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SILACAnalyzer Member List

This is the complete list of members for SILACAnalyzer, including all inherited members.

allow_missing_peaksSILACAnalyzerprivate
begin_ProgressLoggermutableprotected
calculateLabelsAndMassShifts(std::map< String, DoubleReal > label_identifiers)SILACAnalyzer
charge_maxSILACAnalyzerprivate
charge_minSILACAnalyzerprivate
clusterData(const MSExperiment<> &, const PeakWidthEstimator::Result &, std::vector< Clustering * > &, std::vector< std::vector< SILACPattern > > &data)SILACAnalyzer
Clustering typedefSILACAnalyzerprivate
CMD enum valueProgressLogger
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
estimatePeakWidth(const MSExperiment< Peak1D > &exp)SILACAnalyzer
filterData(MSExperiment< Peak1D > &exp, const PeakWidthEstimator::Result &peak_width, std::vector< std::vector< SILACPattern > > &data)SILACAnalyzer
generateClusterConsensusByCluster(ConsensusMap &, const Clustering &) const SILACAnalyzer
generateClusterConsensusByPattern(ConsensusMap &, const Clustering &, UInt &cluster_id) const SILACAnalyzer
generateClusterDebug(std::ostream &out, const Clustering &clustering, UInt &cluster_id) const SILACAnalyzer
generateClusterFeatureByCluster(FeatureMap<> &, const Clustering &) const SILACAnalyzer
generateFilterConsensusByPattern(ConsensusMap &, const std::vector< SILACPattern > &) const SILACAnalyzer
generateSingleConsensusByPattern(const SILACPattern &) const SILACAnalyzerprivate
getLogType() const ProgressLogger
getMassShifts()SILACAnalyzerinline
getSILAClabels()SILACAnalyzerinline
GUI enum valueProgressLogger
inSILACAnalyzerprivate
in_filtersSILACAnalyzerprivate
initialize(String selected_labels_, UInt charge_min_, UInt charge_max_, Int missed_cleavages_, UInt isotopes_per_peptide_min_, UInt isotopes_per_peptide_max_, DoubleReal rt_threshold_, DoubleReal rt_min_, DoubleReal intensity_cutoff_, DoubleReal intensity_correlation_, DoubleReal model_deviation_, bool allow_missing_peaks_, std::map< String, DoubleReal > label_identifiers)SILACAnalyzerinline
intensity_correlationSILACAnalyzerprivate
intensity_cutoffSILACAnalyzerprivate
isotopes_per_peptide_maxSILACAnalyzerprivate
isotopes_per_peptide_minSILACAnalyzerprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
massShiftsSILACAnalyzerprivate
missed_cleavagesSILACAnalyzerprivate
model_deviationSILACAnalyzerprivate
msqSILACAnalyzerprivate
NONE enum valueProgressLogger
outSILACAnalyzerprivate
out_clustersSILACAnalyzerprivate
out_debugSILACAnalyzerprivate
out_featuresSILACAnalyzerprivate
out_filtersSILACAnalyzerprivate
out_mzqSILACAnalyzerprivate
ProgressLogger()ProgressLogger
readConsensus(const String &filename, ConsensusMap &in) const SILACAnalyzerinline
readFilterConsensusByPattern(ConsensusMap &, std::vector< std::vector< SILACPattern > > &)SILACAnalyzer
recursion_depth_ProgressLoggerprotectedstatic
rt_minSILACAnalyzerprivate
rt_thresholdSILACAnalyzerprivate
run_all(MSExperiment< Peak1D > &exp, ConsensusMap &out_map)SILACAnalyzerinline
selectColor(UInt nr)SILACAnalyzerstatic
selected_labelsSILACAnalyzerprivate
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
SILACAnalyzer()SILACAnalyzerinline
SILAClabelsSILACAnalyzerprivate
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
type_ProgressLoggermutableprotected
value_ProgressLoggermutableprotected
writeConsensus(const String &filename, ConsensusMap &out) const SILACAnalyzerinline
writeFeatures(const String &filename, FeatureMap<> &out) const SILACAnalyzerinline
writeMzQuantML(const String &filename, MSQuantifications &msq) const SILACAnalyzerinline
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5