consensus elements.
Definition: ConsensusMap.h:60
Some constants used throughout iTRAQ classes.
Definition: ItraqConstants.h:53
Int itraq_type_
set to either ItraqConstants::FOURPLEX, ItraqConstants::EIGHTPLEX, or ItraqConstants::TMT_SIXPLEX ...
Definition: ItraqChannelExtractor.h:102
ItraqConstants::ChannelMapType ChannelMapType
Definition: ItraqChannelExtractor.h:64
Management and storage of parameters / INI files.
Definition: Param.h:69
[experimental class] extracts the iTRAQ channels from tandem MS data and stores intensity values in a...
Definition: ItraqChannelExtractor.h:57
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:90
int Int
Signed integer type.
Definition: Types.h:100
ChannelMapType channel_map_
Definition: ItraqChannelExtractor.h:106
Map class based on the STL map (containing serveral convenience functions)
Definition: Map.h:50

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:15 using doxygen 1.8.5