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QCCalculator

Calculates basic quality parameters from MS experiments and compiles data for subsequent QC into a qcML file.

pot. predecessor tools $ \longrightarrow $ QCCalculator $ \longrightarrow $ pot. successor tools
FeatureFinderCentroided QCMerger
XTandemAdapter QCExporter

The calculated quality parameters or data compiled as attachments for easy plotting input include file origin, spectra distribution, aquisition details, ion current stability ( & TIC ), id accuracy statistics and feature statistics. The MS experiments base name is used as name to the qcML element that is comprising all quality parameter values for the given run (including the given downstream analysis data).

Output is in qcML format (see parameter out) which can be viewed directly in a modern browser (chromium, firefox, safari).

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.2.0 Documentation generated on Sat Oct 14 2017 13:52:11 using doxygen 1.8.13