public class PropertyManager extends java.lang.Object implements JmolPropertyManager
Modifier and Type | Field and Description |
---|---|
private static java.lang.String |
atomExpression |
private java.util.Map<java.lang.String,java.lang.Integer> |
map |
private static int |
PROP_ANIMATION_INFO |
private static int |
PROP_APPLET_INFO |
private static int |
PROP_ATOM_INFO |
private static int |
PROP_ATOM_LIST |
private static int |
PROP_AUXILIARY_INFO |
private static int |
PROP_BOND_INFO |
private static int |
PROP_BOUNDBOX_INFO |
private static int |
PROP_CENTER_INFO |
private static int |
PROP_CHAIN_INFO |
private static int |
PROP_CONSOLE_TEXT |
private static int |
PROP_COUNT |
private static int |
PROP_DATA_INFO |
private static int |
PROP_ERROR_MESSAGE |
private static int |
PROP_EVALUATE |
private static int |
PROP_EXTRACT_MODEL |
private static int |
PROP_FILE_INFO |
private static int |
PROP_FILECONTENTS |
private static int |
PROP_FILECONTENTS_PATH |
private static int |
PROP_FILEHEADER |
private static int |
PROP_FILENAME |
private static int |
PROP_IMAGE |
private static int |
PROP_ISOSURFACE_DATA |
private static int |
PROP_ISOSURFACE_INFO |
private static int |
PROP_JMOL_STATUS |
private static int |
PROP_JMOL_VIEWER |
private static int |
PROP_JSPECVIEW |
private static int |
PROP_LIGAND_INFO |
private static int |
PROP_MEASUREMENT_INFO |
private static int |
PROP_MENU |
private static int |
PROP_MESSAGE_QUEUE |
private static int |
PROP_MINIMIZATION_INFO |
private static int |
PROP_MODEL_INFO |
private static int |
PROP_MOLECULE_INFO |
private static int |
PROP_MOUSE_INFO |
private static int |
PROP_NMR_INFO |
private static int |
PROP_ORIENTATION_INFO |
private static int |
PROP_POINTGROUP_INFO |
private static int |
PROP_POLYMER_INFO |
private static int |
PROP_SCRIPT_QUEUE_INFO |
private static int |
PROP_SHAPE_INFO |
private static int |
PROP_STATE_INFO |
private static int |
PROP_TRANSFORM_INFO |
private static java.lang.String[] |
propertyTypes |
private static java.lang.String[] |
readableTypes |
(package private) Viewer |
viewer |
Constructor and Description |
---|
PropertyManager() |
Modifier and Type | Method and Description |
---|---|
private boolean |
addMolFile(SB mol,
BS bsAtoms,
BS bsBonds,
boolean asV3000,
boolean asChemDoodle,
Quaternion q) |
boolean |
checkPropertyParameter(java.lang.String name) |
java.lang.Object |
extractProperty(java.lang.Object property,
SV[] args,
int ptr) |
JmolList<java.util.Map<java.lang.String,java.lang.Object>> |
getAllAtomInfo(BS bs) |
JmolList<java.util.Map<java.lang.String,java.lang.Object>> |
getAllBondInfo(java.lang.Object bsOrArray) |
java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>> |
getAllChainInfo(BS bs) |
java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>> |
getAllPolymerInfo(BS bs) |
private java.util.Map<java.lang.String,java.lang.Object> |
getAtomInfoLong(int i) |
private void |
getAtomRecordMOL(ModelSet ms,
SB mol,
int n,
Atom a,
Quaternion q,
P3 pTemp,
P3 ptTemp,
boolean asV3000,
boolean asChemDoodle) |
private static void |
getAtomResidueInfo(SB info,
Atom atom) |
private java.lang.String |
getBasePairInfo(BS bs) |
private java.util.Map<java.lang.String,java.lang.Object> |
getBondInfo(int i) |
private void |
getBondRecordMOL(SB mol,
int n,
Bond b,
int[] atomMap,
boolean asV3000,
boolean asChemDoodle) |
private JmolList<java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>>> |
getChainInfo(int modelIndex,
BS bs) |
java.lang.String |
getChimeInfo(int tok,
BS bs) |
private java.lang.String |
getChimeInfoA(Atom[] atoms,
int tok,
BS bs) |
private static BS |
getCovalentBondsForAtoms(Bond[] bonds,
int bondCount,
BS bsAtoms) |
java.lang.String |
getDefaultPropertyParam(int propID) |
(package private) static java.lang.Object |
getFileInfo(java.lang.Object objHeader,
java.lang.String type) |
java.util.Map<java.lang.String,java.lang.Object> |
getLigandInfo(java.lang.Object atomExpression) |
java.lang.String |
getModelExtract(BS bs,
boolean doTransform,
boolean isModelKit,
java.lang.String type) |
java.lang.String |
getModelFileInfo(BS frames) |
java.util.Map<java.lang.String,java.lang.Object> |
getModelInfo(java.lang.Object atomExpression) |
private java.lang.Object |
getModelProperty(java.lang.String propertyName,
java.lang.Object propertyValue) |
JmolList<java.util.Map<java.lang.String,java.lang.Object>> |
getMoleculeInfo(java.lang.Object atomExpression) |
private static java.lang.String |
getParamType(int propID) |
java.lang.Object |
getProperty(java.lang.String returnType,
java.lang.String infoType,
java.lang.Object paramInfo) |
private java.lang.Object |
getPropertyAsObject(java.lang.String infoType,
java.lang.Object paramInfo,
java.lang.String returnType) |
private static java.lang.String |
getPropertyName(int propID) |
int |
getPropertyNumber(java.lang.String infoType) |
java.lang.Object |
getSymmetryInfo(BS bsAtoms,
java.lang.String xyz,
int op,
P3 pt,
P3 pt2,
java.lang.String id,
int type) |
private static boolean |
isReadableAsString(java.lang.String infoType) |
void |
setViewer(Viewer viewer) |
Viewer viewer
private java.util.Map<java.lang.String,java.lang.Integer> map
private static final java.lang.String atomExpression
private static final java.lang.String[] propertyTypes
private static final int PROP_APPLET_INFO
private static final int PROP_FILENAME
private static final int PROP_FILEHEADER
private static final int PROP_FILECONTENTS_PATH
private static final int PROP_FILECONTENTS
private static final int PROP_ANIMATION_INFO
private static final int PROP_MODEL_INFO
private static final int PROP_LIGAND_INFO
private static final int PROP_SHAPE_INFO
private static final int PROP_MEASUREMENT_INFO
private static final int PROP_CENTER_INFO
private static final int PROP_ORIENTATION_INFO
private static final int PROP_TRANSFORM_INFO
private static final int PROP_ATOM_LIST
private static final int PROP_ATOM_INFO
private static final int PROP_BOND_INFO
private static final int PROP_CHAIN_INFO
private static final int PROP_POLYMER_INFO
private static final int PROP_MOLECULE_INFO
private static final int PROP_STATE_INFO
private static final int PROP_EXTRACT_MODEL
private static final int PROP_JMOL_STATUS
private static final int PROP_JMOL_VIEWER
private static final int PROP_MESSAGE_QUEUE
private static final int PROP_AUXILIARY_INFO
private static final int PROP_BOUNDBOX_INFO
private static final int PROP_DATA_INFO
private static final int PROP_IMAGE
private static final int PROP_EVALUATE
private static final int PROP_MENU
private static final int PROP_MINIMIZATION_INFO
private static final int PROP_POINTGROUP_INFO
private static final int PROP_FILE_INFO
private static final int PROP_ERROR_MESSAGE
private static final int PROP_MOUSE_INFO
private static final int PROP_ISOSURFACE_INFO
private static final int PROP_ISOSURFACE_DATA
private static final int PROP_CONSOLE_TEXT
private static final int PROP_JSPECVIEW
private static final int PROP_SCRIPT_QUEUE_INFO
private static final int PROP_NMR_INFO
private static final int PROP_COUNT
private static final java.lang.String[] readableTypes
public void setViewer(Viewer viewer)
setViewer
in interface JmolPropertyManager
public int getPropertyNumber(java.lang.String infoType)
getPropertyNumber
in interface JmolPropertyManager
public java.lang.String getDefaultPropertyParam(int propID)
getDefaultPropertyParam
in interface JmolPropertyManager
public boolean checkPropertyParameter(java.lang.String name)
checkPropertyParameter
in interface JmolPropertyManager
public java.lang.Object getProperty(java.lang.String returnType, java.lang.String infoType, java.lang.Object paramInfo)
getProperty
in interface JmolPropertyManager
private java.lang.Object getModelProperty(java.lang.String propertyName, java.lang.Object propertyValue)
public java.lang.Object extractProperty(java.lang.Object property, SV[] args, int ptr)
extractProperty
in interface JmolPropertyManager
private static java.lang.String getPropertyName(int propID)
private static java.lang.String getParamType(int propID)
private static boolean isReadableAsString(java.lang.String infoType)
private java.lang.Object getPropertyAsObject(java.lang.String infoType, java.lang.Object paramInfo, java.lang.String returnType)
static java.lang.Object getFileInfo(java.lang.Object objHeader, java.lang.String type)
public JmolList<java.util.Map<java.lang.String,java.lang.Object>> getMoleculeInfo(java.lang.Object atomExpression)
public java.util.Map<java.lang.String,java.lang.Object> getModelInfo(java.lang.Object atomExpression)
getModelInfo
in interface JmolPropertyManager
public java.util.Map<java.lang.String,java.lang.Object> getLigandInfo(java.lang.Object atomExpression)
getLigandInfo
in interface JmolPropertyManager
public java.lang.Object getSymmetryInfo(BS bsAtoms, java.lang.String xyz, int op, P3 pt, P3 pt2, java.lang.String id, int type)
getSymmetryInfo
in interface JmolPropertyManager
public java.lang.String getModelExtract(BS bs, boolean doTransform, boolean isModelKit, java.lang.String type)
getModelExtract
in interface JmolPropertyManager
private boolean addMolFile(SB mol, BS bsAtoms, BS bsBonds, boolean asV3000, boolean asChemDoodle, Quaternion q)
private static BS getCovalentBondsForAtoms(Bond[] bonds, int bondCount, BS bsAtoms)
private void getAtomRecordMOL(ModelSet ms, SB mol, int n, Atom a, Quaternion q, P3 pTemp, P3 ptTemp, boolean asV3000, boolean asChemDoodle)
private void getBondRecordMOL(SB mol, int n, Bond b, int[] atomMap, boolean asV3000, boolean asChemDoodle)
public java.lang.String getChimeInfo(int tok, BS bs)
getChimeInfo
in interface JmolPropertyManager
public java.lang.String getModelFileInfo(BS frames)
getModelFileInfo
in interface JmolPropertyManager
public JmolList<java.util.Map<java.lang.String,java.lang.Object>> getAllAtomInfo(BS bs)
private java.util.Map<java.lang.String,java.lang.Object> getAtomInfoLong(int i)
public JmolList<java.util.Map<java.lang.String,java.lang.Object>> getAllBondInfo(java.lang.Object bsOrArray)
private java.util.Map<java.lang.String,java.lang.Object> getBondInfo(int i)
public java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>> getAllChainInfo(BS bs)
private JmolList<java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>>> getChainInfo(int modelIndex, BS bs)
public java.util.Map<java.lang.String,JmolList<java.util.Map<java.lang.String,java.lang.Object>>> getAllPolymerInfo(BS bs)
private java.lang.String getBasePairInfo(BS bs)