applyTransformation_(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map) | InternalCalibration | protected |
begin_ | ProgressLogger | mutableprotected |
calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses, String trafo_file_name="") | InternalCalibration | |
calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="") | InternalCalibration | |
calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, String trafo_file_name="") | InternalCalibration | |
calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="") | InternalCalibration | |
calibrateMapList(std::vector< MSExperiment< InputPeakType > > &exp_list, std::vector< MSExperiment< InputPeakType > > &calibrated_exp_list, std::vector< DoubleReal > &ref_masses, std::vector< DoubleReal > &detected_background_masses) | InternalCalibration | |
calibrateMapSpectrumwise(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses) | InternalCalibration | |
check_defaults_ | DefaultParamHandler | protected |
checkReferenceIds_(std::vector< PeptideIdentification > &pep_ids) | InternalCalibration | protected |
checkReferenceIds_(const FeatureMap<> &feature_map) | InternalCalibration | protected |
CMD enum value | ProgressLogger | |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
dlg_ | ProgressLogger | mutableprotected |
end_ | ProgressLogger | mutableprotected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
InternalCalibration() | InternalCalibration | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
makeLinearRegression_(std::vector< DoubleReal > &observed_masses, std::vector< DoubleReal > &theoretical_masses) | InternalCalibration | protected |
NONE enum value | ProgressLogger | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
ProgressLogger() | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
stop_watch_ | ProgressLogger | mutableprotected |
subsections_ | DefaultParamHandler | protected |
trafo_ | InternalCalibration | protected |
type_ | ProgressLogger | mutableprotected |
updateMembers_() | DefaultParamHandler | protectedvirtual |
value_ | ProgressLogger | mutableprotected |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~InternalCalibration() | InternalCalibration | inline |
~ProgressLogger() | ProgressLogger | |