#include <OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h>
Classes | |
struct | Modification |
Public Member Functions | |
Peptide () | |
Peptide (const Peptide &rhs) | |
Peptide & | operator= (const Peptide &rhs) |
bool | operator== (const Peptide &rhs) const |
void | setChargeState (int charge) |
int | getChargeState () const |
void | setPeptideGroupLabel (const String &label) |
String | getPeptideGroupLabel () const |
double | getRetentionTime () const |
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CVTermList () | |
Defaults constructor. More... | |
CVTermList (const CVTermList &rhs) | |
Copy constructor. More... | |
virtual | ~CVTermList () |
Destructor. More... | |
CVTermList & | operator= (const CVTermList &rhs) |
Assignment operator. More... | |
void | setCVTerms (const std::vector< CVTerm > &terms) |
sets the CV terms More... | |
void | replaceCVTerm (const CVTerm &cv_term) |
replaces the specified CV term More... | |
void | replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession) |
replaces the specified CV terms using the given accession number More... | |
void | replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map) |
replaces all cv terms with a map (can be obtained via getCVTerms) More... | |
const Map< String, std::vector < CVTerm > > & | getCVTerms () const |
returns the accession string of the term More... | |
void | addCVTerm (const CVTerm &term) |
adds a CV term More... | |
bool | operator== (const CVTermList &cv_term_list) const |
equality operator More... | |
bool | operator!= (const CVTermList &cv_term_list) const |
inequality operator More... | |
bool | hasCVTerm (const String &accession) const |
checks whether the term has a value More... | |
bool | empty () const |
return true if no terms are available More... | |
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MetaInfoInterface () | |
constructor More... | |
MetaInfoInterface (const MetaInfoInterface &rhs) | |
copy constructor More... | |
~MetaInfoInterface () | |
destructor More... | |
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
assignment operator More... | |
bool | operator== (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
bool | operator!= (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
const DataValue & | getMetaValue (const String &name) const |
returns the value corresponding to a string More... | |
const DataValue & | getMetaValue (UInt index) const |
returns the value corresponding to an index More... | |
bool | metaValueExists (const String &name) const |
returns if this MetaInfo is set More... | |
bool | metaValueExists (UInt index) const |
returns if this MetaInfo is set More... | |
void | setMetaValue (const String &name, const DataValue &value) |
sets the DataValue corresponding to a name More... | |
void | setMetaValue (UInt index, const DataValue &value) |
sets the DataValue corresponding to an index More... | |
void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
void | getKeys (std::vector< String > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
void | getKeys (std::vector< UInt > &keys) const |
fills the given vector with a list of all keys for which a value is set More... | |
bool | isMetaEmpty () const |
returns if the MetaInfo is empty More... | |
void | clearMetaInfo () |
removes all meta values More... | |
Public Attributes | |
std::vector< RetentionTime > | rts |
String | id |
std::vector< String > | protein_refs |
CVTermList | evidence |
String | sequence |
std::vector< Modification > | mods |
Protected Attributes | |
int | charge_ |
Int | peptide_group_label_ |
std::vector< String > * | peptide_group_labels_ |
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Map< String, std::vector < CVTerm > > | cv_terms_ |
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MetaInfo * | meta_ |
pointer to the MetaInfo object. 0 by default More... | |
Additional Inherited Members | |
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static MetaInfoRegistry & | metaRegistry () |
retuns a reference to the MetaInfoRegistry More... | |
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void | createIfNotExists_ () |
creates the MetaInfo object if it does not exist More... | |
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Referenced by Peptide::operator=(), and Peptide::operator==().
CVTermList evidence |
Referenced by Peptide::operator=(), and Peptide::operator==().
String id |
std::vector<Modification> mods |
Referenced by Peptide::operator=(), and Peptide::operator==().
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protected |
Referenced by Peptide::operator=(), and Peptide::operator==().
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protected |
Referenced by Peptide::operator=(), and Peptide::operator==().
std::vector<String> protein_refs |
Referenced by Peptide::operator=(), and Peptide::operator==().
std::vector<RetentionTime> rts |
Referenced by ChromatogramExtractor::extractChromatograms(), Peptide::operator=(), and Peptide::operator==().
String sequence |
Referenced by Peptide::operator=(), Peptide::operator==(), and ChromatogramExtractor::prepareSpectra_().
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:38 using doxygen 1.8.5 |