36 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H
37 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H
447 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H
double getInitialTrTolerance()
Definition: SuperHirnParameters.h:420
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:440
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:248
double getMassTolPpm()
Definition: SuperHirnParameters.h:355
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:303
bool centroidDataModus_
Definition: SuperHirnParameters.h:169
double maxFeatureMZ_
Definition: SuperHirnParameters.h:153
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:298
double getToleranceMZ()
Definition: SuperHirnParameters.h:288
double getMinTR()
Definition: SuperHirnParameters.h:253
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:430
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:200
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:263
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:410
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:46
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:147
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:415
float intensityThreshold_
Definition: SuperHirnParameters.h:157
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:395
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:142
double getTrTol()
Definition: SuperHirnParameters.h:380
bool initIsotopeDist_
Definition: SuperHirnParameters.h:207
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:425
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:183
double massTolPpm_
Definition: SuperHirnParameters.h:186
static bool haveInstance_
Definition: SuperHirnParameters.h:143
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:203
double ms1TRResolution_
Definition: SuperHirnParameters.h:168
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:390
double minTR_
Definition: SuperHirnParameters.h:150
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:146
double getMassTolDa()
Definition: SuperHirnParameters.h:360
int minFeatureChrg_
Definition: SuperHirnParameters.h:154
double getMaxTR()
Definition: SuperHirnParameters.h:258
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:345
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:197
double mzTolPpm_
Definition: SuperHirnParameters.h:192
double initialTrTolerance_
Definition: SuperHirnParameters.h:201
double getIntensityCV()
Definition: SuperHirnParameters.h:350
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:204
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:217
double intensityFloor_
Definition: SuperHirnParameters.h:189
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:206
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:159
double getMinIntensity()
Definition: SuperHirnParameters.h:365
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:293
int minNbClusterMembers_
Definition: SuperHirnParameters.h:160
double getIntensityFloor()
Definition: SuperHirnParameters.h:370
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:148
double trTol_
Definition: SuperHirnParameters.h:193
int maxFeatureChrg_
Definition: SuperHirnParameters.h:155
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:268
float getIntensityThreshold()
Definition: SuperHirnParameters.h:283
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:273
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:195
double maxTR_
Definition: SuperHirnParameters.h:151
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:233
int centroidWindowWidth_
Definition: SuperHirnParameters.h:170
double minFeatureMZ_
Definition: SuperHirnParameters.h:152
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:238
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:198
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:278
double getMS1TRResolution()
Definition: SuperHirnParameters.h:330
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:145
Definition: FeatureFinderAlgorithmSHCtrl.h:55
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:222
bool centroidDataModus()
Definition: SuperHirnParameters.h:335
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:400
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:194
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:243
double toleranceMZ_
Definition: SuperHirnParameters.h:158
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:340
double getMzTolPpm()
Definition: SuperHirnParameters.h:375
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:385
double minIntensity_
Definition: SuperHirnParameters.h:188
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:202
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:405
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:162
double massTolDa_
Definition: SuperHirnParameters.h:187
double intensityCV_
Definition: SuperHirnParameters.h:184
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:435