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CVMappingFile.h
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31 // $Maintainer: Andreas Bertsch $
32 // $Authors: Andreas Bertsch $
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34 
35 #ifndef OPENMS_FORMAT_CVMAPPINGFILE_H
36 #define OPENMS_FORMAT_CVMAPPINGFILE_H
37 
38 #include <OpenMS/FORMAT/XMLFile.h>
41 
42 #include <vector>
43 
44 namespace OpenMS
45 {
46  class String;
47 
56  class OPENMS_DLLAPI CVMappingFile :
57  protected Internal::XMLHandler,
58  public Internal::XMLFile
59  {
60 public:
61 
63  CVMappingFile();
64 
66  virtual ~CVMappingFile();
67 
77  void load(const String & filename, CVMappings & cv_mappings, bool strip_namespaces = false);
78 
79 protected:
80 
81  // Docu in base class
82  void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes);
83 
84  // Docu in base class
85  void endElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname);
86 
87  // Docu in base class
88  void characters(const XMLCh * const chars, const XMLSize_t /*length*/);
89 
90 private:
91 
93  CVMappingFile(const CVMappingFile & rhs);
94 
96  CVMappingFile & operator=(const CVMappingFile & rhs);
97 
99 
101 
103 
104  std::vector<CVMappingRule> rules_;
105 
106  std::vector<CVReference> cv_references_;
107 
108  };
109 
110 } // namespace OpenMS
111 
112 #endif // OPENMS_FORMAT_CVMAPPINGFILE_H
A more convenient string class.
Definition: String.h:56
Base class for XML handlers.
Definition: XMLHandler.h:89
String tag_
Definition: CVMappingFile.h:98
bool strip_namespaces_
Definition: CVMappingFile.h:100
std::vector< CVReference > cv_references_
Definition: CVMappingFile.h:106
Representation of a CV Mapping rule used by CVMappings.
Definition: CVMappingRule.h:51
CVMappingRule actual_rule_
Definition: CVMappingFile.h:102
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:51
Representation of controlled vocabulary mapping rules (for PSI formats)
Definition: CVMappings.h:56
std::vector< CVMappingRule > rules_
Definition: CVMappingFile.h:104
Used to load CvMapping files.
Definition: CVMappingFile.h:56

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:12 using doxygen 1.8.5