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PILISScoring.h
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31 // $Maintainer: Andreas Bertsch $
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34 
35 
36 #ifndef OPENMS_ANALYSIS_ID_PILISSCORING_H
37 #define OPENMS_ANALYSIS_ID_PILISSCORING_H
38 
43 
44 #include <vector>
45 
46 namespace OpenMS
47 {
72  class OPENMS_DLLAPI PILISScoring :
73  public DefaultParamHandler
74  {
75 
76 public:
77 
81  PILISScoring();
83 
85  PILISScoring(const PILISScoring & source);
86 
88  virtual ~PILISScoring();
90 
92  PILISScoring & operator=(const PILISScoring & source);
93 
97  void getScores(std::vector<PeptideIdentification> & ids);
99 
101  void getScore(PeptideIdentification & id);
103 
104 protected:
105 
107  void getFitParameter_(double & slope, double & intercept, const std::vector<double> & scores, double threshold);
108 
110  void getSurvivalFunction_(Map<UInt, double> & points, std::vector<DPosition<2> > & survival_function);
111 
113  void getScore_(PeptideIdentification & id, double global_slope, double global_intercept);
114 
115  };
116 }
117 
118 #endif
This class actually implements the E-value based scoring of PILIS.
Definition: PILISScoring.h:72
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:90
Map class based on the STL map (containing serveral convenience functions)
Definition: Map.h:50
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:63

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:19 using doxygen 1.8.5