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  A  
MetaInfoInterface (OpenMS)   
MetaInfoRegistry (OpenMS)   
AAIndex (OpenMS)   MetaInfoVisualizer (OpenMS)   
AASequence (OpenMS)   LayerStatisticsDialog::MetaStatsValue_ (OpenMS)   
FuzzyStringComparator::AbortComparison (OpenMS)   MissingInformation (OpenMS::Exception)   
AccurateMassSearchEngine (OpenMS)   MockFeature (OpenSwath)   
AccurateMassSearchResult (OpenMS)   MockMRMFeature (OpenSwath)   
Acquisition (OpenMS)   MockSignalToNoise (OpenSwath)   
AcquisitionInfo (OpenMS)   MockTransitionGroup (OpenSwath)   
AcquisitionInfoVisualizer (OpenMS)   ModelDescription (OpenMS)   
AcquisitionVisualizer (OpenMS)   ModelFitter (OpenMS)   
AcqusHandler (OpenMS::Internal)   Modification (OpenMS)   
Adduct (OpenMS)   Peptide::Modification (OpenMS::TargetedExperimentHelper)   
PepXMLFile::AminoAcidModification (OpenMS)   ModificationDefinition (OpenMS)   
MSQuantifications::AnalysisSummary (OpenMS)   ModificationDefinitionsSet (OpenMS)   
Annotation1DDistanceItem (OpenMS)   ModificationMassesResult   
Annotation1DItem (OpenMS)   ModificationsDB (OpenMS)   
Annotation1DPeakItem (OpenMS)   ModificationVisualizer (OpenMS)   
Annotation1DTextItem (OpenMS)   ModifierRep (OpenMS)   
Annotations1DContainer (OpenMS)   MorphologicalFilter (OpenMS)   
AnnotationStatistics (OpenMS)   MRMDecoy (OpenMS)   
AreaIterator (OpenMS::Internal)   MRMFeature (OpenMS)   
AScore (OpenMS)   MRMFeatureFinderScoring (OpenMS)   
MSQuantifications::Assay (OpenMS)   MRMFeatureOpenMS (OpenMS)   
AsymmetricStatistics (OpenMS::Math)   MRMFragmentSelection (OpenMS)   
QcMLFile::Attachment (OpenMS)   MRMRTNormalizer (OpenMS)   
AverageLinkage (OpenMS)   MRMScoring (OpenSwath)   
AveragePosition (OpenMS::Math)   MRMTransitionGroup (OpenMS)   
AxisPainter (OpenMS)   MRMTransitionGroupPicker (OpenMS)   
AxisTickCalculator (OpenMS)   MS1FeatureMerger (OpenMS)   
AxisWidget (OpenMS)   MS1Signal (OpenMS)   
  B  
MS2ConsensusSpectrum (OpenMS)   
MS2Feature (OpenMS)   
BackgroundControl (OpenMS)   MS2File (OpenMS)   
BackgroundIntensityBin (OpenMS)   MS2Fragment (OpenMS)   
Base64 (OpenMS)   MS2Info (OpenMS)   
BaseException (OpenMS::Exception)   MSChromatogram (OpenMS)   
BaseFeature (OpenMS)   ProteinResolver::MSDGroup (OpenMS)   
BaseGroupFinder (OpenMS)   MSExperiment (OpenMS)   
BaseLabeler (OpenMS)   MsInspectFile (OpenMS)   
BaseModel (OpenMS)   MSPeak (OpenMS)   
BaseSuperimposer (OpenMS)   MSPFile (OpenMS)   
BaseVisualizer (OpenMS)   MSQuantifications (OpenMS)   
BaseVisualizerGUI (OpenMS)   MSSim (OpenMS)   
BasicStatistics (OpenMS::Math)   MSSpectrum (OpenMS)   
BernNorm (OpenMS)   MultiGradient (OpenMS)   
BiGaussFitter1D (OpenMS)   MultiGradientSelector (OpenMS)   
BiGaussModel (OpenMS)   mySqrt (OpenSwath)   
BigString (OpenMS)   MzDataFile (OpenMS)   
BilinearInterpolation (OpenMS::Math)   MzDataHandler (OpenMS::Internal)   
BinaryComposeFunctionAdapter (OpenMS)   MzDataValidator (OpenMS::Internal)   
MzMLHandler::BinaryData (OpenMS::Internal)   MzIdentMLFile (OpenMS)   
BinaryDataArray (OpenSwath)   MzIdentMLHandler (OpenMS::Internal)   
BinaryDataArray (OpenMS::Interfaces)   MzIdentMLValidator (OpenMS::Internal)   
BinaryTreeNode (OpenMS)   MzIterator (OpenMS::Internal)   
EnzymaticDigestion::BindingSite (OpenMS)   Peak2D::MZLess (OpenMS)   
BinnedSharedPeakCount (OpenMS)   Peak1D::MZLess (OpenMS)   
BinnedSpectralContrastAngle (OpenMS)   MSChromatogram::MZLess (OpenMS)   
BinnedSpectrum (OpenMS)   MzMLFile (OpenMS)   
BinnedSpectrumCompareFunctor (OpenMS)   MzMLHandler (OpenMS::Internal)   
BinnedSumAgreeingIntensities (OpenMS)   MzMLValidator (OpenMS::Internal)   
SILACFiltering::BlacklistEntry (OpenMS)   MzQuantMLFile (OpenMS)   
HierarchicalClustering::BoundingBox (OpenMS)   MzQuantMLHandler (OpenMS::Internal)   
IsotopeWaveletTransform::BoxElement (OpenMS)   MzQuantMLValidator (OpenMS::Internal)   
FeatureFinderAlgorithmIsotopeWavelet::BoxElement (OpenMS)   MzTab (OpenMS)   
BufferOverflow (OpenMS::Exception)   MzTabBoolean (OpenMS)   
Bzip2Ifstream (OpenMS)   MzTabDouble (OpenMS)   
Bzip2InputStream (OpenMS)   MzTabDoubleList (OpenMS)   
  C  
MzTabFile (OpenMS)   
MzTabInteger (OpenMS)   
CachedmzML (OpenMS)   MzTabModification (OpenMS)   
CentroidData (OpenMS)   MzTabModificationList (OpenMS)   
CentroidPeak (OpenMS)   MzTabNullAbleBase (OpenMS)   
ItraqConstants::ChannelInfo (OpenMS)   MzTabNullAbleInterface (OpenMS)   
IsotopeCluster::ChargedIndexSet (OpenMS)   MzTabNullNaNAndInfAbleBase (OpenMS)   
ChargePair (OpenMS)   MzTabNullNaNAndInfAbleInterface (OpenMS)   
Chromatogram (OpenSwath)   MzTabParameter (OpenMS)   
Chromatogram (OpenMS::Interfaces)   MzTabParameterList (OpenMS)   
ChromatogramExtractor (OpenMS)   MzTabPeptideSectionRow (OpenMS)   
ChromatogramMeta (OpenSwath)   MzTabProteinSectionRow (OpenMS)   
ChromatogramMeta (OpenMS::Interfaces)   MzTabSmallMoleculeSectionRow (OpenMS)   
ChromatogramPeak (OpenMS)   MzTabSpectraRef (OpenMS)   
ChromatogramSettings (OpenMS)   MzTabString (OpenMS)   
ChromatogramTools (OpenMS)   MzTabStringList (OpenMS)   
EnzymaticDigestion::CleavageModel (OpenMS)   MzTabSubIdMetaData (OpenMS)   
HierarchicalClustering::Cluster (OpenMS)   MzTabUnitIdMetaData (OpenMS)   
ClusterAnalyzer (OpenMS)   MzXMLFile (OpenMS)   
ClusteredMS2ConsensusSpectrum (OpenMS)   MzXMLHandler (OpenMS::Internal)   
ClusterFunctor (OpenMS)   
  N  
ClusterHierarchical (OpenMS)   
CmpHypothesesByScore (OpenMS)   NeutralLossDiffFilter (OpenMS)   
CmpMassTraceByMZ (OpenMS)   NeutralLossMarker (OpenMS)   
ColorSelector (OpenMS)   NLargest (OpenMS)   
MapAlignmentAlgorithmSpectrumAlignment::Compare (OpenMS)   NonNegativeLeastSquaresSolver (OpenMS)   
CompareFouriertransform (OpenMS)   Normalizer (OpenMS)   
ComplementFilter (OpenMS)   BinnedSpectrum::NoSpectrumIntegrated (OpenMS)   
ComplementMarker (OpenMS)   FeatureFinderDefs::NoSuccessor (OpenMS)   
CompleteLinkage (OpenMS)   DBConnection::NotConnected (OpenMS)   
CompNovoIdentification (OpenMS)   NotImplemented (OpenMS::Exception)   
CompNovoIdentificationBase (OpenMS)   NullPointer (OpenMS::Exception)   
CompNovoIdentificationCID (OpenMS)   
  O  
CompNovoIonScoring (OpenMS)   
CompNovoIonScoringBase (OpenMS)   O18Labeler (OpenMS)   
CompNovoIonScoringCID (OpenMS)   OfflinePrecursorIonSelection (OpenMS)   
Compomer (OpenMS)   OMSSACSVFile (OpenMS)   
Compound (OpenMS::TargetedExperimentHelper)   OMSSAXMLFile (OpenMS)   
CompressedInputSource (OpenMS)   OpenMSLineEdit (OpenMS::Internal)   
ConfidenceScoring (OpenMS)   OpenMSOSInfo (OpenMS::Internal)   
Configuration (OpenMS::TargetedExperimentHelper)   OpenMSXMLFormatTarget (OpenMS::Internal)   
ConsensusFeature (OpenMS)   OpenSwath_Scores (OpenMS)   
ConsensusID (OpenMS)   OpenSwathDataAccessHelper (OpenMS)   
ConsensusIsotopePattern (OpenMS)   OpenSwathHelper (OpenMS)   
ConsensusMap (OpenMS)   MS1FeatureMerger::OPERATOR_FEATURE_TR (OpenMS)   
ConsensusMapNormalizerAlgorithmMedian (OpenMS)   LCMS::OPERATOR_FeatureCompare (OpenMS)   
ConsensusMapNormalizerAlgorithmQuantile (OpenMS)   LCMS::OPERATOR_MZ (OpenMS)   
ConsensusMapNormalizerAlgorithmThreshold (OpenMS)   OptimizePeakDeconvolution (OpenMS)   
ConsensusXMLFile (OpenMS)   OptimizePick (OpenMS)   
ConsoleUtils (OpenMS)   PILISCrossValidation::Option (OpenMS)   
HashGrid::ConstIterator (OpenMS)   OutOfGrid (OpenMS::Exception)   
AASequence::ConstIterator (OpenMS)   OutOfMemory (OpenMS::Exception)   
ConstRefVector (OpenMS)   OutOfRange (OpenMS::Exception)   
ConstRefVector::ConstRefVectorConstIterator (OpenMS)   
  P  
ConstRefVector::ConstRefVectorIterator (OpenMS)   
Contact (OpenMS::TargetedExperimentHelper)   PairComparatorFirstElement (OpenMS)   
ContactPerson (OpenMS)   PairComparatorFirstElementMore (OpenMS)   
ContactPersonVisualizer (OpenMS)   PairComparatorSecondElement (OpenMS)   
RawMSSignalSimulation::ContaminantInfo (OpenMS)   PairComparatorSecondElementMore (OpenMS)   
ContinuousWaveletTransform (OpenMS)   PairMatcherFirstElement (OpenMS)   
ContinuousWaveletTransformNumIntegration (OpenMS)   PairMatcherSecondElement (OpenMS)   
ControlledVocabulary (OpenMS)   Param (OpenMS)   
ConversionError (OpenMS::Exception)   ParamEditor (OpenMS)   
ConvexHull2D (OpenMS)   ParamEditorDelegate (OpenMS::Internal)   
CsvFile (OpenMS)   Param::ParamEntry (OpenMS)   
CSVWriter (OpenSwath)   ParameterInformation (OpenMS)   
cudaHelp (OpenMS)   Param::ParamIterator (OpenMS)   
CV (OpenMS::TargetedExperimentHelper)   Param::ParamNode (OpenMS)   
CVMappingFile (OpenMS)   ParamTree (OpenMS::Internal)   
CVMappingRule (OpenMS)   ParamXMLFile (OpenMS)   
CVMappings (OpenMS)   ParamXMLHandler (OpenMS::Internal)   
CVMappingTerm (OpenMS)   ParentPeakMower (OpenMS)   
CVReference (OpenMS)   ParseError (OpenMS::Exception)   
CVTerm (OpenMS)   IMSIsotopeDistribution::Peak (OpenMS::ims)   
SemanticValidator::CVTerm (OpenMS::Internal)   Peak1D (OpenMS)   
ControlledVocabulary::CVTerm (OpenMS)   Peak2D (OpenMS)   
CVTermList (OpenMS)   PeakAlignment (OpenMS)   
  D  
PeakPickerCWT::PeakArea_ (OpenMS)   
PeakFileOptions (OpenMS)   
TwoDOptimization::Data (OpenMS)   PeakIndex (OpenMS)   
OptimizePick::Data (OpenMS)   PeakIntensityPredictor (OpenMS)   
OptimizePeakDeconvolution::Data (OpenMS)   PeakMarker (OpenMS)   
LmaIsotopeFitter1D::Data (OpenMS)   PeakPickerCWT (OpenMS)   
LmaGaussFitter1D::Data (OpenMS)   PeakPickerHiRes (OpenMS)   
EmgFitter1D::Data (OpenMS)   PeakPickerSH (OpenMS)   
EGHFitter1D::Data (OpenMS)   PeakShape (OpenMS)   
DataFilters::DataFilter (OpenMS)   PeakSpectrumCompareFunctor (OpenMS)   
DataFilterDialog (OpenMS)   PeakTypeEstimator (OpenMS)   
DataFilters (OpenMS)   PeakWidthEstimator (OpenMS)   
DataMatrix (OpenSwath)   PenaltyFactors (OpenMS::OptimizationFunctions)   
DataProcessing (OpenMS)   PenaltyFactorsIntensity (OpenMS::OptimizationFunctions)   
DataProcessingVisualizer (OpenMS)   PepIterator (OpenMS)   
DataValue (OpenMS)   PepNovoInfile (OpenMS)   
Date (OpenMS)   PepNovoOutfile (OpenMS)   
DateTime (OpenMS)   Peptide (OpenSwath)   
DBAdapter (OpenMS)   PILISCrossValidation::Peptide (OpenMS)   
DBConnection (OpenMS)   Peptide (OpenMS::TargetedExperimentHelper)   
DBOpenDialog (OpenMS)   PeptideAndProteinQuant (OpenMS)   
DBoundingBox (OpenMS)   PeptideAndProteinQuant::PeptideData (OpenMS)   
DeconvPeak (OpenMS)   ProteinResolver::PeptideEntry (OpenMS)   
DefaultParamHandler (OpenMS)   PeptideEvidence (OpenMS)   
Deisotoper (OpenMS)   PeptideHit (OpenMS)   
DeNovoAlgorithm (OpenMS)   PeptideHitVisualizer (OpenMS)   
DeNovoIdentification (OpenMS)   PeptideIdentification (OpenMS)   
DeNovoIonScoring (OpenMS)   PeptideIdentificationVisualizer (OpenMS)   
DeNovoPostScoring (OpenMS)   PepXMLFile (OpenMS)   
DepletedIDPool (OpenMS::Exception)   PepXMLFileMascot (OpenMS)   
SvmTheoreticalSpectrumGenerator::DescriptorSet (OpenMS)   CompNovoIdentificationBase::Permut (OpenMS)   
DetectabilitySimulation (OpenMS)   PersistentObject (OpenMS)   
DiaPrescore (OpenMS)   PILISCrossValidation (OpenMS)   
DIAScoring (OpenMS)   PILISIdentification (OpenMS)   
Digestion (OpenMS)   PILISModel (OpenMS)   
DigestionVisualizer (OpenMS)   PILISModelGenerator (OpenMS)   
DigestSimulation (OpenMS)   PILISNeutralLossModel (OpenMS)   
DIntervalBase (OpenMS::Internal)   PILISScoring (OpenMS)   
DistanceMatrix (OpenMS)   PointerComparator (OpenMS)   
FeatureDistance::DistanceParams_ (OpenMS)   PoseClusteringAffineSuperimposer (OpenMS)   
DivisionByZero (OpenMS::Exception)   PoseClusteringShiftSuperimposer (OpenMS)   
DocumentIdentifier (OpenMS)   Peak2D::PositionLess (OpenMS)   
DocumentIdentifierVisualizer (OpenMS)   ChromatogramPeak::PositionLess (OpenMS)   
DocumentIDTagger (OpenMS)   PeakShape::PositionLess (OpenMS)   
DoubleList (OpenMS)   Peak1D::PositionLess (OpenMS)   
DPeak (OpenMS)   Postcondition (OpenMS::Exception)   
DPosition (OpenMS)   PosteriorErrorProbabilityModel (OpenMS::Math)   
DRange (OpenMS)   PrecisionWrapper (OpenMS)   
DRichPeak (OpenMS)   Precondition (OpenMS::Exception)   
DTA2DFile (OpenMS)   Precursor (OpenMS)   
DTAFile (OpenMS)   PrecursorIonSelection (OpenMS)   
  E  
PrecursorIonSelectionPreprocessing (OpenMS)   
PrecursorVisualizer (OpenMS)   
EDTAFile (OpenMS)   Prediction (OpenMS::TargetedExperimentHelper)   
EdwardsLippertIterator (OpenMS)   FuzzyStringComparator::PrefixInfo_ (OpenMS)   
EdwardsLippertIteratorTryptic (OpenMS)   SimpleExtender::IndexWithPriority::PriorityLess (OpenMS)   
EGHFitter1D (OpenMS)   ProbablePhosphoSites (OpenMS)   
EGHModel (OpenMS)   ProcessData (OpenMS)   
EGHTraceFitter (OpenMS)   Product (OpenMS)   
Element (OpenMS)   ProductModel (OpenMS)   
ElementDB (OpenMS)   ProductModel< 2 > (OpenMS)   
ElementNotFound (OpenMS::Exception)   ReactionMonitoringTransition::ProductMZLess (OpenMS)   
ElutionPeakDetection (OpenMS)   ProductVisualizer (OpenMS)   
EmgFitter1D (OpenMS)   ProgressLogger (OpenMS)   
EmgModel (OpenMS)   Protein (OpenSwath)   
EmgScoring (OpenMS)   Protein (OpenMS::TargetedExperimentHelper)   
EmpiricalFormula (OpenMS)   PeptideAndProteinQuant::ProteinData (OpenMS)   
XMLHandler::EndParsingSoftly (OpenMS::Internal)   ProteinResolver::ProteinEntry (OpenMS)   
EnhancedTabBar (OpenMS)   ProteinIdentification::ProteinGroup (OpenMS)   
EnhancedTabBarWidgetInterface (OpenMS)   ProteinHit (OpenMS)   
EnhancedWorkspace (OpenMS)   ProteinHitVisualizer (OpenMS)   
EnzymaticDigestion (OpenMS)   ProteinIdentification (OpenMS)   
EqualInTolerance (OpenMS)   ProteinIdentificationVisualizer (OpenMS)   
EquivalenceClassAA_ (seqan)   ProteinInference (OpenMS)   
EuclideanSimilarity (OpenMS)   ProteinResolver (OpenMS)   
ExperimentalSettings (OpenMS)   ProtonDistributionModel (OpenMS)   
ExperimentalSettingsVisualizer (OpenMS)   ProtXMLFile (OpenMS)   
ExtendedIsotopeFitter1D (OpenMS)   PSLPFormulation (OpenMS)   
ExtendedIsotopeModel (OpenMS)   PSProteinInference (OpenMS)   
  F  
PTMXMLFile (OpenMS)   
PTMXMLHandler (OpenMS::Internal)   
Factory (OpenMS)   Publication (OpenMS::TargetedExperimentHelper)   
FactoryBase (OpenMS)   
  Q  
FailedAPICall (OpenMS::Exception)   
FakeProcess (OpenMS)   QApplication   
FalseDiscoveryRate (OpenMS)   QApplicationTOPP (OpenMS)   
FASTAFile::FASTAEntry (OpenMS)   QcMLFile (OpenMS)   
FASTAFile (OpenMS)   QDate   
FastaIterator (OpenMS)   QDateTime   
FastaIteratorIntern (OpenMS)   QDialog   
FeaFiModule (OpenMS)   QFileSystemWatcher   
Feature (OpenMS)   QGLWidget   
FeatureDeconvolution (OpenMS)   QGraphicsItem   
FeatureDistance (OpenMS)   QGraphicsScene   
FeatureEditDialog (OpenMS)   QGraphicsView   
FeatureFileOptions (OpenMS)   QItemDelegate   
FeatureFinder (OpenMS)   QLineEdit   
FeatureFinderAlgorithm (OpenMS)   QListWidget   
FeatureFinderAlgorithmIsotopeWavelet (OpenMS)   QMainWindow   
FeatureFinderAlgorithmMRM (OpenMS)   QObject   
FeatureFinderAlgorithmPicked (OpenMS)   QProcess   
FeatureFinderAlgorithmPickedHelperStructs (OpenMS)   QTabBar   
FeatureFinderAlgorithmSH (OpenMS)   QTCluster (OpenMS)   
FeatureFinderAlgorithmSHCtrl (OpenMS)   QTClusterFinder (OpenMS)   
FeatureFinderAlgorithmSimple (OpenMS)   QTextEdit   
FeatureFinderAlgorithmSimplest (OpenMS)   QTreeWidget   
FeatureFinderDefs (OpenMS)   BaseFeature::QualityLess (OpenMS)   
FeatureFindingMetabo (OpenMS)   QcMLFile::QualityParameter (OpenMS)   
FeatureGroupingAlgorithm (OpenMS)   QuantitativeExperimentalDesign (OpenMS)   
FeatureGroupingAlgorithmIdentification (OpenMS)   QWidget   
FeatureGroupingAlgorithmLabeled (OpenMS)   QWorkspace   
FeatureGroupingAlgorithmQT (OpenMS)   
  R  
FeatureGroupingAlgorithmUnlabeled (OpenMS)   
FeatureHandle (OpenMS)   RangeManager (OpenMS)   
FeatureHandle::FeatureHandleMutable_ (OpenMS)   ConsensusFeature::Ratio (OpenMS)   
FeatureHypothesis (OpenMS)   RawData (OpenMS)   
FeatureLCProfile (OpenMS)   RawMSSignalSimulation (OpenMS)   
FeatureMap (OpenMS)   RawTandemMSSignalSimulation (OpenMS)   
FeatureOpenMS (OpenMS)   ReactionMonitoringTransition (OpenMS)   
FeatureXMLFile (OpenMS)   RealMassDecomposer (OpenMS::ims)   
IsotopeWavelet::fi_ (OpenMS)   Base64::Reinterpreter32_ (OpenMS)   
FidHandler (OpenMS::Internal)   Base64::Reinterpreter64_ (OpenMS)   
File (OpenMS)   RequiredParameterNotGiven (OpenMS::Exception)   
ConsensusMap::FileDescription (OpenMS)   Residue (OpenMS)   
FileEmpty (OpenMS::Exception)   ResidueDB (OpenMS)   
FileHandler (OpenMS)   ResidueModification (OpenMS)   
FileMapping (OpenMS::Internal)   ProteinResolver::ResolverResult (OpenMS)   
FileNotFound (OpenMS::Exception)   PeakWidthEstimator::Result (OpenMS)   
FileNotReadable (OpenMS::Exception)   RetentionTime (OpenMS::TargetedExperimentHelper)   
FileNotWritable (OpenMS::Exception)   ReverseComparator (OpenMS)   
FileTypes (OpenMS)   RichPeak1D (OpenMS)   
FileWatcher (OpenMS)   RichPeak2D (OpenMS)   
FilterFunctor (OpenMS)   RNPxlReportRow   
Fitter1D (OpenMS)   RNPxlReportRowHeader   
MSSpectrum::FloatDataArray (OpenMS)   ROCCurve (OpenMS::Math)   
MSChromatogram::FloatDataArray (OpenMS)   RtIterator (OpenMS::Internal)   
FoundProteinFunctor (seqan)   MSSpectrum::RTLess (OpenMS)   
FTPeakDetectController (OpenMS)   Peak2D::RTLess (OpenMS)   
FuzzyStringComparator (OpenMS)   ChromatogramPeak::RTLess (OpenMS)   
  G  
RTSimulation (OpenMS)   
  S  
GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math)   
GammaDistributionFitter (OpenMS::Math)   Sample (OpenMS)   
GaussFilter (OpenMS)   SampleChannels (OpenMS)   
GaussFilterAlgorithm (OpenMS)   SampleProteins (OpenMS)   
GaussFitter::GaussFitResult (OpenMS::Math)   SampleTreatment (OpenMS)   
GaussFitter (OpenMS::Math)   SampleVisualizer (OpenMS)   
GaussFitter1D (OpenMS)   SAValue< Index< StringSet< Peptide >, IndexWotd<> > > (seqan)   
SignalToNoiseEstimator::GaussianEstimate (OpenMS)   SaveImageDialog (OpenMS)   
GaussModel (OpenMS)   SavitzkyGolayFilter (OpenMS)   
GaussTraceFitter (OpenMS)   Scaler (OpenMS)   
GlobalExceptionHandler (OpenMS::Exception)   PSLPFormulation::ScanLess (OpenMS)   
glp_prob   ScanWindow (OpenMS)   
GoodDiffFilter (OpenMS)   ScanWindowVisualizer (OpenMS)   
Gradient (OpenMS)   ProteinHit::ScoreLess (OpenMS)   
GradientVisualizer (OpenMS)   PeptideHit::ScoreLess (OpenMS)   
GridFeature (OpenMS)   PeptideHit::ScoreMore (OpenMS)   
GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math)   ProteinHit::ScoreMore (OpenMS)   
GumbelDistributionFitter (OpenMS::Math)   ProteinIdentification::SearchParameters (OpenMS)   
GzipIfstream (OpenMS)   FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS)   
GzipInputStream (OpenMS)   SeedListGenerator (OpenMS)   
  H  
SemanticValidator (OpenMS::Internal)   
PrecursorIonSelection::SeqTotalScoreMore (OpenMS)   
HasActivationMethod (OpenMS)   SequestInfile (OpenMS)   
HashGrid (OpenMS)   SequestOutfile (OpenMS)   
HasMetaValue (OpenMS)   SHFeature (OpenMS)   
HasPrecursorCharge (OpenMS)   SignalToNoiseEstimator (OpenMS)   
HasScanMode (OpenMS)   SignalToNoiseEstimatorMeanIterative (OpenMS)   
HiddenMarkovModel (OpenMS)   SignalToNoiseEstimatorMedian (OpenMS)   
HierarchicalClustering (OpenMS)   SignalToNoiseOpenMS (OpenMS)   
Histogram (OpenMS::Math)   SILACAnalyzer (OpenMS)   
HistogramDialog (OpenMS)   SILACClustering (OpenMS)   
HistogramWidget (OpenMS)   SILACFilter (OpenMS)   
HMMState (OpenMS)   SILACFiltering (OpenMS)   
HPLC (OpenMS)   SILACLabeler (OpenMS)   
HPLCVisualizer (OpenMS)   SILACPattern (OpenMS)   
  I  
SILACPoint (OpenMS)   
SimpleExtender (OpenMS)   
IChromatogramsReader (OpenMS::Interfaces)   SimpleOpenMSSpectraFactory (OpenMS)   
IChromatogramsWriter (OpenMS::Interfaces)   SimplePairFinder (OpenMS)   
ICPLLabeler (OpenMS)   SimpleSeeder (OpenMS)   
IDataFrameWriter (OpenSwath)   SimRandomNumberGenerator (OpenMS)   
IDDecoyProbability (OpenMS)   ROCCurve::simsortdec (OpenMS::Math)   
Identification (OpenMS)   SingleLinkage (OpenMS)   
IdentificationHit (OpenMS)   SingletonRegistry (OpenMS)   
IDEvaluationBase (OpenMS)   ConsensusFeature::SizeLess (OpenMS)   
IDFilter (OpenMS)   SizeUnderflow (OpenMS::Exception)   
IDMapper (OpenMS)   Software (OpenMS)   
IDRipper (OpenMS)   SoftwareVisualizer (OpenMS)   
IdXMLFile (OpenMS)   LPWrapper::SolverParam (OpenMS)   
InclusionExclusionList::IEWindow (OpenMS)   SourceFile (OpenMS)   
IFeature (OpenSwath)   SourceFileVisualizer (OpenMS)   
IllegalArgument (OpenMS::Exception)   SparseVector (OpenMS)   
Map::IllegalKey (OpenMS)   SparseVector::SparseVectorConstIterator (OpenMS)   
IllegalPosition (OpenMS::Exception)   SparseVector::SparseVectorConstReverseIterator (OpenMS)   
IllegalSelfOperation (OpenMS::Exception)   SparseVector::SparseVectorIterator (OpenMS)   
IllegalTreeOperation (OpenMS::Exception)   SparseVector::SparseVectorReverseIterator (OpenMS)   
ILPDCWrapper (OpenMS)   SpecArrayFile (OpenMS)   
IMRMFeature (OpenSwath)   SpectraMerger::SpectraDistance_ (OpenMS)   
IMSAlphabet (OpenMS::ims)   SpectraIdentificationViewWidget (OpenMS)   
IMSAlphabetParser (OpenMS::ims)   SpectraMerger (OpenMS)   
IMSAlphabetTextParser (OpenMS::ims)   SpectraSTSimilarityScore (OpenMS)   
IMSElement (OpenMS::ims)   SpectraViewWidget (OpenMS)   
IMSIsotopeDistribution (OpenMS::ims)   Spectrum (OpenSwath)   
IncludeExcludeTarget (OpenMS)   Spectrum (OpenMS::Interfaces)   
InclusionExclusionList (OpenMS)   Spectrum1DCanvas (OpenMS)   
BinnedSpectrumCompareFunctor::IncompatibleBinning (OpenMS)   Spectrum1DGoToDialog (OpenMS)   
IncompatibleIterators (OpenMS::Exception)   Spectrum1DPrefDialog (OpenMS::Internal)   
FeatureHandle::IndexLess (OpenMS)   Spectrum1DWidget (OpenMS)   
PSLPFormulation::IndexLess (OpenMS)   Spectrum2DCanvas (OpenMS)   
IndexOverflow (OpenMS::Exception)   Spectrum2DGoToDialog (OpenMS)   
PSLPFormulation::IndexTriple (OpenMS)   Spectrum2DPrefDialog (OpenMS::Internal)   
IndexUnderflow (OpenMS::Exception)   Spectrum2DWidget (OpenMS)   
SimpleExtender::IndexWithPriority (OpenMS)   Spectrum3DCanvas (OpenMS)   
INIFileEditorWindow (OpenMS)   Spectrum3DOpenGLCanvas (OpenMS)   
InIntensityRange (OpenMS)   Spectrum3DPrefDialog (OpenMS::Internal)   
INIUpdater (OpenMS)   Spectrum3DWidget (OpenMS)   
InMSLevelRange (OpenMS)   SpectrumAccessOpenMS (OpenMS)   
InMzRange (OpenMS)   SpectrumAccessOpenMSCached (OpenMS)   
InPrecursorMZRange (OpenMS)   SpectrumAddition (OpenMS)   
FuzzyStringComparator::InputLine (OpenMS)   SpectrumAlignment (OpenMS)   
InRTRange (OpenMS)   SpectrumAlignmentDialog (OpenMS)   
InspectInfile (OpenMS)   SpectrumAlignmentScore (OpenMS)   
InspectOutfile (OpenMS)   SpectrumCanvas (OpenMS)   
Instrument (OpenMS)   SpectrumCheapDPCorr (OpenMS)   
Instrument (OpenMS::TargetedExperimentHelper)   SpectrumIdentification (OpenMS)   
InstrumentSettings (OpenMS)   SILACFiltering::SpectrumInterpolation (OpenMS)   
InstrumentSettingsVisualizer (OpenMS)   SpectrumMeta (OpenSwath)   
InstrumentVisualizer (OpenMS)   SpectrumMeta (OpenMS::Interfaces)   
ClusterFunctor::InsufficientInput (OpenMS)   SpectrumPrecursorComparator (OpenMS)   
MSSpectrum::IntegerDataArray (OpenMS)   SpectrumSettings (OpenMS)   
MSChromatogram::IntegerDataArray (OpenMS)   SpectrumSettingsVisualizer (OpenMS)   
IntegerMassDecomposer (OpenMS::ims)   SpectrumWidget (OpenMS)   
IntensityBalanceFilter (OpenMS)   SqrtMower (OpenMS)   
IntensityIterator (OpenMS::Internal)   StablePairFinder (OpenMS)   
IntensityIteratorWrapper (OpenMS::Internal)   PeptideAndProteinQuant::Statistics (OpenMS)   
IntensityLess (OpenMS::Internal)   SteinScottImproveScore (OpenMS)   
Peak2D::IntensityLess (OpenMS)   StopWatch (OpenMS)   
Peak1D::IntensityLess (OpenMS)   FuzzyStringComparator::StreamElement_ (OpenMS)   
ChromatogramPeak::IntensityLess (OpenMS)   StreamHandler (OpenMS)   
InternalCalibration (OpenMS)   LogStreamBuf::StreamStruct (OpenMS::Logger)   
InterpolationModel (OpenMS)   String (OpenMS)   
IntList (OpenMS)   MSChromatogram::StringDataArray (OpenMS)   
InvalidIterator (OpenMS::Exception)   MSSpectrum::StringDataArray (OpenMS)   
InvalidParameter (OpenMS::Exception)   StringList (OpenMS)   
DBConnection::InvalidQuery (OpenMS)   StringManager (OpenMS::Internal)   
InvalidRange (OpenMS::Exception)   SuffixArray (OpenMS)   
InvalidSize (OpenMS::Exception)   SuffixArrayPeptideFinder (OpenMS)   
InvalidValue (OpenMS::Exception)   SuffixArraySeqan (OpenMS)   
IOException (OpenMS::Exception)   SuffixArrayTrypticCompressed (OpenMS)   
TOPPASToolVertex::IOInfo (OpenMS)   SuffixArrayTrypticSeqan (OpenMS)   
IonDetector (OpenMS)   Summary (OpenMS)   
IonDetectorVisualizer (OpenMS)   SuperHirnParameters (OpenMS)   
IonizationSimulation (OpenMS)   SuperHirnUtil (OpenMS)   
DeNovoIonScoring::IonScore (OpenMS)   SVMData (OpenMS)   
CompNovoIonScoringBase::IonScore (OpenMS)   SvmTheoreticalSpectrumGenerator::SvmModelParameterSet (OpenMS)   
IonSource (OpenMS)   SvmTheoreticalSpectrumGenerator (OpenMS)   
IonSourceVisualizer (OpenMS)   SvmTheoreticalSpectrumGeneratorSet (OpenMS)   
SvmTheoreticalSpectrumGenerator::IonType (OpenMS)   SvmTheoreticalSpectrumGeneratorTrainer (OpenMS)   
ProteinResolver::ISDGroup (OpenMS)   SVMWrapper (OpenMS)   
IsEmptySpectrum (OpenMS)   SVOutStream (OpenMS)   
ISignalToNoise (OpenSwath)   
  T  
IsInCollisionEnergyRange (OpenMS)   
IsInIsolationWindowSizeRange (OpenMS)   Tagging (OpenMS)   
IsobaricChannelExtractor (OpenMS)   TaggingVisualizer (OpenMS)   
IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS)   TargetedExperiment (OpenMS)   
IsobaricIsotopeCorrector (OpenMS)   TargetedExperiment (OpenSwath)   
IsobaricNormalizer (OpenMS)   TextFile (OpenMS)   
IsobaricQuantifier (OpenMS)   FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS)   
IsobaricQuantifierStatistics (OpenMS)   TheoreticalSpectrumGenerationDialog (OpenMS)   
IsobaricQuantitationMethod (OpenMS)   TheoreticalSpectrumGenerator (OpenMS)   
IsotopeCluster (OpenMS)   ThresholdMower (OpenMS)   
IsotopeDiffFilter (OpenMS)   TICFilter (OpenMS)   
IsotopeDistribution (OpenMS)   TMTSixPlexQuantitationMethod (OpenMS)   
IsotopeDistributionCache (OpenMS)   TOFCalibration (OpenMS)   
IsotopeFitter1D (OpenMS)   ToolDescription (OpenMS::Internal)   
IsotopeMarker (OpenMS)   ToolDescriptionFile (OpenMS)   
IsotopeModel (OpenMS)   ToolDescriptionHandler (OpenMS::Internal)   
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS)   ToolDescriptionInternal (OpenMS::Internal)   
IsotopeWavelet (OpenMS)   ToolExternalDetails (OpenMS::Internal)   
IsotopeWaveletParallelFor (OpenMS)   ToolHandler (OpenMS)   
IsotopeWaveletTransform (OpenMS)   ToolsDialog (OpenMS)   
IsotopicDist (OpenMS)   TOPPASBase (OpenMS)   
ISpectraReader (OpenMS::Interfaces)   TOPPASEdge (OpenMS)   
ISpectraWriter (OpenMS::Interfaces)   TOPPASInputFileDialog (OpenMS)   
ISpectrumAccess (OpenSwath)   TOPPASInputFileListVertex (OpenMS)   
IsZoomSpectrum (OpenMS)   TOPPASInputFilesDialog (OpenMS)   
HashGrid::Iterator (OpenMS)   TOPPASIOMappingDialog (OpenMS)   
AASequence::Iterator (OpenMS)   TOPPASLogWindow (OpenMS)   
ITransitionGroup (OpenSwath)   TOPPASMergerVertex (OpenMS)   
ItraqChannelExtractor (OpenMS)   TOPPASOutputFileListVertex (OpenMS)   
ItraqConstants (OpenMS)   TOPPASOutputFilesDialog (OpenMS)   
ItraqEightPlexQuantitationMethod (OpenMS)   TOPPASResource (OpenMS)   
ItraqFourPlexQuantitationMethod (OpenMS)   TOPPASResources (OpenMS)   
ITRAQLabeler (OpenMS)   TOPPASScene (OpenMS)   
ItraqQuantifier (OpenMS)   TOPPASTabBar (OpenMS)   
ItraqQuantifier::ItraqQuantifierStats (OpenMS)   TOPPASToolConfigDialog (OpenMS)   
  K  
TOPPASToolVertex (OpenMS)   
TOPPASTreeView (OpenMS)   
KroenikFile (OpenMS)   TOPPASVertex (OpenMS)   
  L  
TOPPASVertexNameDialog (OpenMS)   
TOPPASWidget (OpenMS)   
LabeledPairFinder (OpenMS)   TOPPBase (OpenMS)   
LabelFreeLabeler (OpenMS)   TOPPASScene::TOPPProcess (OpenMS)   
LayerData (OpenMS)   TOPPRNPxl   
LayerStatisticsDialog (OpenMS)   TOPPViewBase (OpenMS)   
LCElutionPeak (OpenMS)   TOPPViewBehaviorInterface (OpenMS)   
LCMS (OpenMS)   TOPPViewIdentificationViewBehavior (OpenMS)   
LCMSCData (OpenMS)   TOPPViewOpenDialog (OpenMS)   
LevMarqFitter1D (OpenMS)   TOPPViewPrefDialog (OpenMS::Internal)   
LexicographicComparator (OpenMS)   TOPPViewSpectraViewBehavior (OpenMS)   
LibSVMEncoder (OpenMS)   PrecursorIonSelection::TotalScoreMore (OpenMS)   
LightModification (OpenSwath)   TraceFitter (OpenMS)   
LightPeptide (OpenSwath)   Param::ParamIterator::TraceInfo (OpenMS)   
LightProtein (OpenSwath)   TraMLFile (OpenMS)   
LightTargetedExperiment (OpenSwath)   TraMLHandler (OpenMS::Internal)   
LightTransition (OpenSwath)   TraMLProduct (OpenMS::TargetedExperimentHelper)   
LinearInterpolation (OpenMS::Math)   TraMLValidator (OpenMS::Internal)   
LinearRegression (OpenMS::Math)   IDDecoyProbability::Transformation_ (OpenMS)   
LinearResampler (OpenMS)   TransformationDescription (OpenMS)   
LinearResamplerAlign (OpenMS)   TransformationModel (OpenMS)   
ListEditor (OpenMS)   TransformationModelBSpline (OpenMS)   
ListEditorDelegate (OpenMS::Internal)   TransformationModelInterpolated (OpenMS)   
ListTable (OpenMS::Internal)   TransformationModelLinear (OpenMS)   
LocalLinearMap::LLMParam (OpenMS)   TransformationXMLFile (OpenMS)   
LmaGaussFitter1D (OpenMS)   TransitionGroupOpenMS (OpenMS)   
LmaGaussModel (OpenMS)   TransitionHelper (OpenSwath)   
LmaIsotopeFitter1D (OpenMS)   TransitionTSVReader (OpenMS)   
LmaIsotopeModel (OpenMS)   IsotopeWaveletTransform::TransSpectrum (OpenMS)   
LocalLinearMap (OpenMS)   HierarchicalClustering::TreeDistance (OpenMS)   
LogStreamBuf::LogCacheStruct (OpenMS::Logger)   HierarchicalClustering::TreeNode (OpenMS)   
LogConfigHandler (OpenMS)   TrypticIterator (OpenMS)   
LogStream (OpenMS::Logger)   TransitionTSVReader::TSVTransition (OpenMS)   
LogStreamBuf (OpenMS::Logger)   TwoDOptimization (OpenMS)   
LogStreamNotifier (OpenMS::Logger)   
  U  
LowessSmoothing (OpenMS)   
LPWrapper (OpenMS)   UnableToCalibrate (OpenMS::Exception)   
  M  
UnableToCreateFile (OpenMS::Exception)   
UnableToFit (OpenMS::Exception)   
Map (OpenMS)   UnaryComposeFunctionAdapter (OpenMS)   
MapAlignmentAlgorithm (OpenMS)   UnimodXMLFile (OpenMS)   
MapAlignmentAlgorithmIdentification (OpenMS)   UnimodXMLHandler (OpenMS::Internal)   
MapAlignmentAlgorithmPoseClustering (OpenMS)   UniqueIdGenerator (OpenMS)   
MapAlignmentAlgorithmSpectrumAlignment (OpenMS)   UniqueIdIndexer (OpenMS)   
MapAlignmentEvaluationAlgorithm (OpenMS)   UniqueIdInterface (OpenMS)   
MapAlignmentEvaluationAlgorithmPrecision (OpenMS)   CVTerm::Unit (OpenMS)   
MapAlignmentEvaluationAlgorithmRecall (OpenMS)   UnnormalizedComparator (OpenMS)   
MapAlignmentTransformer (OpenMS)   UnregisteredParameter (OpenMS::Exception)   
MappingParam (OpenMS::Internal)   
  V  
ConsensusFeature::MapsLess (OpenMS)   
MarkerIonExtractor   SparseVector::ValueProxy (OpenMS)   
MarkerMower (OpenMS)   PSLPFormulation::VariableIndexLess (OpenMS)   
MascotGenericFile (OpenMS)   VersionInfo::VersionDetails (OpenMS)   
MascotInfile (OpenMS)   VersionInfo (OpenMS)   
MascotRemoteQuery (OpenMS)   TOPPASVertex::VertexRoundPackage (OpenMS)   
MascotXMLFile (OpenMS)   
  W  
MascotXMLHandler (OpenMS::Internal)   
MassAnalyzer (OpenMS)   Weights (OpenMS::ims)   
MassAnalyzerVisualizer (OpenMS)   WeightWrapper (OpenMS)   
MassDecomposer (OpenMS::ims)   InclusionExclusionList::WindowDistance_ (OpenMS)   
MassDecomposition (OpenMS)   WindowMower (OpenMS)   
MassDecompositionAlgorithm (OpenMS)   WrongParameterType (OpenMS::Exception)   
MassExplainer (OpenMS)   
  X  
IMSAlphabet::MassSortingCriteria_ (OpenMS::ims)   
FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS)   XMassFile (OpenMS)   
MassTrace (OpenMS)   XMLFile (OpenMS::Internal)   
MassTraceDetection (OpenMS)   XMLHandler (OpenMS::Internal)   
FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS)   XMLValidator (OpenMS)   
Matrix (OpenMS)   XTandemInfile (OpenMS)   
MaxLikeliFitter1D (OpenMS)   XTandemInfileNote (OpenMS::Internal)   
mean_and_stddev (OpenSwath)   XTandemInfileXMLHandler (OpenMS::Internal)   
MetaDataBrowser (OpenMS)   XTandemXMLFile (OpenMS)   
MetaInfo (OpenMS)   
  Z  
MetaInfoDescription (OpenMS)   
MetaInfoDescriptionVisualizer (OpenMS)   ZhangSimilarityScore (OpenMS)   
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:20:58 using doxygen 1.8.5