#include <OpenMS/FORMAT/DTA2DFile.h>
Public Member Functions | |
PeakFileOptions & | getOptions () |
Mutable access to the options for loading/storing. More... | |
const PeakFileOptions & | getOptions () const |
Non-mutable access to the options for loading/storing. More... | |
template<typename MapType > | |
void | load (const String &filename, MapType &map) |
Loads a map from a DTA2D file. More... | |
template<typename MapType > | |
void | store (const String &filename, const MapType &map) const |
Stores a map in a DTA2D file. More... | |
template<typename MapType > | |
void | storeTIC (const String &filename, const MapType &map) const |
Stores the TIC of a map in a DTA2D file. More... | |
Constructors and Destructor | |
DTA2DFile () | |
Default constructor. More... | |
~DTA2DFile () | |
Destructor. More... | |
![]() | |
ProgressLogger () | |
Constructor. More... | |
~ProgressLogger () | |
Destructor. More... | |
void | setLogType (LogType type) const |
Sets the progress log that should be used. The default type is NONE! More... | |
LogType | getLogType () const |
Returns the type of progress log being used. More... | |
void | startProgress (SignedSize begin, SignedSize end, const String &label) const |
Initializes the progress display. More... | |
void | setProgress (SignedSize value) const |
Sets the current progress. More... | |
void | endProgress () const |
Ends the progress display. More... | |
Private Attributes | |
PeakFileOptions | options_ |
Additional Inherited Members | |
![]() | |
enum | LogType { CMD, GUI, NONE } |
Possible log types. More... | |
![]() | |
LogType | type_ |
SignedSize | begin_ |
SignedSize | end_ |
SignedSize | value_ |
QProgressDialog * | dlg_ |
StopWatch | stop_watch_ |
time_t | last_invoke_ |
![]() | |
static int | recursion_depth_ |
DTA2D File adapter.
File adapter for files with three tab/space-separated columns.
The default format is: retention time (seconds) , m/z , intensity.
If the first line starts with '#', a different order is defined by the the order of the keywords 'MIN' (retention time in minutes) or 'SEC' (retention time in seconds), 'MZ', and 'INT'.
Example: '#MZ MIN INT'
The peaks of one retention time have to be in subsequent lines.
DTA2DFile | ( | ) |
Default constructor.
~DTA2DFile | ( | ) |
Destructor.
PeakFileOptions& getOptions | ( | ) |
Mutable access to the options for loading/storing.
Referenced by FileHandler::loadExperiment(), and FileHandler::storeExperiment().
const PeakFileOptions& getOptions | ( | ) | const |
Non-mutable access to the options for loading/storing.
|
inline |
Loads a map from a DTA2D file.
map
has to be a MSExperiment or have the same interface.
Exception::FileNotFound | is thrown if the file could not be opened |
Exception::ParseError | is thrown if an error occurs during parsing |
References String::has(), String::hasPrefix(), String::split(), String::substr(), and String::trim().
Referenced by FileHandler::loadExperiment().
|
inline |
Stores a map in a DTA2D file.
map
has to be a MSExperiment or have the same interface.
Exception::UnableToCreateFile | is thrown if the file could not be created |
References OpenMS::precisionWrapper().
Referenced by FileHandler::storeExperiment().
|
inline |
Stores the TIC of a map in a DTA2D file.
map
has to be a MSExperiment or have the same interface.
Exception::UnableToCreateFile | is thrown if the file could not be created |
References OpenMS::precisionWrapper().
|
private |
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5 |