This application is used embed tables or pictures generated externally as attachments to existing quality parameters in the targeted run/set meant to have attachments. If no quality parameter is present an empty value one will be generated with the name of "default set name"/"default mzML file".
pot. predecessor tools | ![]() ![]() | pot. successor tools |
QCExporter | QCMerger | |
XTandemAdapter | QCShrinker |
If there is additional data from external tools in tabular format containing additional quality control parameter (qp) to runs or sets, or even new runs, in the qcml file at in
it can be imported to complete the qcml file, written subsequently to out
.
table
The table containing the additional qp values in the columns. First row is considered containing the header. The target run or set names/ids are indicated by column "raw data file", so each row after the header will contain the values of qps for that run.mapping
The mapping of the table header to the according qp cvs, also in csv format. The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions.The command line parameters of this tool are:
QCImporter -- Imports tables with quality control parameters into qcml files. Version: 1.11.1 Nov 14 2013, 11:18:15, Revision: 11976 Usage: QCImporter <options> Options (mandatory options marked with '*'): -in <file> Input qcml file (valid formats: 'qcML') -table <file>* The table containing the additional qp values in the columns. First row is considered containing the header. The target run or set names/ids are indicated by column "raw data file", so each row after the header will contain the values of qps for that run. (valid formats: 'csv') -mapping <file>* The mapping of the table header to the according qp cvs, also in csv format. The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions. (valid formats: 'csv') -out <file>* Output extended qcML file (valid formats: 'qcML') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:24 using doxygen 1.8.5 |