Here is a list of all class members with links to the classes they belong to:
- c -
- c
: FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
, IsotopeWaveletTransform< PeakType >::BoxElement
- C
: ExtendedIsotopeModel
, IsotopeModel
, SVMWrapper
, LmaIsotopeFitter1D
, LmaIsotopeModel
- c0
: PeakWidthEstimator::Result
- c1
: PeakWidthEstimator::Result
- c13MassError_
: DeconvPeak
- c1_
: MapAlignmentAlgorithmSpectrumAlignment
, BernNorm
- c2_
: BernNorm
- c_
: mean_and_stddev
, TOFCalibration
- C_ELEMENTS
: LayerData
- c_mzs_
: IsotopeWaveletTransform< PeakType >
- c_sorted_candidate_
: IsotopeWaveletTransform< PeakType >
- c_spacings_
: IsotopeWaveletTransform< PeakType >
- c_strings_
: StringManager
- C_TERM
: ResidueModification
- c_term_mod_
: AASequence
- cache_
: SpectrumAccessOpenMSCached
- CachedmzML()
: CachedmzML
- CAD
: IonSource
- calc_correct_
: PosteriorErrorProbabilityModel
- calc_incorrect_
: PosteriorErrorProbabilityModel
- calcCentroids()
: CentroidData
- calcChargeStateIntensities_()
: ProtonDistributionModel
- calcElutionFitScore()
: EmgScoring
- calcGridLines()
: AxisTickCalculator
- calcLibraryScore()
: MRMScoring
- calcLogGridLines()
: AxisTickCalculator
- calcRTScore()
: MRMScoring
- calcSNScore()
: MRMScoring
- calculate_lda_prescore()
: OpenSwath_Scores
- calculate_swath_lda_prescore()
: OpenSwath_Scores
- calculateAddInfo_()
: PeakIntensityPredictor
- calculateAvgWeight_()
: ElementDB
- calculateBackwardPart_()
: HiddenMarkovModel
- calculateBgEstimation_()
: MRMTransitionGroupPicker
- calculateCalibCoeffs_()
: TOFCalibration
- calculated_mass_to_charge_
: IdentificationHit
- calculateEmissionProbabilities()
: HiddenMarkovModel
- calculateFDRs_()
: FalseDiscoveryRate
- calculateForwardPart_()
: HiddenMarkovModel
- calculateGaussTable()
: SVMWrapper
- calculateGB()
: AAIndex
- calculateGridLines_()
: Spectrum3DOpenGLCanvas
- calculateLabelsAndMassShifts()
: SILACAnalyzer
- calculateMonoWeight_()
: ElementDB
- calculateMT_()
: RTSimulation
- calculateProteinProbabilities()
: PSProteinInference
- calculateProtonDistribution_()
: ProtonDistributionModel
- calculateProtonDistributionCharge1_()
: ProtonDistributionModel
- calculateProtonDistributionCharge2_()
: ProtonDistributionModel
- calculateProtonDistributionGreater2_()
: ProtonDistributionModel
- calculateProtonDistributionIonPair_()
: ProtonDistributionModel
- calculateSwathScores_()
: MRMFeatureFinderScoring
- calculateXICs_()
: OfflinePrecursorIonSelection
, PSLPFormulation
- calcXcorrCoelutionScore()
: MRMScoring
- calcXcorrCoelutionScore_weighted()
: MRMScoring
- calcXcorrShape_score()
: MRMScoring
- calcXcorrShape_score_weighted()
: MRMScoring
- calib_masses_
: TOFCalibration
- calib_peaks_ft_
: TOFCalibration
- calibrate()
: TOFCalibration
- calibrateMapGlobally()
: InternalCalibration
- calibrateMapList()
: InternalCalibration
- calibrateMapSpectrumwise()
: InternalCalibration
- CALIBRATION
: DataProcessing
- CancelButton_
: ListEditor
- cancelbutton_
: MetaDataBrowser
- canModificationBeApplied_()
: SILACLabeler
- CANNOT_WRITE_OUTPUT_FILE
: TOPPBase
- canvas()
: Spectrum1DWidget
, Spectrum2DWidget
, Spectrum3DWidget
, SpectrumWidget
- canvas_
: LayerStatisticsDialog
, SpectrumWidget
- canvas_3d_
: Spectrum3DOpenGLCanvas
- capacity()
: ConstRefVector< ContainerT >
- capacity_
: ConstRefVector< ContainerT >
- CAPTION_3D_SUFFIX_
: TOPPViewBase
- category
: ToolDescriptionInternal
, ToolExternalDetails
- CE
: TransitionTSVReader::TSVTransition
- CEI
: IonSource
- cell_dimension
: HashGrid< Cluster >
- cell_it_
: HashGrid< Cluster >::Iterator
, HashGrid< Cluster >::ConstIterator
- cell_iterator
: HashGrid< Cluster >::Iterator
, HashGrid< Cluster >::ConstIterator
, HashGrid< Cluster >
- cell_type
: MzTabSubIdMetaData
- cellClicked_()
: SpectraIdentificationViewWidget
- CellContent
: HashGrid< Cluster >
- CellIndex
: HashGrid< Cluster >
- cellindexAtClustercenter_()
: HashGrid< Cluster >
- cells_
: HashGrid< Cluster >
- center
: IsobaricQuantitationMethod::IsobaricChannelInformation
, ItraqConstants::ChannelInfo
, HierarchicalClustering< PointRef >::TreeNode
, DIntervalBase< D >
- center_point_
: QTCluster
- centerOfBin()
: Histogram< ValueType, BinSizeType >
- centroid_mz_
: MassTrace
- centroid_position
: PeakPickerCWT::PeakArea_
- centroid_rt_
: MassTrace
- centroid_sd_
: MassTrace
- CentroidData()
: CentroidData
- centroidDataModus()
: SuperHirnParameters
- centroidDataModus_
: CentroidData
, SuperHirnParameters
- CentroidPeak()
: CentroidPeak
- centroidWindowWidth_
: SuperHirnParameters
- cexp_
: MzDataHandler< MapType >
, MzMLHandler< MapType >
, MzXMLHandler< MapType >
, TraMLHandler
- cf_cf_obj_
: MzQuantMLHandler
- changed_
: QTCluster
, TOPPASScene
- changedParameter()
: TOPPASScene
- changeElutionTimesByFactor()
: FeatureLCProfile
- changeLabel()
: TOPPViewBase
- changeLayerFilterState()
: SpectrumCanvas
- changeLayerFlag()
: TOPPViewBase
- changeLegendVisibility()
: SpectrumCanvas
, SpectrumWidget
- changeUnassigned()
: TOPPViewBase
- changeVisibility()
: SpectrumCanvas
- changeVisibleArea_()
: Spectrum1DCanvas
, SpectrumCanvas
- channel_count
: IsobaricQuantifierStatistics
, ItraqQuantifier::ItraqQuantifierStats
- CHANNEL_COUNT
: ItraqConstants
- channel_description_
: BaseLabeler
- channel_map_
: ItraqChannelExtractor
, ItraqQuantifier
, ITRAQLabeler
- CHANNELELECTRONMULTIPLIER
: IonDetector
- ChannelInfo
: ItraqQuantifier
, ITRAQLabeler
- ChannelMapType
: ItraqChannelExtractor
, ItraqConstants
, ItraqQuantifier
, ITRAQLabeler
- channels_
: ItraqEightPlexQuantitationMethod
, ItraqFourPlexQuantitationMethod
, TMTSixPlexQuantitationMethod
- CHANNELS_EIGHTPLEX
: ItraqConstants
- CHANNELS_FOURPLEX
: ItraqConstants
- CHANNELS_TMT_SIXPLEX
: ItraqConstants
- CHANNELTRON
: IonDetector
- char_rest_
: MzXMLHandler< MapType >
- character_buffer_
: MascotXMLHandler
- characters()
: ConsensusXMLFile
, CVMappingFile
, FeatureXMLFile
, MascotXMLHandler
, MzDataHandler< MapType >
, MzIdentMLHandler
, MzMLHandler< MapType >
, MzQuantMLHandler
, MzXMLHandler< MapType >
, PTMXMLHandler
, ToolDescriptionHandler
, TraMLHandler
, UnimodXMLHandler
, XMLHandler
, XTandemInfileXMLHandler
, OMSSAXMLFile
, QcMLFile
, SemanticValidator
, XTandemXMLFile
- CHARGE
: DataFilters
- charge
: PILISCrossValidation::Peptide
, LightTransition
, LightPeptide
, Peptide
, SvmTheoreticalSpectrumGenerator::IonType
, IsotopeCluster::ChargedIndexSet
, SILACFiltering::BlacklistEntry
, SILACPoint
, MzTabPeptideSectionRow
, MzTabSmallMoleculeSectionRow
, Summary
, MS1Signal
, OptimizePeakDeconvolution::Data
, RNPxlReportRow
- charge_
: AccurateMassSearchResult
, Peptide
, TraMLProduct
, EmpiricalFormula
, Adduct
, FeatureHypothesis
, SILACFilter
, PepXMLFile
, BaseFeature
, FeatureHandle
, IdentificationHit
, PeptideHit
, Precursor
, ExtendedIsotopeFitter1D
, ExtendedIsotopeModel
, IsotopeFitter1D
, IsotopeModel
, LmaIsotopeFitter1D
, LmaIsotopeModel
, DeconvPeak
, OptimizePeakDeconvolution
, PrecursorVisualizer
- CHARGE_CALCULATION
: DataProcessing
- CHARGE_DECONVOLUTION
: DataProcessing
- charge_lower_bound_
: FeatureFindingMetabo
- charge_max
: SILACAnalyzer
- charge_min
: SILACAnalyzer
- charge_state
: SHFeature
- charge_upper_bound_
: FeatureFindingMetabo
- ChargedIndexSet
: FeatureFinderDefs
, Fitter1D
, IsotopeCluster::ChargedIndexSet
- ChargeDirected
: ProtonDistributionModel
- CHARGEMODE
: FeatureDeconvolution
- ChargePair()
: ChargePair
- ChargeRemote
: ProtonDistributionModel
- charges
: ProteinIdentification::SearchParameters
- charges_
: MascotInfile
, HasPrecursorCharge< SpectrumType >
, ProteinIdentificationVisualizer
- chargeTestworthy_()
: FeatureDeconvolution
- ChargeType
: BaseFeature
, FeatureHandle
, ModelFitter< PeakType, FeatureType >
- chauvenet()
: MRMRTNormalizer
- chauvenet_probability()
: MRMRTNormalizer
- check_()
: DataFilterDialog
- check_AC()
: SHFeature
- check_defaults_
: DefaultParamHandler
- check_elution_peak()
: ProcessData
- check_elution_peak_belong()
: ProcessData
- check_feature_list_empty()
: LCMS
- check_LCMS_name()
: LCMS
- check_match_by_id()
: SHFeature
- check_MODIFICATION()
: MS2Info
- check_MS2_empty()
: SHFeature
- check_MZ_occurence()
: ProcessData
- check_PPMs_
: FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
- check_raw_spec_name_empty()
: LCMS
- check_term_value_types_
: SemanticValidator
- check_units_
: SemanticValidator
- checkBelonging()
: BackgroundIntensityBin
- checkCompliance()
: BinnedSpectrum
- checkDBVersion()
: DBAdapter
- checkDefaults()
: Param
- checked_base_name_
: PepXMLFile
- checkedToDouble_()
: EDTAFile
- checkedToInt_()
: EDTAFile
- checkFeatureQuality_()
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- checkFormula_()
: Adduct
- checkForRequiredUserParams_()
: PrecursorIonSelection
- checkFWHM_()
: OptimizePeakDeconvolution
- checkHits_()
: IDMapper
- checkIds_()
: BaseGroupFinder
- checkIfFeatureExtractionExists()
: FTPeakDetectController
- checkIfIniParametersAreApplicable_()
: TOPPBase
- checkIfWeAreDone()
: TOPPASScene
- checkIsotopeBelongingAndAdjustMass()
: MSPeak
- checkMassRanges_()
: OfflinePrecursorIonSelection
- checkMassType_()
: IDMapper
- checkMaximalRTSpan()
: EGHTraceFitter< PeakType >
, GaussTraceFitter< PeakType >
, TraceFitter< PeakType >
- checkMinimalRTSpan()
: EGHTraceFitter< PeakType >
, GaussTraceFitter< PeakType >
, TraceFitter< PeakType >
- checkName_()
: ControlledVocabulary
- checkNeighbour_()
: SimpleExtender< PeakType, FeatureType >
- checkParam_()
: TOPPBase
- checkParameters_()
: MapAlignmentAlgorithmIdentification
- checkPositionForPlausibility_()
: IsotopeWaveletTransform< PeakType >
- checkPPMTheoModel_()
: IsotopeWaveletTransform< PeakType >
- checkPreferences_()
: TOPPViewBase
- checkReferenceIds_()
: InternalCalibration
- checkSize()
: SaveImageDialog
- checkSolution_()
: FeatureDeconvolution
- checksum_
: SourceFile
, SourceFileVisualizer
- checksum_type_
: SourceFile
, SourceFileVisualizer
- ChecksumType
: SourceFile
- checkSwathMap()
: OpenSwathHelper
- checkSwathMapAndSelectTransitions()
: OpenSwathHelper
- checkValidity_()
: TOPPASInputFileDialog
, TOPPASIOMappingDialog
, TOPPASOutputFilesDialog
- CHEMI
: IonSource
- CHEMICAL_DERIVATIVE
: ResidueModification
- chemical_formula
: MzTabSmallMoleculeSectionRow
- chi_squared_
: LinearRegression
- CHILD
: CompNovoIonScoringBase
- children
: ControlledVocabulary::CVTerm
- childScan
: MSPeak
- chooseDecoys_()
: ConfidenceScoring
- chooseElutionProfile_()
: RawMSSignalSimulation
- chooseTraceFitter_()
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- chop()
: String
- CHRG
: MS2Info
, MSPeak
- CHRG_MAP
: LCElutionPeak
- chrom_fwhm_
: ElutionPeakDetection
, FeatureFindingMetabo
- chrom_index_
: CachedmzML
- chrom_peak_snr_
: ElutionPeakDetection
, MassTraceDetection
- Chromatogram()
: Chromatogram
- chromatogram_
: SignalToNoiseOpenMS< PeakT >
, MzMLHandler< MapType >
- chromatogram_flag_set()
: LayerData
- chromatogram_map_
: MRMTransitionGroup< SpectrumType, TransitionType >
- ChromatogramExtractor()
: ChromatogramExtractor
- ChromatogramMeta()
: ChromatogramMeta
- ChromatogramNames
: ChromatogramSettings
- ChromatogramPeak()
: ChromatogramPeak
- ChromatogramPeakType
: MzMLHandler< MapType >
, MSExperiment< PeakT, ChromatogramPeakT >
- chromatograms
: LayerData
- chromatograms_
: MRMTransitionGroup< SpectrumType, TransitionType >
, MSExperiment< PeakT, ChromatogramPeakT >
- ChromatogramSettings()
: ChromatogramSettings
- ChromatogramTools()
: ChromatogramTools
- ChromatogramType
: ChromatogramSettings
, CachedmzML
, MzMLHandler< MapType >
, MSExperiment< PeakT, ChromatogramPeakT >
- CHROMATOGRAPHY
: IonSource
- CHYMOTRYPSIN
: ProteinIdentification
- CI
: IonSource
- CID
: IonSource
, Precursor
- cid_
: MzIdentMLHandler
- CIon
: Residue
- CIonMinusOne
: Residue
- CIonPlusOne
: Residue
- CIonPlusTwo
: Residue
- class_models
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- classification_
: ResidueModification
- classifyIsotopes_()
: CompNovoIonScoringBase
- clean_all_charge_states_
: ParentPeakMower
- cleanDeconvPeaks()
: Deisotoper
- cleanUpTransition()
: TransitionTSVReader
- clear()
: HiddenMarkovModel
, TargetedExperiment
, IsotopeDistribution
, IMSAlphabet
, HashGrid< Cluster >
, ConstRefVector< ContainerT >
, ConvexHull2D
, Date
, DateTime
, DIntervalBase< D >
, DistanceMatrix< Value >
, DPosition< D, TCoordinateType >
, Matrix< Value >
, Param
, SparseVector< Value >
, DataFilters
, StringManager
, ConsensusFeature
, ConsensusMap
, FeatureMap< FeatureT >
, MSChromatogram< PeakT >
, MSExperiment< PeakT, ChromatogramPeakT >
, MSSpectrum< PeakT >
, PeakIndex
, AveragePosition< D >
, BasicStatistics< RealT >
, MetaInfo
, StopWatch
, ParamEditor
, TOPPASResources
- clear_()
: ElementDB
, ResidueDB
, DataValue
, MetaInfoVisualizer
- clear_feature_list()
: LCMS
- clearbutton_
: MetaInfoVisualizer
- clearCache()
: LogStreamBuf
- clearChildIds_()
: BinnedSpectrum
, PersistentObject
, MSChromatogram< PeakT >
, MSExperiment< PeakT, ChromatogramPeakT >
, MSSpectrum< PeakT >
- clearEluents()
: Gradient
- clearId()
: PersistentObject
- clearInitialTransitionProbabilities()
: HiddenMarkovModel
- clearMetaDataArrays()
: MSExperiment< PeakT, ChromatogramPeakT >
- clearMetaInfo()
: MetaInfoInterface
- clearMSLevels()
: PeakFileOptions
- clearPercentages()
: Gradient
- clearRanges()
: RangeManager< D >
- clearResidues_()
: ResidueDB
- clearResult()
: ProteinResolver
- clearTags()
: Param
- clearTimepoints()
: Gradient
- clearTrainingEmissionProbabilities()
: HiddenMarkovModel
- clearUniqueId()
: UniqueIdInterface
- cleavage_
: MascotInfile
- cleavage_site_
: XTandemInfile
- CleavageModel()
: EnzymaticDigestion::CleavageModel
- clicked()
: TOPPASVertex
- clipboard_
: TOPPASScene
- clipboard_scene_
: TOPPASBase
- clone()
: Digestion
, Modification
, SampleTreatment
, Tagging
- close()
: Bzip2Ifstream
, GzipIfstream
- closebutton_
: MetaDataBrowser
- closeByTab()
: TOPPASBase
, TOPPViewBase
- closed_boxes_
: IsotopeWaveletTransform< PeakType >
- closeEvent()
: IDEvaluationBase
, INIFileEditorWindow
, TOPPASBase
, TOPPViewBase
, SpectrumWidget
, TOPPASWidget
- closeFile()
: TOPPASBase
, TOPPViewBase
- closeListEditor_()
: ParamEditorDelegate
- cluster()
: ClusterHierarchical
, HierarchicalClustering< PointRef >
, SILACClustering
- Cluster()
: HierarchicalClustering< PointRef >::Cluster
- ClusterAnalyzer()
: ClusterAnalyzer
- ClusterCells
: HierarchicalClustering< PointRef >
- ClusterCenter
: HashGrid< Cluster >
- clusterData()
: SILACAnalyzer
- ClusteredMS2ConsensusSpectrum()
: ClusteredMS2ConsensusSpectrum
- ClusterFunctor()
: ClusterFunctor
- ClusterHierarchical()
: ClusterHierarchical
- clusterIndex_()
: HierarchicalClustering< PointRef >
- Clustering
: SILACAnalyzer
- ClusterPointType
: FeatureDeconvolution
- clusterSeeds_()
: IsotopeWaveletTransform< PeakType >
- ClusterTrees
: HierarchicalClustering< PointRef >
- cm_cf_ids_
: MzQuantMLHandler
- CMD
: ProgressLogger
- cmp1_
: LexicographicComparator< Cmp1, Cmp2 >
- cmp2_
: LexicographicComparator< Cmp1, Cmp2 >
- cmp_
: Compomer
, PointerComparator< Cmp >
, ReverseComparator< Cmp >
- cmpOligos_()
: LibSVMEncoder
- cmsq_
: MzQuantMLHandler
- CNG
: InstrumentSettings
- CNL
: InstrumentSettings
- code_
: LocalLinearMap
- coeff_quad_fit_
: TOFCalibration
- coeffs_
: TransformationModelBSpline
, GaussFilterAlgorithm
, SavitzkyGolayFilter
- cohesion()
: ClusterAnalyzer
- col()
: Matrix< Value >
- colIndex()
: Matrix< Value >
- collectDecompositionsRecursively_()
: IntegerMassDecomposer< ValueType, DecompositionValueType >
- collectRatios_()
: IsobaricNormalizer
- collectSetParameter()
: QcMLFile
- COLLISION_QUADRUPOLE
: Instrument
- colnames()
: IDataFrameWriter
, DataMatrix
, CSVWriter
- colnames_
: DataMatrix
- color()
: MultiGradient
- color_
: Annotation1DPeakItem
, ColorSelector
, TOPPASEdge
- ColorSelector()
: ColorSelector
- cols()
: Matrix< Value >
- cols_
: Matrix< Value >
- colTypes
: QcMLFile::Attachment
- column_
: HPLC
- colunit_peptide
: MzTabUnitIdMetaData
- colunit_protein
: MzTabUnitIdMetaData
- colunit_small_molecule
: MzTabUnitIdMetaData
- combinations_logic_
: CVMappingRule
- CombinationsLogic
: CVMappingRule
- command
: TOPPASScene::TOPPProcess
- commandline
: ToolExternalDetails
- comment_
: ChromatogramSettings
, ExperimentalSettings
, HPLC
, MetaInfoDescription
, Sample
, SampleTreatment
, SpectrumSettings
, ExperimentalSettingsVisualizer
, SpectrumSettingsVisualizer
- commitAndCloseComboBox_()
: ParamEditorDelegate
- commitAndCloseLineEdit_()
: ParamEditorDelegate
- commitAndCloseListEditor_()
: ParamEditorDelegate
- Compare()
: MapAlignmentAlgorithmSpectrumAlignment::Compare
- compare_AC()
: MS2Info
- compare_feature_mass()
: LCMS
- compareFeatureMassValuesAtPPMLevel()
: SHFeature
- compareFiles()
: FuzzyStringComparator
- CompareFouriertransform()
: CompareFouriertransform
- compareIteratorToPeak()
: ProcessData
- compareLines_()
: FuzzyStringComparator
- compareMassValuesAtPPMLevel()
: SuperHirnUtil
- compareMZFeatureBeloning()
: MS1FeatureMerger
- comparepeaks_()
: SpectrumCheapDPCorr
- compareSpectra_()
: CompNovoIdentificationBase
- compareStreams()
: FuzzyStringComparator
- compareStrings()
: FuzzyStringComparator
- compatible()
: MassDecomposition
- compatibleIDs_()
: QTClusterFinder
, StablePairFinder
- ComplementFilter()
: ComplementFilter
- ComplementMarker()
: ComplementMarker
- CompleteLinkage()
: CompleteLinkage
- completion_time_
: DataProcessing
, DataProcessingVisualizer
- CompNovoIdentification()
: CompNovoIdentification
- CompNovoIdentificationBase()
: CompNovoIdentificationBase
- CompNovoIdentificationCID()
: CompNovoIdentificationCID
- CompNovoIonScoring()
: CompNovoIonScoring
- CompNovoIonScoringBase()
: CompNovoIonScoringBase
- CompNovoIonScoringCID()
: CompNovoIonScoringCID
- Compomer()
: Compomer
- compomer_
: ChargePair
- CompomerComponents
: Compomer
- CompomerIterator
: MassExplainer
- CompomerSide
: Compomer
- compomerValid_()
: MassExplainer
- composition_
: PTMXMLHandler
- Compound
: TargetedExperiment
, Compound
- compound_ref_
: ReactionMonitoringTransition
, IncludeExcludeTarget
- compounds_
: TargetedExperiment
- compress()
: ConvexHull2D
- CompressedInputSource()
: CompressedInputSource
- compression
: MzMLHandler< MapType >::BinaryData
- compressionType_
: MzXMLHandler< MapType >
- compressSignals_()
: RawMSSignalSimulation
- compressTrieDB()
: InspectOutfile
- compute()
: FeatureDeconvolution
, ILPDCWrapper
, AScore
, MassExplainer
- compute_CHRG()
: LCElutionPeak
- compute_delta_area()
: LCElutionPeak
- compute_F()
: SpectraSTSimilarityScore
- compute_site_determining_ions()
: AScore
- computeApexSNR()
: ElutionPeakDetection
- computeAveragineSimScore_()
: FeatureFindingMetabo
- computeBoundaries_()
: EGHModel
- computeClustering_()
: QTClusterFinder
- computeConsensus()
: ConsensusFeature
- computeConsensusStats_()
: LayerStatisticsDialog
- computeCorrelation()
: ConsensusMapNormalizerAlgorithmThreshold
- computeCosineSim_()
: AccurateMassSearchEngine
, FeatureFindingMetabo
- computeCoverage()
: ProteinIdentification
- computeCumulativeScore()
: AScore
- computeDechargeConsensus()
: ConsensusFeature
- computeDeltaArea()
: MS1FeatureMerger
- computeEuclideanDist_()
: AccurateMassSearchEngine
- computeFeatureStats_()
: LayerStatisticsDialog
- computeFileHash_()
: FileHandler
- computeFit_()
: TransformationModelBSpline
- computeFwhmArea()
: MassTrace
- computeFwhmAreaRobust()
: MassTrace
- computeFwhmAreaSmooth()
: MassTrace
- computeFwhmAreaSmoothRobust()
: MassTrace
- computeGoodness_()
: LinearRegression
- computeHighestPeptides()
: AScore
- computeIntensityHist()
: BackgroundIntensityBin
- computeIntensityOfMSD_()
: ProteinResolver
- computeIsotopeDistributionSize_()
: IsotopeWavelet
- computeIsotopePatternSimilarity_()
: AccurateMassSearchEngine
- computeKernelMatrix()
: SVMWrapper
- computeLabelingStatistics_()
: IsobaricQuantifier
- computeLCElutionPeakParameters()
: LCElutionPeak
- computeLinear_()
: TransformationModelBSpline
- computeMassTraceNoise()
: ElutionPeakDetection
- computeMassTraceSNR()
: ElutionPeakDetection
- computeMaxLikelihood()
: PosteriorErrorProbabilityModel
- computeMedians_()
: MapAlignmentAlgorithmIdentification
- computeMetaAverages_()
: LayerStatisticsDialog
- computeMetaDataArrayStats_()
: LayerStatisticsDialog
- computeMinSpacing()
: IsotopeWaveletTransform< PeakType >
- computeMonoisotopicConsensus()
: ConsensusFeature
- computeMS2SpectrumParameters()
: MS2ConsensusSpectrum
- computeNeutralMassFromAdduct_()
: AccurateMassSearchEngine
- computeNewMS1FeatureParameters()
: MS1FeatureMerger
- computeNormalizationFactors()
: ConsensusMapNormalizerAlgorithmMedian
- computeNormalizationFactors_()
: IsobaricNormalizer
- computeOLSCoeff_()
: FeatureFindingMetabo
- computePeakArea()
: MassTrace
- computePeakPriority_()
: SimpleExtender< PeakType, FeatureType >
- computePeakStats_()
: LayerStatisticsDialog
- computePermutations_()
: AScore
- computePrecursorPurity_()
: IsobaricChannelExtractor
- computeProbability()
: PosteriorErrorProbabilityModel
- computeQuality_()
: QTCluster
- computeRegression()
: LinearRegression
- computeRegressionNoIntercept()
: LinearRegression
- computeRegressionWeighted()
: LinearRegression
- computeSelection()
: Spectrum3DOpenGLCanvas
- computeSlice_()
: ILPDCWrapper
- computeSliceOld_()
: ILPDCWrapper
- computeSmoothedPeakArea()
: MassTrace
- computeStats_()
: IsobaricIsotopeCorrector
- computeSTN_()
: SignalToNoiseEstimator< Container >
, SignalToNoiseEstimatorMeanIterative< Container >
, SignalToNoiseEstimatorMedian< Container >
- computeTheoretical()
: EGHTraceFitter< PeakType >
, GaussTraceFitter< PeakType >
, TraceFitter< PeakType >
- computeTransformations_()
: MapAlignmentAlgorithmIdentification
- computeTupel_()
: AScore
- concatenate()
: String
, StringList
- concentration_
: Sample
- condensIsotopePattern()
: ConsensusIsotopePattern
- conditional_prob
: SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
- ConfidenceScoring()
: ConfidenceScoring
- Configuration
: ReactionMonitoringTransition
, IncludeExcludeTarget
- configuration_list_
: TraMLProduct
- ConfigurationListType
: TraMLHandler
- configurations_
: IncludeExcludeTarget
- configure()
: LogConfigHandler
- connect()
: DBConnection
- connectEdgeSignals()
: TOPPASScene
- connection_
: DBOpenDialog
- connection_name_
: DBConnection
- connectMergerVertexSignals()
: TOPPASScene
- connectOutputVertexSignals()
: TOPPASScene
- connectToDB_()
: TOPPViewBase
- connectToolVertexSignals()
: TOPPASScene
- connectVertexSignals()
: TOPPASScene
- connectVisualizer_()
: MetaDataBrowser
- cons_features_
: MRMTransitionGroup< SpectrumType, TransitionType >
- Consensus
: ProteinResolver::ResolverResult
- consensus
: LayerData
- consensus_
: BaseLabeler
- consensus_map
: ProteinResolver::ResolverResult
- consensus_map_
: ConsensusXMLFile
, MSSim
- consensus_maps_
: MSQuantifications
- ConsensusFeature()
: ConsensusFeature
- ConsensusID()
: ConsensusID
- ConsensusIsotopePattern()
: ConsensusIsotopePattern
- ConsensusIterator_
: LayerStatisticsDialog
- ConsensusMap()
: ConsensusMap
- ConsensusMapNormalizerAlgorithmMedian()
: ConsensusMapNormalizerAlgorithmMedian
- ConsensusMapNormalizerAlgorithmQuantile()
: ConsensusMapNormalizerAlgorithmQuantile
- ConsensusMapNormalizerAlgorithmThreshold()
: ConsensusMapNormalizerAlgorithmThreshold
- ConsensusMapSharedPtrType
: SpectrumCanvas
, TOPPViewBase
, LayerData
, TOPPViewIdentificationViewBehavior
, TOPPViewSpectraViewBehavior
- ConsensusMapType
: LayerData
, TOPPViewBase
, SpectrumCanvas
, TOPPViewIdentificationViewBehavior
, TOPPViewSpectraViewBehavior
- CONSENSUSXML
: FileTypes
- ConsensusXMLFile()
: ConsensusXMLFile
- consider_H2O_loss_
: ParentPeakMower
- consider_NH3_loss_
: ParentPeakMower
- console_width_
: ConsoleUtils
- ConsoleUtils()
: ConsoleUtils
- const_abundances_iterator
: IMSIsotopeDistribution
- const_bin_iterator
: BinnedSpectrum
- const_cell_iterator
: HashGrid< Cluster >
- const_grid_iterator
: HashGrid< Cluster >
- const_iterator
: EmpiricalFormula
, IMSAlphabet
, HashGrid< Cluster >
, ConstRefVector< ContainerT >
, DPosition< D, TCoordinateType >
, Matrix< Value >
, SparseVector< Value >
, ConsensusFeature
, MSExperiment< PeakT, ChromatogramPeakT >
, MassTrace
, IsotopeDistribution
- const_mass_iterator
: IMSAlphabet
- const_masses_iterator
: IMSIsotopeDistribution
- const_modified_residues_
: ResidueDB
- const_name_iterator
: IMSAlphabet
- const_peaks_iterator
: IMSIsotopeDistribution
- const_pointer
: AASequence::ConstIterator
, AASequence::Iterator
- const_reference
: AASequence::ConstIterator
, AASequence::Iterator
, ConstRefVector< ContainerT >
, Matrix< Value >
, SparseVector< Value >
- const_residues_
: ResidueDB
- const_reverse_iterator
: ConstRefVector< ContainerT >
, SparseVector< Value >
, ConsensusFeature
, MassTrace
, Matrix< Value >
- const_weights_
: SequestOutfile
- CONSTANT
: MassAnalyzer
- ConstAreaIterator
: MSExperiment< PeakT, ChromatogramPeakT >
- ConstEdgeIterator
: TOPPASScene
, TOPPASVertex
- ConstEntryIterator
: Param::ParamNode
- ConstIterator
: EmpiricalFormula
, IsotopeDistribution
, ConstRefVector< ContainerT >
, DPosition< D, TCoordinateType >
, Map< Key, T >
, Matrix< Value >
, String
, StringList
, ConsensusMap
, MSChromatogram< PeakT >
, MSExperiment< PeakT, ChromatogramPeakT >
, MSSpectrum< PeakT >
, Annotations1DContainer
, AASequence::ConstIterator
, HashGrid< Cluster >::ConstIterator
, Histogram< ValueType, BinSizeType >
, FeatureMap< FeatureT >
, SparseVector< Value >
- ConstNodeIterator
: Param::ParamNode
- ConstPeakIterator
: PeakPickerCWT
- constraints_type
: RealMassDecomposer
- ConstReference
: Matrix< Value >
, FeatureMap< FeatureT >
- ConstRefVector
: ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
, ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
, ConstRefVector< ContainerT >
- ConstRefVectorConstIterator()
: ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
- ConstRefVectorIterator()
: ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
- ConstReverseIterator
: ConstRefVector< ContainerT >
, Map< Key, T >
, Matrix< Value >
, String
, StringList
, ConsensusMap
, FeatureMap< FeatureT >
, MSChromatogram< PeakT >
, MSSpectrum< PeakT >
, SparseVector< Value >
- constructClusteredConsenusSpectraFragments()
: ClusteredMS2ConsensusSpectrum
- constructConsusPattern()
: ConsensusIsotopePattern
- constructMS1FeatureFromMS2Feature()
: FTPeakDetectController
- ConstVertexIterator
: TOPPASScene
- Contact()
: Contact
, TargetedExperiment
- contact_affiliation
: MzTabUnitIdMetaData
- contact_email
: MzTabUnitIdMetaData
- contact_info_
: ContactPersonVisualizer
, ContactPerson
- contact_name
: MzTabUnitIdMetaData
- contact_ref
: Prediction
, Configuration
- ContactPerson()
: ContactPerson
- ContactPersonVisualizer()
: ContactPersonVisualizer
- contacts_
: ExperimentalSettings
, TargetedExperiment
- container
: IMSAlphabet
- container_type
: LinearInterpolation< Key, Value >
, BilinearInterpolation< Key, Value >
, Matrix< Value >
- ContainerType
: IMSAlphabetParser< AlphabetElementType, Container, InputSource >
, LmaIsotopeFitter1D::Data
, LinearInterpolation< Key, Value >
, Matrix< Value >
, BilinearInterpolation< Key, Value >
, IsotopeDistribution
, MSChromatogram< PeakT >
, MSSpectrum< PeakT >
, EGHModel
, LevMarqFitter1D
, EmgModel
, ConstRefVector< ContainerT >
- contains()
: DoubleList
, StringList
, IntList
- containsMS1Scans()
: TOPPViewBase
- containsMSLevel()
: PeakFileOptions
- containsTag()
: MassDecomposition
- contaminants_
: RawMSSignalSimulation
- contaminants_loaded_
: RawMSSignalSimulation
- contaminants_map_
: MSSim
- context_add_
: SpectrumCanvas
- contextMenuEvent()
: Spectrum3DCanvas
, TOPPASVertex
, TOPPASEdge
, MultiGradientSelector
, EnhancedTabBar
, TOPPASTabBar
, Spectrum1DCanvas
, TOPPASLogWindow
, Spectrum2DCanvas
, TOPPASScene
- CONTINUOUS
: LPWrapper
- CONTINUOUSFLOWFASTATOMBOMBARDMENT
: IonSource
- ContinuousWaveletTransform()
: ContinuousWaveletTransform
- ContinuousWaveletTransformNumIntegration()
: ContinuousWaveletTransformNumIntegration
- ControlledVocabulary()
: ControlledVocabulary
- CONVERSION_DTA
: DataProcessing
- CONVERSION_MZDATA
: DataProcessing
- CONVERSION_MZML
: DataProcessing
- CONVERSION_MZXML
: DataProcessing
- CONVERSIONDYNODE
: IonDetector
- CONVERSIONDYNODEELECTRONMULTIPLIER
: IonDetector
- CONVERSIONDYNODEPHOTOMULTIPLIER
: IonDetector
- ConversionError()
: ConversionError
- convert()
: TransitionHelper
, ConsensusMap
, StringManager
, ConsensusMap
, StringManager
, ConsensusMap
- convert_ms_peaks()
: ProcessData
- convert_to_LC_elution_peak()
: ProcessData
- convertChromatogramsToSpectra()
: ChromatogramTools
- convertModificationSet_()
: XTandemInfile
- convertPeptideIdScores_()
: PrecursorIonSelection
- convertPeptideToAASequence()
: OpenSwathDataAccessHelper
- convertSeedList()
: SeedListGenerator
- convertSpectraToChromatograms()
: ChromatogramTools
- convertTargetedExp()
: OpenSwathDataAccessHelper
- convertTargetedExperimentToTSV()
: TransitionTSVReader
- convertToOpenMSChromatogram()
: OpenSwathDataAccessHelper
- convertToOpenMSSpectrum()
: OpenSwathDataAccessHelper
- convertToSpectrumPtr()
: OpenSwathDataAccessHelper
- convertTSVToTargetedExperiment()
: TransitionTSVReader
- convex_hull_
: Feature
- convex_hulls_
: Feature
- convex_hulls_modified_
: Feature
- ConvexHull2D()
: ConvexHull2D
- convolve_()
: IsotopeDistribution
- convolvePow_()
: IsotopeDistribution
- convolveSquare_()
: IsotopeDistribution
- cookie_
: MascotRemoteQuery
- coord
: HierarchicalClustering< PointRef >::TreeNode
- coordDist_()
: HierarchicalClustering< PointRef >
- coordElemDiv_()
: HierarchicalClustering< PointRef >
- coordElemGreater_()
: HierarchicalClustering< PointRef >
- coordinate_
: DPosition< D, TCoordinateType >
- coordinate_container
: BasicStatistics< RealT >
- CoordinateType
: Annotations1DContainer
, SimpleExtender< PeakType, FeatureType >
, BaseModel< D >
, LmaGaussModel
, LmaIsotopeModel
, Fitter1D
, BiGaussModel
, EmgModel
, AveragePosition< D >
, MSChromatogram< PeakT >
, MSExperiment< PeakT, ChromatogramPeakT >
, Peak1D
, DRange< D >
, ChromatogramPeak
, FeatureDeconvolution
, InterpolationModel
, IsotopeModel
, Peak2D
, DPosition< D, TCoordinateType >
, DBoundingBox< D >
, DIntervalBase< D >
, AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
, MSSpectrum< PeakT >
, EGHModel
, ExtendedIsotopeModel
, FeaFiModule< PeakType, FeatureType >
, FeatureFinderAlgorithm< PeakType, FeatureType >
, GaussModel
, LmaIsotopeFitter1D::Data
, ModelFitter< PeakType, FeatureType >
, Annotation1DItem
- coordScalarDiv_()
: HierarchicalClustering< PointRef >
- copy()
: Param
- copy_()
: HiddenMarkovModel
, TOPPASOutputFileListVertex
- copyLayer()
: TOPPViewBase
- copySelected()
: TOPPASScene
- cord_
: LocalLinearMap
- corner_
: Spectrum3DOpenGLCanvas
- corr_max
: Summary
- corr_mean
: Summary
- corr_min
: Summary
- correctIsotopicImpurities()
: IsobaricIsotopeCorrector
- correctly_assigned_fit_param_
: PosteriorErrorProbabilityModel
- correctMasses()
: MRMDecoy
- correlate_()
: PeakPickerCWT
- correlationFilter1_()
: SILACFilter
- correlationFilter2_()
: SILACFilter
- corresponding_protein_accessions_
: PeptideHit
- COTRANSLATIONAL
: ResidueModification
- count()
: mean_and_stddev
, LayerStatisticsDialog::MetaStatsValue_
- count_
: BigString
- count_trans_
: HiddenMarkovModel
- count_trans_all_
: HiddenMarkovModel
- counter
: LogStreamBuf::LogCacheStruct
- counter_
: PrecursorIonSelectionPreprocessing
- countFreeIDs()
: DocumentIDTagger
- countIntensities_()
: SvmTheoreticalSpectrumGeneratorTrainer
- countIonizedResidues_()
: IonizationSimulation
- countMissedCleavagesTryptic_()
: CompNovoIdentificationBase
- countMS1Zeros()
: TOPPViewBase
- countPeptides_()
: PeptideAndProteinQuant
- countTargetDecoy()
: ProteinResolver
- countTreatments()
: Sample
- cov_
: TransformationModelBSpline
- coverage
: ProteinResolver::ProteinEntry
- coverage_
: ProteinHit
- cpep_id_
: MzIdentMLHandler
- cpro_id_
: MzIdentMLHandler
- cpu_speed_
: StopWatch
- create()
: TrypticIterator
, MapAlignmentEvaluationAlgorithmRecall
, IntensityBalanceFilter
, MapAlignmentAlgorithmIdentification
, FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
, PeakAlignment
, VersionInfo::VersionDetails
, CompareFouriertransform
, ComplementMarker
, IsotopeMarker
, FastaIterator
, SILACLabeler
, FeatureFinderAlgorithmMRM< PeakType, FeatureType >
, IsotopeModel
, LmaIsotopeModel
, FeatureFinderAlgorithmSimple< PeakType, FeatureType >
, EdwardsLippertIterator
, FeatureGroupingAlgorithmIdentification
, FeatureFinderAlgorithmSH< PeakType, FeatureType >
, AverageLinkage
, LmaGaussFitter1D
, EdwardsLippertIteratorTryptic
, LmaIsotopeFitter1D
, LabeledPairFinder
, GaussFitter1D
, FeatureGroupingAlgorithmUnlabeled
, ProductModel< 2 >
, QTClusterFinder
, MapAlignmentEvaluationAlgorithmPrecision
, MapAlignmentAlgorithmSpectrumAlignment
, FeatureFinderAlgorithmSimplest< PeakType, FeatureType >
, EGHModel
, MapAlignmentAlgorithmPoseClustering
, GaussModel
, FeatureGroupingAlgorithmQT
, DoubleList
, IsotopeFitter1D
, EGHFitter1D
, BinnedSharedPeakCount
, NeutralLossMarker
, IsotopeDiffFilter
, FeatureFinderAlgorithmPicked< PeakType, FeatureType >
, StablePairFinder
, ExtendedIsotopeFitter1D
, LmaGaussModel
, SpectrumCheapDPCorr
, CompleteLinkage
, PoseClusteringAffineSuperimposer
, ITRAQLabeler
, IntList
, PoseClusteringShiftSuperimposer
, SimplePairFinder
, BinnedSumAgreeingIntensities
, SpectraSTSimilarityScore
, O18Labeler
, SingleLinkage
, BinnedSpectralContrastAngle
, NeutralLossDiffFilter
, TICFilter
, BiGaussFitter1D
, StringList
, SpectrumAlignmentScore
, ZhangSimilarityScore
, GoodDiffFilter
, DoubleList
, IntList
, SteinScottImproveScore
, FastaIteratorIntern
, ComplementFilter
, Factory< FactoryProduct >
, EmgFitter1D
, StringList
, ExtendedIsotopeModel
, ICPLLabeler
, BiGaussModel
, EmgModel
, LabelFreeLabeler
, FeatureGroupingAlgorithmLabeled
, SpectrumPrecursorComparator
- create_rows_for_commmon_metavalue_
: SpectraIdentificationViewWidget
- createAdduct_()
: MassExplainer
- createAndSolveCombinedLPFeatureBased_()
: PSLPFormulation
- createAndSolveCombinedLPForKnownLCMSMapFeatureBased()
: PSLPFormulation
- createAndSolveILP_()
: PSLPFormulation
- createAndSolveILPForInclusionListCreation()
: PSLPFormulation
- createAndSolveILPForKnownLCMSMapFeatureBased()
: PSLPFormulation
- createConsensIsotopPattern()
: LCElutionPeak
- createContaminants_()
: RawMSSignalSimulation
- createDB()
: DBAdapter
- createDirs()
: TOPPASToolVertex
- createEditor()
: ListEditorDelegate
, ParamEditorDelegate
- createExperiment()
: RTSimulation
- createFeatureElutionProfiles()
: SuperHirnParameters
- createFeatureElutionProfiles_
: SuperHirnParameters
- createFeatureMap_()
: MSSim
- createHRData()
: FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >
- createIfNotExists_()
: MetaInfoInterface
- createINI_()
: ToolsDialog
- createIntensityDistribution_()
: Spectrum1DWidget
, SpectrumWidget
, Spectrum2DWidget
, Spectrum3DWidget
- createMemdumpIndex()
: CachedmzML
- createMetaDistribution_()
: Spectrum1DWidget
, SpectrumWidget
, Spectrum2DWidget
, Spectrum3DWidget
- createModel()
: ModelDescription< D >
- createMRMFeature()
: MRMTransitionGroupPicker
- createMZFeatureClusters()
: MS1FeatureMerger
- createNewRow()
: ListTable
- createOutputDir()
: TOPPASOutputFileListVertex
- createPeptide_()
: TransitionTSVReader
- createPeptideReferenceMap_()
: TargetedExperiment
- createProtein_()
: TransitionTSVReader
- createProteinReferenceMap_()
: TargetedExperiment
- createProteinSequenceBasedLPInclusionList()
: OfflinePrecursorIonSelection
- createProteinToPeptideLinks_()
: MzTabFile
- createRandomPartitions()
: SVMWrapper
- createResources()
: TOPPASScene
- createStream_()
: StreamHandler
- createTOPPToolsTreeWidget()
: TOPPASBase
- createTransition_()
: TransitionTSVReader
- creation_date_
: Identification
- CRM
: InstrumentSettings
- cropFeature_()
: FeatureFinderAlgorithmPicked< PeakType, FeatureType >
- CSV
: FileTypes
- CsvFile()
: CsvFile
- CSVWriter()
: CSVWriter
- CTERM
: Modification
- CTerminal
: Residue
- curPos()
: GzipInputStream
, Bzip2InputStream
- curr_region_
: TwoDOptimization
- current_
: Param::ParamIterator
, SILACFiltering::SpectrumInterpolation
- current_assay_
: MzQuantMLHandler
- current_cf_id_
: MzQuantMLHandler
- current_chull_
: FeatureXMLFile
- current_col_types_
: MzQuantMLHandler
- current_count_
: MzQuantMLHandler
- current_dm_values_
: MzQuantMLHandler
- current_dp_
: MzQuantMLHandler
- current_feature_
: FeatureXMLFile
- current_files_
: MzQuantMLHandler
- current_id_
: MzQuantMLHandler
, MzMLHandler< MapType >
, MzMLValidator
- current_id_hit_
: MzIdentMLHandler
- current_layer_
: SpectrumCanvas
- current_mod_location_
: MzIdentMLHandler
- current_modifications_
: PepXMLFile
- current_mz_
: SILACFilter
- current_orderedps_
: MzQuantMLHandler
- current_pas_
: MzQuantMLHandler
- current_path_
: INIFileEditorWindow
, TOPPViewBase
, IDEvaluationBase
, TOPPASBase
- current_peak_
: AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
, SimpleSeeder< PeakType, FeatureType >
- current_peptide_
: PepXMLFile
- current_proteins_
: PepXMLFile
- current_row_
: MzQuantMLHandler
- current_scan_
: AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
- current_secs_
: StopWatch
- current_sequence_
: PepXMLFile
- current_spectrum_
: LayerData
- current_spectrum_id_
: MzIdentMLHandler
- current_sws_
: MzQuantMLHandler
- current_system_time_
: StopWatch
- current_usecs_
: StopWatch
- current_user_time_
: StopWatch
- currentChanged_()
: TOPPASTabBar
, EnhancedTabBar
- currentIdChanged()
: EnhancedTabBar
, TOPPASTabBar
- currentLayerParametersChanged_()
: Spectrum2DCanvas
- currentLayerParamtersChanged_()
: Spectrum1DCanvas
, Spectrum3DCanvas
- currentPeakData_()
: SpectrumCanvas
- curve()
: ROCCurve
- custom
: MzTabUnitIdMetaData
, MzTabSubIdMetaData
- customizations_
: InstrumentVisualizer
, Instrument
- cut()
: ClusterAnalyzer
- cut_off_
: BaseModel< D >
- cutoffNeg()
: ROCCurve
- cutoffPos()
: ROCCurve
- cutoffScore_
: MapAlignmentAlgorithmSpectrumAlignment
- CV()
: CV
, TargetedExperiment
- cv_
: MzIdentMLHandler
, TraMLHandler
, SemanticValidator
, MzMLHandler< MapType >
, MzQuantMLHandler
- cv_identifier_ref_
: CVMappingTerm
, CVTerm
- CV_label_
: MzTabParameter
- cv_options_
: PILISCrossValidation
- cv_params_
: MSQuantifications::AnalysisSummary
- cv_ref
: CVTerm::Unit
- cv_references_
: CVMappingFile
, CVMappings
- cv_references_vector_
: CVMappings
- cv_tag_
: SemanticValidator
- cv_terms_
: XMLHandler
, CVMappingRule
, CVTermList
- cvAcc
: QcMLFile::QualityParameter
, QcMLFile::Attachment
- CVMappingFile()
: CVMappingFile
- CVMappingRule()
: CVMappingRule
- CVMappings()
: CVMappings
- CVMappingTerm()
: CVMappingTerm
- cvp_stack_
: MzQuantMLHandler
- cvParam_()
: MzDataHandler< MapType >
- cvRef
: QcMLFile::QualityParameter
, QcMLFile::Attachment
- CVReference()
: CVReference
- cvs_
: TargetedExperiment
- cvStringToEnum_()
: XMLHandler
- CVTerm()
: ControlledVocabulary::CVTerm
, CVTerm
, ControlledVocabulary::CVTerm
, CVTerm
- CVTermList()
: CVTermList
- CYCLOTRON
: MassAnalyzer