Product meta information. More...
#include <OpenMS/METADATA/Product.h>
Public Member Functions | |
Product () | |
Constructor. More... | |
Product (const Product &source) | |
Copy constructor. More... | |
~Product () | |
Destructor. More... | |
Product & | operator= (const Product &source) |
Assignment operator. More... | |
bool | operator== (const Product &rhs) const |
Equality operator. More... | |
bool | operator!= (const Product &rhs) const |
Equality operator. More... | |
DoubleReal | getMZ () const |
returns the target m/z More... | |
void | setMZ (DoubleReal mz) |
sets the target m/z More... | |
DoubleReal | getIsolationWindowLowerOffset () const |
returns the lower offset from the target m/z More... | |
void | setIsolationWindowLowerOffset (DoubleReal bound) |
sets the lower offset from the target m/z More... | |
DoubleReal | getIsolationWindowUpperOffset () const |
returns the upper offset from the target m/z More... | |
void | setIsolationWindowUpperOffset (DoubleReal bound) |
sets the upper offset from the target m/z More... | |
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CVTermList () | |
Defaults constructor. More... | |
CVTermList (const CVTermList &rhs) | |
Copy constructor. More... | |
virtual | ~CVTermList () |
Destructor. More... | |
CVTermList & | operator= (const CVTermList &rhs) |
Assignment operator. More... | |
void | setCVTerms (const std::vector< CVTerm > &terms) |
sets the CV terms More... | |
void | replaceCVTerm (const CVTerm &cv_term) |
replaces the specified CV term More... | |
void | replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession) |
replaces the specified CV terms using the given accession number More... | |
void | replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map) |
replaces all cv terms with a map (can be obtained via getCVTerms) More... | |
const Map< String, std::vector < CVTerm > > & | getCVTerms () const |
returns the accession string of the term More... | |
void | addCVTerm (const CVTerm &term) |
adds a CV term More... | |
bool | operator== (const CVTermList &cv_term_list) const |
equality operator More... | |
bool | operator!= (const CVTermList &cv_term_list) const |
inequality operator More... | |
bool | hasCVTerm (const String &accession) const |
checks whether the term has a value More... | |
bool | empty () const |
return true if no terms are available More... | |
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MetaInfoInterface () | |
constructor More... | |
MetaInfoInterface (const MetaInfoInterface &rhs) | |
copy constructor More... | |
~MetaInfoInterface () | |
destructor More... | |
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
assignment operator More... | |
bool | operator== (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
bool | operator!= (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
const DataValue & | getMetaValue (const String &name) const |
returns the value corresponding to a string More... | |
const DataValue & | getMetaValue (UInt index) const |
returns the value corresponding to an index More... | |
bool | metaValueExists (const String &name) const |
returns if this MetaInfo is set More... | |
bool | metaValueExists (UInt index) const |
returns if this MetaInfo is set More... | |
void | setMetaValue (const String &name, const DataValue &value) |
sets the DataValue corresponding to a name More... | |
void | setMetaValue (UInt index, const DataValue &value) |
sets the DataValue corresponding to an index More... | |
void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
void | getKeys (std::vector< String > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
void | getKeys (std::vector< UInt > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
bool | isMetaEmpty () const |
returns if the MetaInfo is empty More... | |
void | clearMetaInfo () |
removes all meta values More... | |
Protected Attributes | |
DoubleReal | mz_ |
DoubleReal | window_low_ |
DoubleReal | window_up_ |
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Map< String, std::vector < CVTerm > > | cv_terms_ |
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MetaInfo * | meta_ |
pointer to the MetaInfo object. 0 by default More... | |
Additional Inherited Members | |
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static MetaInfoRegistry & | metaRegistry () |
retuns a reference to the MetaInfoRegistry More... | |
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void | createIfNotExists_ () |
creates the MetaInfo object if it does not exist More... | |
Product meta information.
This class describes the product isolation window for special scan types, such as MRM.
Product | ( | ) |
Constructor.
~Product | ( | ) |
Destructor.
DoubleReal getIsolationWindowLowerOffset | ( | ) | const |
returns the lower offset from the target m/z
Referenced by MzMLHandler< MapType >::writeProduct_().
DoubleReal getIsolationWindowUpperOffset | ( | ) | const |
returns the upper offset from the target m/z
Referenced by MzMLHandler< MapType >::writeProduct_().
DoubleReal getMZ | ( | ) | const |
returns the target m/z
Referenced by MSChromatogram< ChromatogramPeakType >::getMZ(), and MzMLHandler< MapType >::writeProduct_().
bool operator!= | ( | const Product & | rhs | ) | const |
Equality operator.
bool operator== | ( | const Product & | rhs | ) | const |
Equality operator.
void setIsolationWindowLowerOffset | ( | DoubleReal | bound | ) |
sets the lower offset from the target m/z
void setIsolationWindowUpperOffset | ( | DoubleReal | bound | ) |
sets the upper offset from the target m/z
void setMZ | ( | DoubleReal | mz | ) |
sets the target m/z
Referenced by ChromatogramTools::convertSpectraToChromatograms(), and ChromatogramExtractor::prepareSpectra_().
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OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5 |