Home
·
Classes
·
Annotated Classes
·
Modules
·
Members
·
Namespaces
·
Related Pages
- m -
m_ :
mean_and_stddev
,
EdwardsLippertIterator
m_2H :
RNPxlReportRow
m_3H :
RNPxlReportRow
m_4H :
RNPxlReportRow
m_features :
MockMRMFeature
m_H :
RNPxlReportRow
m_intensity :
MockFeature
,
MockMRMFeature
m_intensity_vec :
MockFeature
m_library_intensities :
MockTransitionGroup
m_native_ids :
MockTransitionGroup
m_rt :
MockFeature
,
MockMRMFeature
m_rt_vec :
MockFeature
m_size :
MockTransitionGroup
m_sn_value :
MockSignalToNoise
magnetic_field_strength_ :
MassAnalyzer
magnetic_fs_ :
MassAnalyzerVisualizer
mainlayout_ :
BaseVisualizerGUI
major_version_ :
MascotXMLHandler
maldi_probabilities_ :
IonizationSimulation
map_ :
INIUpdater
,
FeatureXMLFile
,
FeaFiModule< PeakType, FeatureType >
,
FeatureFinderAlgorithm< PeakType, FeatureType >
,
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
,
FeatureFinderAlgorithmSH< PeakType, FeatureType >
,
TOPPASResources
map_as_2d_disabled_ :
TOPPViewOpenDialog
map_index_ :
FeatureHandle
,
GridFeature
map_label_ :
FeatureDeconvolution
map_label_inverse_ :
FeatureDeconvolution
map_points_ :
ConvexHull2D
map_precursor_to_chrom_idx_cache_ :
SpectraViewWidget
map_to_vec_index_ :
IsobaricNormalizer
map_unitid_to_meta_data_ :
MzTab
map_unitid_to_peptide_data_ :
MzTab
map_unitid_to_protein_data_ :
MzTab
map_unitid_to_small_molecule_data_ :
MzTab
mapping :
MappingParam
mapping_ :
MzMLHandler< MapType >
,
SemanticValidator
mapping_rules_ :
CVMappings
margin_ :
AxisWidget
,
HistogramWidget
,
MultiGradientSelector
marker_ions :
RNPxlReportRow
markers_ :
MarkerMower
mascot_xml_ :
MascotRemoteQuery
mass :
IMSIsotopeDistribution::Peak
,
PepXMLFile::AminoAcidModification
,
MS1Signal
mass_ :
Compomer
,
Modification
,
Sample
,
CentroidPeak
mass_analyzers_ :
Instrument
mass_decomp_algorithm_ :
CompNovoIdentificationBase
mass_diff_ :
ChargePair
mass_error_ppm_ :
MassTraceDetection
mass_error_unit_ :
AccurateMassSearchEngine
mass_error_value_ :
AccurateMassSearchEngine
mass_formula_mapping_ :
AccurateMassSearchEngine
mass_id_mapping_ :
AccurateMassSearchEngine
mass_in_lcms_ :
IntegerMassDecomposer< ValueType, DecompositionValueType >
mass_mapping_ :
ModifierRep
mass_separations :
SILACFiltering::BlacklistEntry
mass_separations_ :
SILACFilter
mass_shift_ :
Tagging
mass_shifts :
SILACPoint
mass_to_charge :
MzTabPeptideSectionRow
,
MzTabSmallMoleculeSectionRow
mass_type :
ProteinIdentification::SearchParameters
mass_type_ :
MascotInfile
,
ProteinIdentificationVisualizer
mass_type_fragment_ :
SequestInfile
mass_type_parent_ :
SequestInfile
mass_window_width_ :
IsotopeDistributionCache
,
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
massdev_score :
OpenSwath_Scores
massdiff :
PepXMLFile::AminoAcidModification
masse_ :
EdwardsLippertIterator
,
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
masses_ :
PrecursorIonSelectionPreprocessing
masskey_table_ :
AccurateMassSearchEngine
massMax_ :
EdwardsLippertIterator
massShifts :
SILACAnalyzer
massTolDa_ :
SuperHirnParameters
massTolPpm_ :
SuperHirnParameters
MASTER_ID :
LCMS
,
SHFeature
match_peak_allowed_error_ :
SequestInfile
match_peak_count_ :
SequestInfile
match_peak_tolerance_ :
SequestInfile
matched_feature_list :
SHFeature
matching_hmdb_ids_ :
AccurateMassSearchResult
matching_index_ :
AccurateMassSearchResult
matching_peaks :
TwoDOptimization::Data
matching_peaks_ :
TwoDOptimization
matrix_ :
DistanceMatrix< Value >
max :
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
,
PeakPickerCWT::PeakArea_
,
LayerStatisticsDialog::MetaStatsValue_
max_ :
DIntervalBase< D >
,
InRTRange< SpectrumType >
,
InMzRange< PeakType >
,
InIntensityRange< PeakType >
,
Histogram< ValueType, BinSizeType >
,
EGHModel
,
BiGaussModel
,
EmgModel
,
Fitter1D
,
GaussModel
,
LmaGaussModel
,
LmaIsotopeModel
,
AxisWidget
max_AA_per_mod_per_peptide_ :
SequestInfile
max_adduct_charge_ :
IonizationSimulation
max_charge_ :
FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
,
IsotopeWavelet
,
IsotopeWaveletTransform< PeakType >
,
LayerStatisticsDialog
max_correctly_ :
PosteriorErrorProbabilityModel
max_decomp_weight_ :
CompNovoIdentificationBase
max_diff_mz_ :
QTClusterFinder
max_diff_ppm :
FeatureDistance::DistanceParams_
max_diff_rt_ :
QTClusterFinder
max_difference :
FeatureDistance::DistanceParams_
max_distance_ :
QTCluster
max_elements_ :
LayerStatisticsDialog
max_energy_ :
IsInCollisionEnergyRange< SpectrumType >
max_feature_intersection_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
max_float :
ParameterInformation
,
Param::ParamEntry
max_fwhm_ :
ElutionPeakDetection
max_hits_ :
MascotRemoteQuery
max_incorrectly_ :
PosteriorErrorProbabilityModel
max_int :
ParameterInformation
,
Param::ParamEntry
max_intensity :
IDDecoyProbability::Transformation_
max_intensity_ :
FeatureDistance
,
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
,
LayerStatisticsDialog
max_intensity_bin :
IDDecoyProbability::Transformation_
max_inter_scan_distance :
ProcessData
max_internal_cleavage_sites_ :
SequestInfile
max_isotope_ :
CompNovoIdentificationBase
,
IsotopeDistribution
,
ExtendedIsotopeFitter1D
,
ExtendedIsotopeModel
,
IsotopeFitter1D
,
IsotopeModel
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
,
ModelFitter< PeakType, FeatureType >
max_iteration_ :
PrecursorIonSelection
,
LevMarqFitter1D
,
ModelFitter< PeakType, FeatureType >
,
OptimizePick
,
TwoDOptimization
max_iterations_ :
TraceFitter< PeakType >
max_missing_trace_peaks_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
max_mods_per_peptide_ :
ModificationDefinitionsSet
,
SequestInfile
max_mz_ :
CompNovoIdentificationBase
max_mz_cutoff_ :
IsotopeWaveletTransform< PeakType >
max_neutrals_ :
MassExplainer
max_num_peaks_considered_ :
MapAlignmentAlgorithmPoseClustering
max_num_peaks_per_pattern_ :
IsotopeWaveletTransform< PeakType >
max_number_aa_per_decomp_ :
CompNovoIdentificationBase
max_number_pivot_ :
CompNovoIdentificationBase
max_occurences_ :
ModificationDefinition
max_peak :
FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
max_peak_distance_ :
TwoDOptimization
max_pep_lens_ :
SequestOutfile
max_precursor_charge_ :
XTandemInfile
max_precursor_isotope_deviation_ :
IsobaricChannelExtractor
max_quality_ :
LayerStatisticsDialog
max_rt :
ConfidenceScoring
,
FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType >
max_rt_span_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
max_scan_size_ :
IsotopeWaveletTransform< PeakType >
max_score :
IDDecoyProbability::Transformation_
max_score_ :
PrecursorIonSelection
max_size_ :
IsInIsolationWindowSizeRange< SpectrumType >
max_span_ :
MassExplainer
max_subscore_number_ :
CompNovoIdentificationBase
MAX_TIME :
LogStreamBuf
max_trace :
FeatureFinderAlgorithmPickedHelperStructs::MassTraces< PeakType >
max_trace_length_ :
MassTraceDetection
max_valid_evalue_ :
XTandemInfile
maxFeatureChrg_ :
SuperHirnParameters
maxFeatureMZ_ :
SuperHirnParameters
maximal_mz_measurement_limit_ :
IonizationSimulation
maxInterScanRetentionTimeDistance_ :
SuperHirnParameters
maxptmsize_ :
InspectInfile
maxTR_ :
SuperHirnParameters
me_ :
IsotopeWavelet
mean :
SignalToNoiseEstimator< Container >::GaussianEstimate
mean_ :
BasicStatistics< RealT >
,
IsotopeModel
,
LmaIsotopeFitter1D
,
LmaIsotopeModel
,
BackgroundIntensityBin
mean_residuals_ :
LinearRegression
measure_ :
IDMapper
measurement_start_ :
Spectrum2DCanvas
,
SpectrumCanvas
measurement_start_point_ :
Spectrum1DCanvas
medium_channel_arginine_label_ :
SILACLabeler
MEDIUM_CHANNEL_ID_ :
O18Labeler
medium_channel_label_ :
ICPLLabeler
medium_channel_lysine_label_ :
SILACLabeler
MEDIUM_FEATURE_MAPID_ :
ICPLLabeler
,
SILACLabeler
message_label_ :
IDEvaluationBase
,
TOPPASBase
,
TOPPViewBase
message_level :
LPWrapper::SolverParam
meta :
MzMLHandler< MapType >::BinaryData
meta_ :
MetaInfoInterface
meta_array_stats_ :
LayerStatisticsDialog
meta_id_descs_ :
MzDataHandler< MapType >
meta_indices_ :
DataFilters
meta_ms_experiment_ :
SpectrumAccessOpenMSCached
meta_name :
DataFilters::DataFilter
meta_stats_ :
LayerStatisticsDialog
metabo_iso_noisemodel_ :
FeatureFindingMetabo
metabuttons_ :
MetaInfoVisualizer
metadata_only_ :
FeatureFileOptions
,
PeakFileOptions
metainfodescription_name_ :
MetaInfoDescriptionVisualizer
metainfoptr_ :
MetaInfoVisualizer
metalabels_ :
MetaInfoVisualizer
metavalue_key_ :
HasMetaValue< MetaContainer >
method_ :
Normalizer
method_of_combination_ :
AcquisitionInfo
methods_ :
HasActivationMethod< SpectrumType >
min :
LayerStatisticsDialog::MetaStatsValue_
min_ :
AxisWidget
,
EmgModel
,
LmaIsotopeModel
,
InIntensityRange< PeakType >
,
DIntervalBase< D >
,
InRTRange< SpectrumType >
,
InMzRange< PeakType >
,
Histogram< ValueType, BinSizeType >
,
EGHModel
,
BiGaussModel
,
Fitter1D
,
GaussModel
,
LmaGaussModel
min_aa_weight_ :
CompNovoIdentificationBase
min_charge_ :
LayerStatisticsDialog
min_detect_ :
DetectabilitySimulation
min_element_ :
DistanceMatrix< Value >
min_elements_ :
LayerStatisticsDialog
min_energy_ :
IsInCollisionEnergyRange< SpectrumType >
min_float :
Param::ParamEntry
,
ParameterInformation
min_fwhm_ :
ElutionPeakDetection
min_int :
ParameterInformation
,
Param::ParamEntry
min_intensity_ :
LayerStatisticsDialog
min_isotope_fit_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
min_mz_ :
CompNovoIdentificationBase
min_pep_ids_ :
PrecursorIonSelection
min_precursor_intensity_ :
IsobaricChannelExtractor
min_precursor_purity_ :
IsobaricChannelExtractor
min_quality_ :
LayerStatisticsDialog
min_reporter_intensity_ :
IsobaricChannelExtractor
min_required_elements_ :
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
min_rt :
ConfidenceScoring
min_rt_span_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
min_run_occur_ :
MapAlignmentAlgorithmIdentification
min_sample_rate_ :
MassTraceDetection
min_score :
IDDecoyProbability::Transformation_
min_size_ :
IsInIsolationWindowSizeRange< SpectrumType >
min_spacing_ :
IsotopeWaveletTransform< PeakType >
min_spectra_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
min_trace_length_ :
MassTraceDetection
min_trace_score_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
minFeatureChrg_ :
SuperHirnParameters
minFeatureMZ_ :
SuperHirnParameters
minimal_mz_measurement_limit_ :
IonizationSimulation
MINIMAL_PEP_PROPHET_THERSHOLD :
LCMS
minimal_protein_list_accessions_ :
PSProteinInference
minIntensity_ :
SuperHirnParameters
minNbClusterMembers_ :
SuperHirnParameters
minor_version_ :
MascotXMLHandler
minTR_ :
SuperHirnParameters
mip_gap :
LPWrapper::SolverParam
mirror_mode_ :
Spectrum1DCanvas
mismatchscore_ :
MapAlignmentAlgorithmSpectrumAlignment
missed_cleavages :
SILACAnalyzer
,
ProteinIdentification::SearchParameters
missed_cleavages_ :
EnzymaticDigestion
,
PeptideEvidence
,
ProteinIdentificationVisualizer
,
MascotInfile
ml1_ :
AcqusHandler
ml1s_ :
TOFCalibration
ml2_ :
AcqusHandler
ml2s_ :
TOFCalibration
ml3_ :
AcqusHandler
ml3s_ :
TOFCalibration
mod :
MzTabUnitIdMetaData
mod_ :
ModificationDefinition
mod_combinations :
ModificationMassesResult
mod_def_set_ :
OMSSAXMLFile
,
XTandemXMLFile
mod_formula_idx :
ModificationMassesResult
MOD_LIST :
MS2Info
mod_masses :
ModificationMassesResult
mod_or_subst_identifier_ :
MzTabModification
mode_ :
HasScanMode< SpectrumType >
model2D_ :
ModelFitter< PeakType, FeatureType >
model_ :
Instrument
,
PSLPFormulation
,
SVMWrapper
,
TransformationDescription
,
InstrumentVisualizer
model_data_ :
EnzymaticDigestion
model_desc_ :
FeatureXMLFile
,
Feature
model_deviation :
SILACAnalyzer
model_deviation_ :
SILACFilter
model_type_ :
TransformationDescription
,
TransformationXMLFile
modifiable :
LayerData
modification_ :
Residue
,
UnimodXMLHandler
modification_names_ :
ModificationsDB
modification_output_method_ :
SuffixArrayPeptideFinder
modification_table_ :
ModifierRep
modificationAA_ :
ModificationVisualizer
,
TaggingVisualizer
modificationmass_ :
TaggingVisualizer
,
ModificationVisualizer
modificationname_ :
TaggingVisualizer
,
ModificationVisualizer
modifications :
Peptide
,
MzTabProteinSectionRow
,
MzTabPeptideSectionRow
,
LightPeptide
,
MzTabSmallMoleculeSectionRow
modifications_ :
UnimodXMLHandler
,
OMSSAXMLFile
,
XTandemInfile
modifications_per_peptide_ :
InspectInfile
modificationspecificity_ :
ModificationVisualizer
,
TaggingVisualizer
modified :
LayerData
modified_ :
ParamEditor
modified_peptides_ :
MascotXMLHandler
modified_residues_ :
ResidueDB
modify_strings_ :
SVOutStream
mods :
Peptide
mods_ :
ModificationsDB
,
MSQuantifications::Assay
,
MascotInfile
,
PepNovoInfile
mods_and_keys_ :
PepNovoInfile
mods_map_ :
OMSSAXMLFile
mods_to_num_ :
OMSSAXMLFile
module_ :
IntensityIterator< FeaFiModuleType >
,
IntensityLess< FeaFiModuleType >
,
MzIterator< FeaFiModuleType >
,
RtIterator< FeaFiModuleType >
mono_mass :
MS2Info
mono_mass_ :
UnimodXMLHandler
,
ResidueModification
mono_mass_delta :
Peptide::Modification
MONO_MZ :
SHFeature
,
MS2Info
MONO_MZ_END :
SHFeature
MONO_MZ_ORIGINAL :
SHFeature
MONO_MZ_START :
SHFeature
mono_weight_ :
Element
,
Residue
monoisotopic_mass_known_ :
LmaIsotopeFitter1D
monoisotopic_mz_ :
ExtendedIsotopeModel
,
ExtendedIsotopeFitter1D
,
LmaIsotopeModel
,
ModelFitter< PeakType, FeatureType >
,
LmaIsotopeFitter1D
,
IsotopeModel
mouse_move_begin_ :
Spectrum3DOpenGLCanvas
mouse_move_end_ :
Spectrum3DOpenGLCanvas
moving_annotations_ :
Spectrum1DCanvas
moving_splitter_ :
HistogramWidget
mp_ :
SvmTheoreticalSpectrumGenerator
mrmfeature_ :
MRMFeatureOpenMS
mrmscore_ :
MRMFeatureFinderScoring
ms1FeatureClustering_ :
SuperHirnParameters
ms1FeatureMergingTrTolerance_ :
SuperHirnParameters
ms1PeakAreaTrResolution_ :
SuperHirnParameters
ms1TRResolution_ :
SuperHirnParameters
MS2_MZ_TOLERANCE :
MS2ConsensusSpectrum
MS2_SCANS :
SHFeature
MS2_TYPE_TAG :
MS2Info
MS2FragmentPeaks :
MS2ConsensusSpectrum
MS2Scans :
ClusteredMS2ConsensusSpectrum
MS2TraceFeature :
SHFeature
ms_experiment_ :
SpectrumAccessOpenMS
ms_file_ :
MzTabSpectraRef
ms_file_format :
MzTabUnitIdMetaData
ms_file_id_format :
MzTabUnitIdMetaData
ms_file_location :
MzTabUnitIdMetaData
ms_level :
SpectrumMeta
ms_level_ :
MSSpectrum< PeakT >
ms_levels_ :
PeakFileOptions
,
MSExperiment< PeakT, ChromatogramPeakT >
msd_group :
ProteinResolver::ProteinEntry
,
ProteinResolver::PeptideEntry
msd_groups :
ProteinResolver::ISDGroup
msds :
ProteinResolver::ResolverResult
msq :
SILACAnalyzer
msq_ :
MzQuantMLHandler
mt_snr_filtering_ :
ElutionPeakDetection
mu_ :
PrecursorIonSelectionPreprocessing
multicharge_ :
InspectInfile
mw_ :
HistogramDialog
mz :
cudaHelp
MZ :
MSPeak
mz :
IsotopeWaveletTransform< PeakType >::BoxElement
,
SILACPoint
,
FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
mz_ :
MascotInfile
MZ_ :
InclusionExclusionList::IEWindow
mz_ :
Product
,
PrecursorVisualizer
,
PepXMLFile
mz_32_bit_ :
PeakFileOptions
mz_as_ppm_ :
InclusionExclusionList::WindowDistance_
MZ_begin :
IsotopeWaveletTransform< PeakType >::BoxElement
MZ_CLUSTER :
ProcessData
MZ_end :
IsotopeWaveletTransform< PeakType >::BoxElement
mz_error_mean_ :
RawMSSignalSimulation
mz_error_stddev_ :
RawMSSignalSimulation
mz_input_data_ :
ModelFitter< PeakType, FeatureType >
mz_label_ :
TOPPViewBase
mz_left_ :
InPrecursorMZRange< SpectrumType >
mz_max_ :
InclusionExclusionList::WindowDistance_
,
SpectraMerger::SpectraDistance_
mz_model :
Summary
mz_peptide_separations_ :
SILACFilter
mz_position :
PeakShape
mz_positions :
SILACPoint
mz_range_ :
PeakFileOptions
,
FeatureFileOptions
mz_right_ :
InPrecursorMZRange< SpectrumType >
mz_score :
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
mz_stat_ :
ModelFitter< PeakType, FeatureType >
mz_stdev :
Summary
mz_to_x_axis_ :
SpectrumCanvas
mz_tol_ :
PepXMLFile
mz_tolerance_ :
PrecursorIonSelection
,
IDMapper
mz_tolerance_unit_ :
PrecursorIonSelection
mzClusters :
MS1FeatureMerger
mzCoord_ :
BackgroundIntensityBin
mzIsotopesStDev_ :
ConsensusIsotopePattern
mzTolPpm_ :
SuperHirnParameters
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5