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OpenSwathHelper Class Reference

A helper class that is used by several OpenSWATH tools. More...

#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h>

Static Public Member Functions

static void selectSwathTransitions (const OpenMS::TargetedExperiment &targeted_exp, OpenMS::TargetedExperiment &transition_exp_used, double min_upper_edge_dist, double lower, double upper)
 Select transitions between lower and upper and write them into the new TargetedExperiment. More...
 
static void checkSwathMap (const OpenMS::MSExperiment< Peak1D > &swath_map, double &lower, double &upper)
 Get the lower / upper offset for this SWATH map and do some sanity checks. More...
 
static void selectSwathTransitions (const OpenSwath::LightTargetedExperiment &targeted_exp, OpenSwath::LightTargetedExperiment &transition_exp_used, double min_upper_edge_dist, double lower, double upper)
 Select transitions between lower and upper and write them into the new TargetedExperiment. More...
 
template<class TargetedExperimentT >
static bool checkSwathMapAndSelectTransitions (const OpenMS::MSExperiment< Peak1D > &exp, const TargetedExperimentT &targeted_exp, TargetedExperimentT &transition_exp_used, double min_upper_edge_dist)
 

Detailed Description

A helper class that is used by several OpenSWATH tools.

Member Function Documentation

static void checkSwathMap ( const OpenMS::MSExperiment< Peak1D > &  swath_map,
double lower,
double upper 
)
static

Get the lower / upper offset for this SWATH map and do some sanity checks.

Referenced by OpenSwathHelper::checkSwathMapAndSelectTransitions().

static bool checkSwathMapAndSelectTransitions ( const OpenMS::MSExperiment< Peak1D > &  exp,
const TargetedExperimentT &  targeted_exp,
TargetedExperimentT &  transition_exp_used,
double  min_upper_edge_dist 
)
inlinestatic
static void selectSwathTransitions ( const OpenMS::TargetedExperiment targeted_exp,
OpenMS::TargetedExperiment transition_exp_used,
double  min_upper_edge_dist,
double  lower,
double  upper 
)
static

Select transitions between lower and upper and write them into the new TargetedExperiment.

Referenced by OpenSwathHelper::checkSwathMapAndSelectTransitions().

static void selectSwathTransitions ( const OpenSwath::LightTargetedExperiment targeted_exp,
OpenSwath::LightTargetedExperiment transition_exp_used,
double  min_upper_edge_dist,
double  lower,
double  upper 
)
static

Select transitions between lower and upper and write them into the new TargetedExperiment.


OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5