add_modification_(std::vector< TargetedExperiment::Peptide::Modification > &mods, int location, ResidueModification &rmod, const String &name) | TransitionTSVReader | private |
begin_ | ProgressLogger | mutableprotected |
cleanUpTransition(TSVTransition &mytransition) | TransitionTSVReader | private |
CMD enum value | ProgressLogger | |
convertTargetedExperimentToTSV(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
convertTSVToTargetedExperiment(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
createPeptide_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Peptide &peptide) | TransitionTSVReader | private |
createProtein_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::TargetedExperiment::Protein &protein) | TransitionTSVReader | private |
createTransition_(std::vector< TSVTransition >::iterator &tr_it, OpenMS::ReactionMonitoringTransition &rm_trans) | TransitionTSVReader | private |
dlg_ | ProgressLogger | mutableprotected |
end_ | ProgressLogger | mutableprotected |
endProgress() const | ProgressLogger | |
getLogType() const | ProgressLogger | |
getTSVHeader(std::string &line, char &delimiter, std::vector< std::string > header, std::map< std::string, int > &header_dict) | TransitionTSVReader | private |
GUI enum value | ProgressLogger | |
header_names | TransitionTSVReader | privatestatic |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
NONE enum value | ProgressLogger | |
PeptideVectorType typedef | TransitionTSVReader | private |
ProgressLogger() | ProgressLogger | |
ProteinVectorType typedef | TransitionTSVReader | private |
readTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private |
readUnstructuredTSVInput_(const char *filename, std::vector< TSVTransition > &transition_list) | TransitionTSVReader | private |
recursion_depth_ | ProgressLogger | protectedstatic |
setLogType(LogType type) const | ProgressLogger | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
stop_watch_ | ProgressLogger | mutableprotected |
strarray | TransitionTSVReader | privatestatic |
TransitionVectorType typedef | TransitionTSVReader | private |
TSVToTargetedExperiment_(std::vector< TSVTransition > &transition_list, OpenMS::TargetedExperiment &exp) | TransitionTSVReader | private |
type_ | ProgressLogger | mutableprotected |
validateTargetedExperiment(OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | |
value_ | ProgressLogger | mutableprotected |
writeTSVOutput_(const char *filename, OpenMS::TargetedExperiment &targeted_exp) | TransitionTSVReader | private |
~ProgressLogger() | ProgressLogger | |