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OpenMS
FeatureMap
FeatureMap< FeatureT > Member List
This is the complete list of members for
FeatureMap< FeatureT >
, including all inherited members.
applyMemberFunction
(Size(Type::*member_function)())
FeatureMap< FeatureT >
inline
applyMemberFunction
(Size(Type::*member_function)() const) const
FeatureMap< FeatureT >
inline
Base
typedef
FeatureMap< FeatureT >
clear
(bool clear_meta_data=true)
FeatureMap< FeatureT >
inline
clearRanges
()
RangeManager< 2 >
inline
clearUniqueId
()
UniqueIdInterface
inline
ConstIterator
typedef
FeatureMap< FeatureT >
ConstReference
typedef
FeatureMap< FeatureT >
ConstReverseIterator
typedef
FeatureMap< FeatureT >
data_processing_
FeatureMap< FeatureT >
protected
DIMENSION
enum value
RangeManager< 2 >
DocumentIdentifier
()
DocumentIdentifier
DocumentIdentifier
(const DocumentIdentifier &source)
DocumentIdentifier
elements
(defined in
vector< T >
)
vector< T >
private
ensureUniqueId
()
UniqueIdInterface
inline
FeatureMap
()
FeatureMap< FeatureT >
inline
FeatureMap
(const FeatureMap &source)
FeatureMap< FeatureT >
inline
FeatureType
typedef
FeatureMap< FeatureT >
file_path_
DocumentIdentifier
protected
file_type_
DocumentIdentifier
protected
getAnnotationStatistics
() const
FeatureMap< FeatureT >
inline
getBase_
() const
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
protected
getBase_
()
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
protected
getDataProcessing
() const
FeatureMap< FeatureT >
inline
getDataProcessing
()
FeatureMap< FeatureT >
inline
getIdentifier
() const
DocumentIdentifier
getLoadedFilePath
() const
DocumentIdentifier
getLoadedFileType
() const
DocumentIdentifier
getMax
() const
RangeManager< 2 >
inline
getMaxInt
() const
RangeManager< 2 >
inline
getMin
() const
RangeManager< 2 >
inline
getMinInt
() const
RangeManager< 2 >
inline
getProteinIdentifications
() const
FeatureMap< FeatureT >
inline
getProteinIdentifications
()
FeatureMap< FeatureT >
inline
getUnassignedPeptideIdentifications
() const
FeatureMap< FeatureT >
inline
getUnassignedPeptideIdentifications
()
FeatureMap< FeatureT >
inline
getUniqueId
() const
UniqueIdInterface
inline
hasInvalidUniqueId
() const
UniqueIdInterface
inline
hasValidUniqueId
() const
UniqueIdInterface
inline
id_
DocumentIdentifier
protected
int_range_
RangeManager< 2 >
protected
IntensityRangeType
typedef
RangeManager< 2 >
INVALID
enum value
UniqueIdInterface
isValid
(UInt64 unique_id)
UniqueIdInterface
inline
static
Iterator
typedef
FeatureMap< FeatureT >
operator!=
(const FeatureMap &rhs) const
FeatureMap< FeatureT >
inline
RangeManager< 2 >::operator!=
(const RangeManager &rhs) const
RangeManager< 2 >
inline
operator+
(const FeatureMap &rhs) const
FeatureMap< FeatureT >
inline
operator+=
(const FeatureMap &rhs)
FeatureMap< FeatureT >
inline
operator=
(const FeatureMap &rhs)
FeatureMap< FeatureT >
inline
RangeManager< 2 >::operator=
(const RangeManager &rhs)
RangeManager< 2 >
inline
OpenMS::DocumentIdentifier::operator=
(const DocumentIdentifier &source)
DocumentIdentifier
OpenMS::UniqueIdInterface::operator=
(UniqueIdInterface const &rhs)
UniqueIdInterface
inline
operator==
(const FeatureMap &rhs) const
FeatureMap< FeatureT >
inline
RangeManager< 2 >::operator==
(const RangeManager &rhs) const
RangeManager< 2 >
inline
OpenMS::DocumentIdentifier::operator==
(const DocumentIdentifier &rhs) const
DocumentIdentifier
OpenMS::UniqueIdInterface::operator==
(UniqueIdInterface const &rhs) const
UniqueIdInterface
inline
pos_range_
RangeManager< 2 >
protected
PositionRangeType
typedef
RangeManager< 2 >
PositionType
typedef
RangeManager< 2 >
privvec
typedef
FeatureMap< FeatureT >
protein_identifications_
FeatureMap< FeatureT >
protected
RangeManager
()
RangeManager< 2 >
inline
RangeManager
(const RangeManager &rhs)
RangeManager< 2 >
inline
RangeManagerType
typedef
FeatureMap< FeatureT >
Reference
typedef
FeatureMap< FeatureT >
resolveUniqueIdConflicts
()
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
ReverseIterator
typedef
FeatureMap< FeatureT >
setDataProcessing
(const std::vector< DataProcessing > &processing_method)
FeatureMap< FeatureT >
inline
setIdentifier
(const String &id)
DocumentIdentifier
setLoadedFilePath
(const String &file_name)
DocumentIdentifier
setLoadedFileType
(const String &file_name)
DocumentIdentifier
setProteinIdentifications
(const std::vector< ProteinIdentification > &protein_identifications)
FeatureMap< FeatureT >
inline
setUnassignedPeptideIdentifications
(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)
FeatureMap< FeatureT >
inline
setUniqueId
()
UniqueIdInterface
inline
setUniqueId
(UInt64 rhs)
UniqueIdInterface
inline
setUniqueId
(const String &rhs)
UniqueIdInterface
sortByIntensity
(bool reverse=false)
FeatureMap< FeatureT >
inline
sortByMZ
()
FeatureMap< FeatureT >
inline
sortByOverallQuality
(bool reverse=false)
FeatureMap< FeatureT >
inline
sortByPosition
()
FeatureMap< FeatureT >
inline
sortByRT
()
FeatureMap< FeatureT >
inline
swap
(FeatureMap &from)
FeatureMap< FeatureT >
inline
OpenMS::DocumentIdentifier::swap
(DocumentIdentifier &from)
DocumentIdentifier
OpenMS::UniqueIdInterface::swap
(UniqueIdInterface &from)
UniqueIdInterface
inline
UniqueIdIndexer< FeatureMap< FeatureT > >::swap
(UniqueIdIndexer &rhs)
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
swapFeaturesOnly
(FeatureMap &from)
FeatureMap< FeatureT >
inline
unassigned_peptide_identifications_
FeatureMap< FeatureT >
protected
unique_id_
UniqueIdInterface
protected
uniqueid_to_index_
UniqueIdIndexer< FeatureMap< FeatureT > >
mutable
protected
UniqueIdInterface
()
UniqueIdInterface
inline
UniqueIdInterface
(const UniqueIdInterface &rhs)
UniqueIdInterface
inline
UniqueIdMap
typedef
UniqueIdIndexer< FeatureMap< FeatureT > >
uniqueIdToIndex
(UInt64 unique_id) const
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
updateRanges
()
FeatureMap< FeatureT >
inline
virtual
updateRanges_
(const PeakIteratorType &begin, const PeakIteratorType &end)
RangeManager< 2 >
inline
protected
updateUniqueIdToIndex
() const
UniqueIdIndexer< FeatureMap< FeatureT > >
inline
~DocumentIdentifier
()
DocumentIdentifier
virtual
~FeatureMap
()
FeatureMap< FeatureT >
inline
virtual
~RangeManager
()
RangeManager< 2 >
inline
virtual
~UniqueIdInterface
()
UniqueIdInterface
inline
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:19:32 using doxygen 1.8.5