ProteoWizard
Classes | Namespaces | Macros | Functions | Variables
cv.hpp File Reference
#include <string>
#include <vector>
#include <map>
#include "pwiz/utility/misc/Export.hpp"

Go to the source code of this file.

Classes

struct  pwiz::cv::CV
 Information about an ontology or CV source and a short 'lookup' tag to refer to. More...
 
struct  pwiz::cv::CVTermInfo
 structure for holding CV term info More...
 

Namespaces

 pwiz
 
 pwiz::cv
 

Macros

#define _PSI_MS_OBO_
 
#define _UNIMOD_OBO_
 
#define _UNIT_OBO_
 

Functions

PWIZ_API_DECL const CV & pwiz::cv::cv (const std::string &prefix)
 returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO More...
 
PWIZ_API_DECL const CVTermInfo & pwiz::cv::cvTermInfo (CVID cvid)
 returns CV term info for the specified CVID More...
 
PWIZ_API_DECL const CVTermInfo & pwiz::cv::cvTermInfo (const char *id)
 returns CV term info for the specified id (accession number) More...
 
PWIZ_API_DECL const CVTermInfo & pwiz::cv::cvTermInfo (const std::string &id)
 
PWIZ_API_DECL bool pwiz::cv::cvIsA (CVID child, CVID parent)
 returns true iff child IsA parent in the CV More...
 
PWIZ_API_DECL const std::vector< CVID > & pwiz::cv::cvids ()
 returns vector of all valid CVIDs More...
 

Variables

 CVID_Unknown = -1
 
 MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies = 0
 Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies. More...
 
 MS_sample_number = 1000001
 sample number: A reference number relevant to the sample under study. More...
 
 MS_sample_name = 1000002
 sample name: A reference string relevant to the sample under study. More...
 
 MS_sample_state = 1000003
 sample state: The chemical phase of a pure sample, or the state of a mixed sample. More...
 
 MS_sample_mass = 1000004
 sample mass: Total mass of sample used. More...
 
 MS_sample_volume = 1000005
 sample volume: Total volume of solution used. More...
 
 MS_sample_concentration = 1000006
 sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used. More...
 
 MS_inlet_type = 1000007
 inlet type: The nature of the sample inlet. More...
 
 MS_ionization_type = 1000008
 ionization type: The method by which gas phase ions are generated from the sample. More...
 
 MS_ionization_mode_OBSOLETE = 1000009
 ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer. More...
 
 MS_analyzer_type_OBSOLETE = 1000010
 analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted. More...
 
 MS_mass_resolution = 1000011
 mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height. More...
 
 MS_resolution_measurement_method = 1000012
 resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate. More...
 
 MS_resolution_type_OBSOLETE = 1000013
 resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z. More...
 
 MS_accuracy = 1000014
 accuracy: Accuracy is the degree of conformity of a measured mass to its actual value. More...
 
 MS_scan_rate = 1000015
 scan rate: Rate in Th/sec for scanning analyzers. More...
 
 MS_scan_start_time = 1000016
 scan start time: The time that an analyzer started a scan, relative to the start of the MS run. More...
 
 MS_Scan_Function_OBSOLETE = 1000017
 Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum. More...
 
 MS_scan_direction = 1000018
 scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low). More...
 
 MS_scan_law = 1000019
 scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used. More...
 
 MS_scanning_method_OBSOLETE = 1000020
 scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment. More...
 
 MS_reflectron_state = 1000021
 reflectron state: Status of the reflectron, turned on or off. More...
 
 MS_TOF_Total_Path_Length = 1000022
 TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer. More...
 
 MS_isolation_width_OBSOLETE = 1000023
 isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion. More...
 
 MS_final_MS_exponent = 1000024
 final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10). More...
 
 MS_magnetic_field_strength = 1000025
 magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity. More...
 
 MS_B = MS_magnetic_field_strength
 B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity. More...
 
 MS_detector_type = 1000026
 detector type: Type of detector used in the mass spectrometer. More...
 
 MS_detector_acquisition_mode = 1000027
 detector acquisition mode: Method by which detector signal is acquired by the data system. More...
 
 MS_detector_resolution = 1000028
 detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height. More...
 
 MS_sampling_frequency = 1000029
 sampling frequency: The rate of signal sampling (measurement) with respect to time. More...
 
 MS_vendor_OBSOLETE = 1000030
 vendor: Name of instrument vendor. More...
 
 MS_instrument_model = 1000031
 instrument model: Instrument model name not including the vendor's name. More...
 
 MS_customization = 1000032
 customization: Free text description of a single customization made to the instrument; for several modifications, use several entries. More...
 
 MS_deisotoping = 1000033
 deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution. More...
 
 MS_charge_deconvolution = 1000034
 charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions. More...
 
 MS_peak_picking = 1000035
 peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. More...
 
 MS_scan_mode_OBSOLETE = 1000036
 scan mode: OBSOLETE. More...
 
 MS_polarity_OBSOLETE = 1000037
 polarity: Terms to describe the polarity setting of the instrument. More...
 
 MS_minute_OBSOLETE = 1000038
 minute: Acquisition time in minutes. More...
 
 MS_second_OBSOLETE = 1000039
 second: Acquisition time in seconds. More...
 
 MS_m_z = 1000040
 m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated. More...
 
 MS_mass_to_charge_ratio = MS_m_z
 mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated. More...
 
 MS_Th = MS_m_z
 Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated. More...
 
 MS_thomson = MS_m_z
 thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated. More...
 
 MS_charge_state = 1000041
 charge state: The charge state of the ion, single or multiple and positive or negatively charged. More...
 
 MS_z = MS_charge_state
 z (charge state): The charge state of the ion, single or multiple and positive or negatively charged. More...
 
 MS_peak_intensity = 1000042
 peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum. More...
 
 MS_intensity_unit = 1000043
 intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors. More...
 
 MS_dissociation_method = 1000044
 dissociation method: Fragmentation method used for dissociation or fragmentation. More...
 
 MS_collision_energy = 1000045
 collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion. More...
 
 MS_energy_unit_OBSOLETE = 1000046
 energy unit: Energy units are represented in either eV or Joules. More...
 
 MS_emulsion = 1000047
 emulsion: State if the sample is in emulsion form. More...
 
 MS_gaseous_sample_state = 1000048
 gaseous sample state: State if the sample is in gaseous form. More...
 
 MS_liquid_sample_state = 1000049
 liquid sample state: State if the sample is in liquid form. More...
 
 MS_solid_sample_state = 1000050
 solid sample state: State if the sample is in solid form. More...
 
 MS_solution = 1000051
 solution: State if the sample is in solution form. More...
 
 MS_suspension = 1000052
 suspension: State if the sample is in suspension form. More...
 
 MS_sample_batch = 1000053
 sample batch: Sample batch lot identifier. More...
 
 MS_chromatography_OBSOLETE = 1000054
 chromatography: Chromatographic conditions used to obtain the sample. More...
 
 MS_continuous_flow_fast_atom_bombardment = 1000055
 continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix. More...
 
 MS_CF_FAB = MS_continuous_flow_fast_atom_bombardment
 CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix. More...
 
 MS_direct_inlet = 1000056
 direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe. More...
 
 MS_electrospray_inlet = 1000057
 electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source. More...
 
 MS_flow_injection_analysis = 1000058
 flow injection analysis: Sample is directly injected or infused into the ionization source. More...
 
 MS_inductively_coupled_plasma = 1000059
 inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction. More...
 
 MS_infusion = 1000060
 infusion: The continuous flow of solution of a sample into the ionization source. More...
 
 MS_jet_separator = 1000061
 jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity. More...
 
 MS_membrane_separator = 1000062
 membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane. More...
 
 MS_moving_belt = 1000063
 moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules. More...
 
 MS_moving_wire = 1000064
 moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules. More...
 
 MS_open_split = 1000065
 open split: A division of flowing stream of liquid into two streams. More...
 
 MS_particle_beam = 1000066
 particle beam: Method for generating ions from a solution of an analyte. More...
 
 MS_reservoir = 1000067
 reservoir: A sample inlet method involving a reservoir. More...
 
 MS_septum = 1000068
 septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber. More...
 
 MS_thermospray_inlet = 1000069
 thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample. More...
 
 MS_atmospheric_pressure_chemical_ionization = 1000070
 atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization. More...
 
 MS_APCI = MS_atmospheric_pressure_chemical_ionization
 APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization. More...
 
 MS_chemical_ionization = 1000071
 chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization. More...
 
 MS_CI = MS_chemical_ionization
 CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization. More...
 
 MS_Electronic_Ionization_OBSOLETE = 1000072
 Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended. More...
 
 MS_EI_OBSOLETE = MS_Electronic_Ionization_OBSOLETE
 EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended. More...
 
 MS_electrospray_ionization = 1000073
 electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended. More...
 
 MS_ESI = MS_electrospray_ionization
 ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended. More...
 
 MS_fast_atom_bombardment_ionization = 1000074
 fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization. More...
 
 MS_FAB = MS_fast_atom_bombardment_ionization
 FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization. More...
 
 MS_matrix_assisted_laser_desorption_ionization = 1000075
 matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization. More...
 
 MS_MALDI = MS_matrix_assisted_laser_desorption_ionization
 MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization. More...
 
 MS_negative_ion_mode_OBSOLETE = 1000076
 negative ion mode: OBSOLETE. More...
 
 MS_positive_ion_mode_OBSOLETE = 1000077
 positive ion mode: OBSOLETE. More...
 
 MS_axial_ejection_linear_ion_trap = 1000078
 axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer. More...
 
 MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer = 1000079
 fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z. More...
 
 MS_FT_ICR = MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
 FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z. More...
 
 MS_magnetic_sector = 1000080
 magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z. More...
 
 MS_quadrupole = 1000081
 quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis. More...
 
 MS_quadrupole_ion_trap = 1000082
 quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials. More...
 
 MS_Paul_Ion_trap = MS_quadrupole_ion_trap
 Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials. More...
 
 MS_QIT = MS_quadrupole_ion_trap
 QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials. More...
 
 MS_Quistor = MS_quadrupole_ion_trap
 Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials. More...
 
 MS_radial_ejection_linear_ion_trap = 1000083
 radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer. More...
 
 MS_time_of_flight = 1000084
 time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy. More...
 
 MS_TOF = MS_time_of_flight
 TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy. More...
 
 MS_baseline = 1000085
 baseline: An attribute of resolution when recording the detector response in absence of the analyte. More...
 
 MS_full_width_at_half_maximum = 1000086
 full width at half-maximum: A measure of resolution represented as width of the peak at half peak height. More...
 
 MS_FWHM = MS_full_width_at_half_maximum
 FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height. More...
 
 MS_ten_percent_valley = 1000087
 ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height. More...
 
 MS_constant_OBSOLETE = 1000088
 constant: When resolution is constant with respect to m/z. More...
 
 MS_proportional_OBSOLETE = 1000089
 proportional: When resolution is proportional with respect to m/z. More...
 
 MS_mass_scan_OBSOLETE = 1000090
 mass scan: A variation of instrument where a selected mass is scanned. More...
 
 MS_selected_ion_detection_OBSOLETE = 1000091
 selected ion detection: Please see Single Ion Monitoring. More...
 
 MS_decreasing_m_z_scan = 1000092
 decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers. More...
 
 MS_increasing_m_z_scan = 1000093
 increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers. More...
 
 MS_exponential = 1000094
 exponential: The mass scan is done in exponential mode. More...
 
 MS_linear_OBSOLETE = 1000095
 linear: The mass scan is done in linear mode. More...
 
 MS_quadratic = 1000096
 quadratic: The mass scan is done in quadratic mode. More...
 
 MS_constant_neutral_mass_loss_OBSOLETE = 1000097
 constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum. More...
 
 MS_multiple_ion_monitoring_OBSOLETE = 1000098
 multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring. More...
 
 MS_multiple_reaction_monitoring_OBSOLETE = 1000099
 multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring. More...
 
 MS_MRM_OBSOLETE = MS_multiple_reaction_monitoring_OBSOLETE
 MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring. More...
 
 MS_precursor_ion_scan_OBSOLETE = 1000100
 precursor ion scan: The specific scan function or process that will record a precursor ion spectrum. More...
 
 MS_product_ion_scan_OBSOLETE = 1000101
 product ion scan: The specific scan function or process that records product ion spectrum. More...
 
 MS_single_ion_monitoring_OBSOLETE = 1000102
 single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum. More...
 
 MS_single_reaction_monitoring_OBSOLETE = 1000103
 single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring. More...
 
 MS_None____OBSOLETE = 1000104
 None ??: None. More...
 
 MS_reflectron_off = 1000105
 reflectron off: Reflectron is off. More...
 
 MS_reflectron_on = 1000106
 reflectron on: Reflectron is on. More...
 
 MS_channeltron = 1000107
 channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse. More...
 
 MS_Channeltron_Detector = MS_channeltron
 Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse. More...
 
 MS_conversion_dynode_electron_multiplier = 1000108
 conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected. More...
 
 MS_conversion_dynode_photomultiplier = 1000109
 conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier. More...
 
 MS_daly_detector = 1000110
 daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector. More...
 
 MS_Daly = MS_daly_detector
 Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector. More...
 
 MS_electron_multiplier_tube = 1000111
 electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. More...
 
 MS_EMT = MS_electron_multiplier_tube
 EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. More...
 
 MS_faraday_cup = 1000112
 faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device. More...
 
 MS_focal_plane_array = 1000113
 focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane. More...
 
 MS_microchannel_plate_detector = 1000114
 microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate. More...
 
 MS_multichannel_plate = MS_microchannel_plate_detector
 multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate. More...
 
 MS_multi_collector = 1000115
 multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers. More...
 
 MS_photomultiplier = 1000116
 photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected. More...
 
 MS_PMT = MS_photomultiplier
 PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected. More...
 
 MS_analog_digital_converter = 1000117
 analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers. More...
 
 MS_ADC = MS_analog_digital_converter
 ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers. More...
 
 MS_pulse_counting = 1000118
 pulse counting: Definition to do. More...
 
 MS_time_digital_converter = 1000119
 time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices. More...
 
 MS_TDC = MS_time_digital_converter
 TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices. More...
 
 MS_transient_recorder = 1000120
 transient recorder: A detector acquisition mode used for detecting transient signals. More...
 
 MS_SCIEX_instrument_model = 1000121
 SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as "Applied Biosystems|MDS SCIEX". More...
 
 MS_Bruker_Daltonics_instrument_model = 1000122
 Bruker Daltonics instrument model: Bruker Daltonics' instrument model. More...
 
 MS_IonSpec_instrument_model = 1000123
 IonSpec instrument model: IonSpec corporation instrument model. More...
 
 MS_Shimadzu_instrument_model = 1000124
 Shimadzu instrument model: Shimadzu corporation instrument model. More...
 
 MS_Thermo_Finnigan_instrument_model = 1000125
 Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model. More...
 
 MS_Waters_instrument_model = 1000126
 Waters instrument model: Waters Corporation instrument model. More...
 
 MS_centroid_spectrum = 1000127
 centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset. More...
 
 MS_Discrete_Mass_Spectrum = MS_centroid_spectrum
 Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset. More...
 
 MS_profile_spectrum = 1000128
 profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis. More...
 
 MS_continuous_mass_spectrum = MS_profile_spectrum
 continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis. More...
 
 MS_Continuum_Mass_Spectrum = MS_profile_spectrum
 Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis. More...
 
 MS_negative_scan = 1000129
 negative scan: Polarity of the scan is negative. More...
 
 MS_positive_scan = 1000130
 positive scan: Polarity of the scan is positive. More...
 
 MS_number_of_detector_counts = 1000131
 number of detector counts: The number of counted events observed in one or a group of elements of a detector. More...
 
 MS_percent_of_base_peak = 1000132
 percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity. More...
 
 MS_collision_induced_dissociation = 1000133
 collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended. More...
 
 MS_CID = MS_collision_induced_dissociation
 CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended. More...
 
 MS_CAD = MS_collision_induced_dissociation
 CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended. More...
 
 MS_collisionally_activated_dissociation = MS_collision_induced_dissociation
 collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended. More...
 
 MS_plasma_desorption = 1000134
 plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization. More...
 
 MS_PD = MS_plasma_desorption
 PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization. More...
 
 MS_post_source_decay = 1000135
 post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra. More...
 
 MS_PSD = MS_post_source_decay
 PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra. More...
 
 MS_surface_induced_dissociation = 1000136
 surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface. More...
 
 MS_SID = MS_surface_induced_dissociation
 SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface. More...
 
 MS_electron_volt_OBSOLETE = 1000137
 electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J. More...
 
 MS_eV_OBSOLETE = MS_electron_volt_OBSOLETE
 eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J. More...
 
 MS_normalized_collision_energy = 1000138
 normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions. More...
 
 MS_4000_QTRAP = 1000139
 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS. More...
 
 MS_4700_Proteomics_Analyzer = 1000140
 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS. More...
 
 MS_apex_IV = 1000141
 apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. More...
 
 MS_apex_Q = 1000142
 apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. More...
 
 MS_API_150EX = 1000143
 API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS. More...
 
 MS_API_150EX_Prep = 1000144
 API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS. More...
 
 MS_API_2000 = 1000145
 API 2000: Applied Biosystems/MDS SCIEX API 2000 MS. More...
 
 MS_API_3000 = 1000146
 API 3000: Applied Biosystems/MDS SCIEX API 3000 MS. More...
 
 MS_API_4000 = 1000147
 API 4000: Applied Biosystems/MDS SCIEX API 4000 MS. More...
 
 MS_autoflex_II = 1000148
 autoflex II: Bruker Daltonics' autoflex II: MALDI TOF. More...
 
 MS_autoflex_TOF_TOF = 1000149
 autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF. More...
 
 MS_Auto_Spec_Ultima_NT = 1000150
 Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS. More...
 
 MS_BioTOF_II = 1000151
 BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF. More...
 
 MS_BioTOF_Q = 1000152
 BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF. More...
 
 MS_DELTA_plusAdvantage = 1000153
 DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS. More...
 
 MS_DELTAplusXP = 1000154
 DELTAplusXP: ThermoFinnigan DELTAplusXP MS. More...
 
 MS_ELEMENT2_OBSOLETE = 1000155
 ELEMENT2: ThermoFinnigan ELEMENT2 MS. More...
 
 MS_esquire_4000 = 1000156
 esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI. More...
 
 MS_esquire_6000 = 1000157
 esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI. More...
 
 MS_explorer = 1000158
 explorer: IonSpec Explorer MS. More...
 
 MS_GCT = 1000159
 GCT: Waters oa-ToF based GCT. More...
 
 MS_HCT = 1000160
 HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI. More...
 
 MS_HCTplus = 1000161
 HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI. More...
 
 MS_HiRes_ESI = 1000162
 HiRes ESI: IonSpec HiResESI MS. More...
 
 MS_HiRes_MALDI = 1000163
 HiRes MALDI: IonSpec HiResMALDI MS. More...
 
 MS_IsoPrime = 1000164
 IsoPrime: Waters IsoPrime MS. More...
 
 MS_IsoProbe = 1000165
 IsoProbe: Waters IsoProbe MS. More...
 
 MS_IsoProbe_T = 1000166
 IsoProbe T: Waters IsoProbe T MS. More...
 
 MS_LCQ_Advantage = 1000167
 LCQ Advantage: ThermoFinnigan LCQ Advantage MS. More...
 
 MS_LCQ_Classic = 1000168
 LCQ Classic: ThermoFinnigan LCQ Classic MS. More...
 
 MS_LCQ_Deca_XP_Plus = 1000169
 LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS. More...
 
 MS_M_LDI_L = 1000170
 M L: Waters oa-ToF based MALDI L. More...
 
 MS_M_LDI_LR = 1000171
 M LR: Waters oa-ToF based MALDI LR. More...
 
 MS_MAT253 = 1000172
 MAT253: ThermoFinnigan MAT253 MS. More...
 
 MS_MAT900XP = 1000173
 MAT900XP: ThermoFinnigan MAT900XP MS. More...
 
 MS_MAT900XP_Trap = 1000174
 MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS. More...
 
 MS_MAT95XP = 1000175
 MAT95XP: ThermoFinnigan MAT95XP MS. More...
 
 MS_MAT95XP_Trap = 1000176
 MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS. More...
 
 MS_microflex = 1000177
 microflex: Bruker Daltonics' microflex: MALDI TOF. More...
 
 MS_microTOF_LC = 1000178
 microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI. More...
 
 MS_neptune = 1000179
 neptune: ThermoFinnigan NEPTUNE MS. More...
 
 MS_NG_5400 = 1000180
 NG-5400: Waters NG-5400 MS. More...
 
 MS_OMEGA = 1000181
 OMEGA: IonSpec OMEGA MS. More...
 
 MS_OMEGA_2001 = 1000182
 OMEGA-2001: IonSpec OMEGA-2001 MS. More...
 
 MS_OmniFlex = 1000183
 OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF. More...
 
 MS_Platform_ICP = 1000184
 Platform ICP: Waters Platform ICP MS. More...
 
 MS_PolarisQ = 1000185
 PolarisQ: ThermoFinnigan PolarisQ MS. More...
 
 MS_proteomics_solution_1 = 1000186
 proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS. More...
 
 MS_Q_TRAP = 1000187
 Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS. More...
 
 MS_Q_Tof_micro = 1000188
 Q-Tof micro: Waters oa-ToF based Q-Tof micro. More...
 
 MS_Q_Tof_ultima = 1000189
 Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima. More...
 
 MS_QSTAR = 1000190
 QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS. More...
 
 MS_quattro_micro = 1000191
 quattro micro: Waters oa-ToF based micro. More...
 
 MS_Quattro_UItima = 1000192
 Quattro UItima: Waters oa-ToF based Ultima. More...
 
 MS_Surveyor_MSQ = 1000193
 Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS. More...
 
 MS_SymBiot_I = 1000194
 SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS. More...
 
 MS_SymBiot_XVI = 1000195
 SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS. More...
 
 MS_TEMPUS_TOF = 1000196
 TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS. More...
 
 MS_TRACE_DSQ = 1000197
 TRACE DSQ: ThermoFinnigan TRACE DSQ MS. More...
 
 MS_TRITON = 1000198
 TRITON: ThermoFinnigan TRITON MS. More...
 
 MS_TSQ_Quantum = 1000199
 TSQ Quantum: ThermoFinnigan TSQ Quantum MS. More...
 
 MS_ultima = 1000200
 ultima: IonSpec Ultima MS. More...
 
 MS_ultraflex = 1000201
 ultraflex: Bruker Daltonics' ultraflex: MALDI TOF. More...
 
 MS_ultraflex_TOF_TOF = 1000202
 ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF. More...
 
 MS_Voyager_DE_PRO = 1000203
 Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS. More...
 
 MS_Voyager_DE_STR = 1000204
 Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS. More...
 
 MS_selected_ion_monitoring = 1000205
 selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum. More...
 
 MS_Multiple_Ion_Monitoring = MS_selected_ion_monitoring
 Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum. More...
 
 MS_SIM = MS_selected_ion_monitoring
 SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum. More...
 
 MS_selected_reaction_monitoring = 1000206
 selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space. More...
 
 MS_SRM = MS_selected_reaction_monitoring
 SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space. More...
 
 MS_accurate_mass_OBSOLETE = 1000207
 accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition. More...
 
 MS_average_mass_OBSOLETE = 1000208
 average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance. More...
 
 MS_appearance_energy_OBSOLETE = 1000209
 appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended. More...
 
 MS_AE_OBSOLETE = MS_appearance_energy_OBSOLETE
 AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended. More...
 
 MS_base_peak = 1000210
 base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures. More...
 
 MS_BP = MS_base_peak
 BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures. More...
 
 MS_OBSOLETE_charge_number_OBSOLETE = 1000211
 OBSOLETE charge number: The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state. More...
 
 MS_z_OBSOLETE = MS_OBSOLETE_charge_number_OBSOLETE
 z (OBSOLETE charge number): The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state. More...
 
 MS_dalton_OBSOLETE = 1000212
 dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg. More...
 
 MS_Da_OBSOLETE = MS_dalton_OBSOLETE
 Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg. More...
 
 MS_electron_affinity_OBSOLETE = 1000213
 electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy. More...
 
 MS_EA_OBSOLETE = MS_electron_affinity_OBSOLETE
 EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy. More...
 
 MS_electron_energy_obsolete_OBSOLETE = 1000214
 electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization. More...
 
 MS_exact_mass_OBSOLETE = 1000215
 exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom. More...
 
 MS_field_free_region = 1000216
 field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields. More...
 
 MS_FFR = MS_field_free_region
 FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields. More...
 
 MS_ionization_cross_section_OBSOLETE = 1000217
 ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule. More...
 
 MS_ionization_efficiency_OBSOLETE = 1000218
 ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used. More...
 
 MS_ionization_energy_OBSOLETE = 1000219
 ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion. More...
 
 MS_IE_OBSOLETE = MS_ionization_energy_OBSOLETE
 IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion. More...
 
 MS_isotope_dilution_mass_spectrometry_OBSOLETE = 1000220
 isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard. More...
 
 MS_IDMS_OBSOLETE = MS_isotope_dilution_mass_spectrometry_OBSOLETE
 IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard. More...
 
 MS_magnetic_deflection = 1000221
 magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer. More...
 
 MS_mass_defect_OBSOLETE = 1000222
 mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom. More...
 
 MS_mass_number_OBSOLETE = 1000223
 mass number: The sum of the protons and neutrons in an atom, molecule or ion. More...
 
 MS_molecular_mass_OBSOLETE = 1000224
 molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules). More...
 
 MS_monoisotopic_mass_OBSOLETE = 1000225
 monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element. More...
 
 MS_molecular_beam_mass_spectrometry_OBSOLETE = 1000226
 molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam. More...
 
 MS_MBMS_OBSOLETE = MS_molecular_beam_mass_spectrometry_OBSOLETE
 MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam. More...
 
 MS_multiphoton_ionization = 1000227
 multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed. More...
 
 MS_MPI = MS_multiphoton_ionization
 MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed. More...
 
 MS_nitrogen_rule_OBSOLETE = 1000228
 nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms. More...
 
 MS_nominal_mass_OBSOLETE = 1000229
 nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value. More...
 
 MS_odd_electron_rule_OBSOLETE = 1000230
 odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions. More...
 
 MS_peak = 1000231
 peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably. More...
 
 MS_peak_intensity_OBSOLETE = 1000232
 peak intensity: The height or area of a peak in a mass spectrum. More...
 
 MS_proton_affinity_OBSOLETE = 1000233
 proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states. More...
 
 MS_PA_OBSOLETE = MS_proton_affinity_OBSOLETE
 PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states. More...
 
 MS_mass_resolving_power_OBSOLETE = 1000234
 mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported. More...
 
 MS_total_ion_current_chromatogram = 1000235
 total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time. More...
 
 MS_TIC_chromatogram = MS_total_ion_current_chromatogram
 TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time. More...
 
 MS_transmission = 1000236
 transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region. More...
 
 MS_unified_atomic_mass_unit_OBSOLETE = 1000237
 unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg. More...
 
 MS_u_OBSOLETE = MS_unified_atomic_mass_unit_OBSOLETE
 u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg. More...
 
 MS_accelerator_mass_spectrometry_OBSOLETE = 1000238
 accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy. More...
 
 MS_AMS_OBSOLETE = MS_accelerator_mass_spectrometry_OBSOLETE
 AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy. More...
 
 MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization = 1000239
 atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer. More...
 
 MS_AP_MALDI = MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
 AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer. More...
 
 MS_atmospheric_pressure_ionization = 1000240
 atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure. More...
 
 MS_API = MS_atmospheric_pressure_ionization
 API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure. More...
 
 MS_Atmostpheric_Pressure_Photoionization_OBSOLETE = 1000241
 Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization. More...
 
 MS_APPI_OBSOLETE = MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
 APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization. More...
 
 MS_blackbody_infrared_radiative_dissociation = 1000242
 blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation. More...
 
 MS_BIRD = MS_blackbody_infrared_radiative_dissociation
 BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation. More...
 
 MS_charge_remote_fragmentation_OBSOLETE = 1000243
 charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site. More...
 
 MS_CRF_OBSOLETE = MS_charge_remote_fragmentation_OBSOLETE
 CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site. More...
 
 MS_consecutive_reaction_monitoring_OBSOLETE_1000244 = 1000244
 consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored. More...
 
 MS_CRM_OBSOLETE = MS_consecutive_reaction_monitoring_OBSOLETE_1000244
 CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored. More...
 
 MS_charge_stripping = 1000245
 charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion. More...
 
 MS_CS = MS_charge_stripping
 CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion. More...
 
 MS_delayed_extraction = 1000246
 delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer. More...
 
 MS_DE = MS_delayed_extraction
 DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer. More...
 
 MS_desorption_ionization = 1000247
 desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample. More...
 
 MS_DI = MS_desorption_ionization
 DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample. More...
 
 MS_direct_insertion_probe = 1000248
 direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization. More...
 
 MS_DIP = MS_direct_insertion_probe
 DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization. More...
 
 MS_direct_liquid_introduction = 1000249
 direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization. More...
 
 MS_DLI = MS_direct_liquid_introduction
 DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization. More...
 
 MS_electron_capture_dissociation = 1000250
 electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments. More...
 
 MS_ECD = MS_electron_capture_dissociation
 ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments. More...
 
 MS_even_electron_ion_OBSOLETE = 1000251
 even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state. More...
 
 MS_EE_OBSOLETE = MS_even_electron_ion_OBSOLETE
 EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state. More...
 
 MS_electron_induced_excitation_in_organics_OBSOLETE = 1000252
 electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion. More...
 
 MS_EIEIO_OBSOLETE = MS_electron_induced_excitation_in_organics_OBSOLETE
 EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion. More...
 
 MS_electron_multiplier = 1000253
 electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons. More...
 
 MS_EM = MS_electron_multiplier
 EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons. More...
 
 MS_electrostatic_energy_analyzer = 1000254
 electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time. More...
 
 MS_ESA = MS_electrostatic_energy_analyzer
 ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time. More...
 
 MS_flowing_afterglow = 1000255
 flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa. More...
 
 MS_FA = MS_flowing_afterglow
 FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa. More...
 
 MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE = 1000256
 high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion. More...
 
 MS_FAIMS_OBSOLETE = MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE
 FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion. More...
 
 MS_field_desorption = 1000257
 field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization. More...
 
 MS_FD = MS_field_desorption
 FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization. More...
 
 MS_field_ionization = 1000258
 field ionization: The removal of electrons from any species by interaction with a high electric field. More...
 
 MS_FI = MS_field_ionization
 FI (field ionization): The removal of electrons from any species by interaction with a high electric field. More...
 
 MS_glow_discharge_ionization = 1000259
 glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas. More...
 
 MS_GD_MS = MS_glow_discharge_ionization
 GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas. More...
 
 MS_ion_kinetic_energy_spectrometry_OBSOLETE = 1000260
 ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge. More...
 
 MS_IKES_OBSOLETE = MS_ion_kinetic_energy_spectrometry_OBSOLETE
 IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge. More...
 
 MS_ion_mobility_spectrometry_OBSOLETE = 1000261
 ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field. More...
 
 MS_IMS_OBSOLETE = MS_ion_mobility_spectrometry_OBSOLETE
 IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field. More...
 
 MS_infrared_multiphoton_dissociation = 1000262
 infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons. More...
 
 MS_IRMPD = MS_infrared_multiphoton_dissociation
 IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons. More...
 
 MS_isotope_ratio_mass_spectrometry_OBSOLETE = 1000263
 isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer. More...
 
 MS_IRMS_OBSOLETE = MS_isotope_ratio_mass_spectrometry_OBSOLETE
 IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer. More...
 
 MS_ion_trap = 1000264
 ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination. More...
 
 MS_IT = MS_ion_trap
 IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination. More...
 
 MS_kinetic_energy_release_distribution_OBSOLETE = 1000265
 kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction. More...
 
 MS_KERD_OBSOLETE = MS_kinetic_energy_release_distribution_OBSOLETE
 KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction. More...
 
 MS_Laser_Desorption_OBSOLETE = 1000266
 Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules. More...
 
 MS_Laser_Ionization_MERGE_OBSOLETE = MS_Laser_Desorption_OBSOLETE
 Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules. More...
 
 MS_LD_OBSOLETE = MS_Laser_Desorption_OBSOLETE
 LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules. More...
 
 MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE = 1000267
 mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process. More...
 
 MS_MIKES_OBSOLETE = MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE
 MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process. More...
 
 MS_mass_spectrometry_OBSOLETE = 1000268
 mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments. More...
 
 MS_MS_OBSOLETE = MS_mass_spectrometry_OBSOLETE
 MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments. More...
 
 MS_mass_spectrometry_mass_spectrometry_OBSOLETE = 1000269
 mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions. More...
 
 MS_MS_MS_OBSOLETE = MS_mass_spectrometry_mass_spectrometry_OBSOLETE
 MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions. More...
 
 MS_multiple_stage_mass_spectrometry_OBSOLETE = 1000270
 multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions. More...
 
 MS_MSn_OBSOLETE = MS_multiple_stage_mass_spectrometry_OBSOLETE
 MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions. More...
 
 MS_Negative_Ion_chemical_ionization = 1000271
 Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions. More...
 
 MS_NICI = MS_Negative_Ion_chemical_ionization
 NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions. More...
 
 MS_neutralization_reionization_mass_spectrometry = 1000272
 neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species. More...
 
 MS_NRMS = MS_neutralization_reionization_mass_spectrometry
 NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species. More...
 
 MS_photoionization = 1000273
 photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended. More...
 
 MS_PI = MS_photoionization
 PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended. More...
 
 MS_pyrolysis_mass_spectrometry = 1000274
 pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source. More...
 
 MS_PyMS = MS_pyrolysis_mass_spectrometry
 PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source. More...
 
 MS_collision_quadrupole = 1000275
 collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation. More...
 
 MS_q = MS_collision_quadrupole
 q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation. More...
 
 MS_resonance_enhanced_multiphoton_ionization = 1000276
 resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species. More...
 
 MS_REMPI = MS_resonance_enhanced_multiphoton_ionization
 REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species. More...
 
 MS_residual_gas_analyzer_OBSOLETE = 1000277
 residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber. More...
 
 MS_RGA_OBSOLETE = MS_residual_gas_analyzer_OBSOLETE
 RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber. More...
 
 MS_surface_enhanced_laser_desorption_ionization = 1000278
 surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization. More...
 
 MS_SELDI = MS_surface_enhanced_laser_desorption_ionization
 SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization. More...
 
 MS_surface_enhanced_neat_desorption = 1000279
 surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface. More...
 
 MS_SEND = MS_surface_enhanced_neat_desorption
 SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface. More...
 
 MS_suface_ionization_OBSOLETE = 1000280
 suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature. More...
 
 MS_SI_OBSOLETE = MS_suface_ionization_OBSOLETE
 SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature. More...
 
 MS_selected_ion_flow_tube = 1000281
 selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions. More...
 
 MS_SIFT = MS_selected_ion_flow_tube
 SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions. More...
 
 MS_sustained_off_resonance_irradiation = 1000282
 sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time. More...
 
 MS_SORI = MS_sustained_off_resonance_irradiation
 SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time. More...
 
 MS_Spark_Source_Mass_Spectrometry_OBSOLETE = 1000283
 Spark Source Mass Spectrometry: Mass spectrometry using spark ionization. More...
 
 MS_SSMS_OBSOLETE = MS_Spark_Source_Mass_Spectrometry_OBSOLETE
 SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization. More...
 
 MS_stored_waveform_inverse_fourier_transform = 1000284
 stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments. More...
 
 MS_SWIFT = MS_stored_waveform_inverse_fourier_transform
 SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments. More...
 
 MS_total_ion_current = 1000285
 total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum. More...
 
 MS_TIC = MS_total_ion_current
 TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum. More...
 
 MS_time_lag_focusing = 1000286
 time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse. More...
 
 MS_TLF = MS_time_lag_focusing
 TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse. More...
 
 MS_time_of_flight_mass_spectrometer_OBSOLETE = 1000287
 time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy. More...
 
 MS_TOF_MS_OBSOLETE = MS_time_of_flight_mass_spectrometer_OBSOLETE
 TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy. More...
 
 MS_cyclotron = 1000288
 cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles. More...
 
 MS_double_focusing_mass_spectrometer_OBSOLETE = 1000289
 double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam. More...
 
 MS_hybrid_mass_spectrometer_OBSOLETE = 1000290
 hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry. More...
 
 MS_linear_ion_trap = 1000291
 linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap. More...
 
 MS_mass_spectrograph_obsolete_OBSOLETE = 1000292
 mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate. More...
 
 MS_mass_spectrometer_OBSOLETE = 1000293
 mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions. More...
 
 MS_mass_spectrum = 1000294
 mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z). More...
 
 MS_mattauch_herzog_geometry_OBSOLETE = 1000295
 mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians. More...
 
 MS_nier_johnson_geometry_OBSOLETE = 1000296
 nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians. More...
 
 MS_paul_ion_trap_OBSOLETE = 1000297
 paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected. More...
 
 MS_prolate_traochoidal_mass_spectrometer_OBSOLETE = 1000298
 prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path. More...
 
 MS_quistor_OBSOLETE = 1000299
 quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term. More...
 
 MS_reflectron = 1000300
 reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time. More...
 
 MS_sector_mass_spectrometer_OBSOLETE = 1000301
 sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection. More...
 
 MS_tandem_mass_spectrometer_OBSOLETE = 1000302
 tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry. More...
 
 MS_transmission_quadrupole_mass_spectrometer_OBSOLETE = 1000303
 transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis. More...
 
 MS_accelerating_voltage = 1000304
 accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer. More...
 
 MS_cyclotron_motion_OBSOLETE = 1000305
 cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB. More...
 
 MS_dynamic_mass_spectrometry_OBSOLETE = 1000306
 dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time. More...
 
 MS_einzel_lens = 1000307
 einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle. More...
 
 MS_electric_field_strength = 1000308
 electric field strength: The magnitude of the force per unit charge at a given point in space. More...
 
 MS_first_stability_region = 1000309
 first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole. More...
 
 MS_fringing_field = 1000310
 fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element. More...
 
 MS_kinetic_energy_analyzer = 1000311
 kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field. More...
 
 MS_mass_limit_OBSOLETE = 1000312
 mass limit: The m/z value above which ions cannot be detected in a mass spectrometer. More...
 
 MS_scan_m_z_range__OBSOLETE = 1000313
 scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions. More...
 
 MS_mass_selective_axial_ejection_OBSOLETE = 1000314
 mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap. More...
 
 MS_mass_selective_instability_OBSOLETE = 1000315
 mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap. More...
 
 MS_mathieu_stability_diagram_OBSOLETE = 1000316
 mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer. More...
 
 MS_orthogonal_extraction_OBSOLETE = 1000317
 orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage. More...
 
 MS_resonance_ion_ejection_OBSOLETE = 1000318
 resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it. More...
 
 MS_space_charge_effect = 1000319
 space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time. More...
 
 MS_static_field = 1000320
 static field: An electric or magnetic field that does not change in time. More...
 
 MS_2E_Mass_Spectrum_OBSOLETE = 1000321
 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained. More...
 
 MS_charge_inversion_mass_spectrum = 1000322
 charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z. More...
 
 MS_constant_neutral_loss_scan_OBSOLETE = 1000323
 constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement. More...
 
 MS_constant_neutral_gain_scan_OBSOLETE = 1000324
 constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment. More...
 
 MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE = MS_constant_neutral_gain_scan_OBSOLETE
 Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment. More...
 
 MS_constant_neutral_gain_spectrum = 1000325
 constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell. More...
 
 MS_constant_neutral_mass_gain_spectrum = MS_constant_neutral_gain_spectrum
 constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell. More...
 
 MS_constant_neutral_loss_spectrum = 1000326
 constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum. More...
 
 MS_constant_neutral_mass_loss_spectrum = MS_constant_neutral_loss_spectrum
 constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum. More...
 
 MS_consecutive_reaction_monitoring_OBSOLETE_1000327 = 1000327
 consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored. More...
 
 MS_e_2_mass_spectrum = 1000328
 e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions. More...
 
 MS_linked_scan_OBSOLETE = 1000329
 linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum. More...
 
 MS_linked_scan_at_constant_b_e_OBSOLETE = 1000330
 linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. More...
 
 MS_Linked_Scan_at_Constant_E2_V_OBSOLETE = 1000331
 Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors. More...
 
 MS_Linked_Scan_at_Constant_B2_E_OBSOLETE = 1000332
 Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended. More...
 
 MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE = 1000333
 Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan. More...
 
 MS_MS_MS_in_Time_OBSOLETE = 1000334
 MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time. More...
 
 MS_MS_MS_in_Space_OBSOLETE = 1000335
 MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition. More...
 
 MS_neutral_loss = 1000336
 neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type). More...
 
 MS_nth_generation_product_ion_OBSOLETE = 1000337
 nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated. More...
 
 MS_nth_generation_product_ion_scan_OBSOLETE = 1000338
 nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions. More...
 
 MS_nth_generation_product_ion_spectrum_OBSOLETE = 1000339
 nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions. More...
 
 MS_precursor_ion_OBSOLETE = 1000340
 precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated. More...
 
 MS_precursor_ion_spectrum = 1000341
 precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z. More...
 
 MS_product_ion_OBSOLETE = 1000342
 product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated. More...
 
 MS_product_ion_spectrum_OBSOLETE = 1000343
 product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions. More...
 
 MS_progeny_ion_OBSOLETE = 1000344
 progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+. More...
 
 MS_Progeny_Fragment_Ion_OBSOLETE = MS_progeny_ion_OBSOLETE
 Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+. More...
 
 MS_array_detector = 1000345
 array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector. More...
 
 MS_conversion_dynode = 1000346
 conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected. More...
 
 MS_dynode = 1000347
 dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode. More...
 
 MS_focal_plane_collector = 1000348
 focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane. More...
 
 MS_ion_to_photon_detector = 1000349
 ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier. More...
 
 MS_point_collector = 1000350
 point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially. More...
 
 MS_postacceleration_detector = 1000351
 postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector. More...
 
 MS_secondary_electron_OBSOLETE = 1000352
 secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go. More...
 
 MS_adduct_ion_OBSOLETE = 1000353
 adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules. More...
 
 MS_aromatic_ion_OBSOLETE = 1000354
 aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure. More...
 
 MS_analog_ion_OBSOLETE = 1000355
 analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+. More...
 
 MS_anti_aromatic_ion_OBSOLETE = 1000356
 anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic. More...
 
 MS_cationized_molecule_OBSOLETE = 1000357
 cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used. More...
 
 MS_cluster_ion_OBSOLETE = 1000358
 cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-. More...
 
 MS_Conventional_ion_OBSOLETE = 1000359
 Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion. More...
 
 MS_diagnostic_ion_OBSOLETE = 1000360
 diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives. More...
 
 MS_dimeric_ion_OBSOLETE = 1000361
 dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+. More...
 
 MS_distonic_ion_OBSOLETE = 1000362
 distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion. More...
 
 MS_enium_ion_OBSOLETE = 1000363
 enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions. More...
 
 MS_fragment_ion_OBSOLETE = 1000364
 fragment ion: A product ion that results from the dissociation of a precursor ion. More...
 
 MS_ion__OBSOLETE = 1000365
 ion?: An atomic or molecular species having a net positive or negative electric charge. More...
 
 MS_Isotopologue_ion_OBSOLETE = 1000366
 Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue. More...
 
 MS_Isotopomeric_ion_OBSOLETE = 1000367
 Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer. More...
 
 MS_metastable_ion_OBSOLETE = 1000368
 metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection. More...
 
 MS_molecular_ion_OBSOLETE = 1000369
 molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion. More...
 
 MS_negative_ion_OBSOLETE = 1000370
 negative ion: An atomic or molecular species having a net negative electric charge. More...
 
 MS_non_classical_ion_OBSOLETE = 1000371
 non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions. More...
 
 MS_onium_ion_OBSOLETE = 1000372
 onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+. More...
 
 MS_principal_ion_OBSOLETE = 1000373
 principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions. More...
 
 MS_positive_ion_OBSOLETE = 1000374
 positive ion: An atomic or molecular species having a net positive electric charge. More...
 
 MS_protonated_molecule_OBSOLETE = 1000375
 protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended. More...
 
 MS_radical_ion_OBSOLETE = 1000376
 radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation. More...
 
 MS_reference_ion_OBSOLETE = 1000377
 reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion. More...
 
 MS_stable_ion_OBSOLETE = 1000378
 stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer. More...
 
 MS_unstable_ion_OBSOLETE = 1000379
 unstable ion: An ion with sufficient energy to dissociate within the ion source. More...
 
 MS_adiabatic_ionization = 1000380
 adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state. More...
 
 MS_associative_ionization = 1000381
 associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron. More...
 
 MS_atmospheric_pressure_photoionization = 1000382
 atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization. More...
 
 MS_autodetachment = 1000383
 autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source. More...
 
 MS_autoionization = 1000384
 autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source. More...
 
 MS_charge_exchange_ionization = 1000385
 charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization. More...
 
 MS_chemi_ionization = 1000386
 chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization. More...
 
 MS_desorption_ionization_on_silicon = 1000387
 desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface. More...
 
 MS_dissociative_ionization = 1000388
 dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion. More...
 
 MS_electron_ionization = 1000389
 electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended. More...
 
 MS_ion_desolvation_OBSOLETE = 1000390
 ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules. More...
 
 MS_ion_pair_formation_OBSOLETE = 1000391
 ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products. More...
 
 MS_ionization_efficiency = 1000392
 ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used. More...
 
 MS_laser_desorption_ionization = 1000393
 laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material. More...
 
 MS_liquid_secondary_ionization = 1000395
 liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization. More...
 
 MS_membrane_inlet = 1000396
 membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source. More...
 
 MS_microelectrospray = 1000397
 microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray. More...
 
 MS_nanoelectrospray = 1000398
 nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray. More...
 
 MS_nanospray = MS_nanoelectrospray
 nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray. More...
 
 MS_penning_ionization = 1000399
 penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited. More...
 
 MS_plasma_desorption_ionization = 1000400
 plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization. More...
 
 MS_pre_ionization_state_OBSOLETE = 1000401
 pre-ionization state: An electronic state capable of undergoing auto-Ionization. More...
 
 MS_secondary_ionization = 1000402
 secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions. More...
 
 MS_soft_ionization = 1000403
 soft ionization: The formation of gas-phase ions without extensive fragmentation. More...
 
 MS_spark_ionization = 1000404
 spark ionization: The formation of ions from a solid material by an intermittent electrical discharge. More...
 
 MS_surface_assisted_laser_desorption_ionization = 1000405
 surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization. More...
 
 MS_surface_ionization = 1000406
 surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature. More...
 
 MS_thermal_ionization = 1000407
 thermal ionization: The ionization of a neutral species through contact with a high temperature surface. More...
 
 MS_vertical_ionization = 1000408
 vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state. More...
 
 MS_association_reaction_OBSOLETE = 1000409
 association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion. More...
 
 MS_alpha_cleavage_OBSOLETE = 1000410
 alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds. More...
 
 MS_beta_cleavage_OBSOLETE = 1000411
 beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds. More...
 
 MS_buffer_gas = 1000412
 buffer gas: An inert gas used for collisional deactivation of internally excited ions. More...
 
 MS_charge_induced_fragmentation_OBSOLETE = 1000413
 charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation. More...
 
 MS_charge_inversion_reaction_OBSOLETE = 1000414
 charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion. More...
 
 MS_charge_permutation_reaction_OBSOLETE = 1000415
 charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion. More...
 
 MS_charge_stripping_reaction_OBSOLETE = 1000416
 charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion. More...
 
 MS_charge_transfer_reaction_OBSOLETE = 1000417
 charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species. More...
 
 MS_collisional_excitation_OBSOLETE = 1000418
 collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion. More...
 
 MS_collision_gas = 1000419
 collision gas: An inert gas used for collisional excitation. The term target gas is not recommended. More...
 
 MS_heterolytic_cleavage_OBSOLETE = 1000420
 heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis. More...
 
 MS_high_energy_collision_OBSOLETE = 1000421
 high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV. More...
 
 MS_beam_type_collision_induced_dissociation = 1000422
 beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell. More...
 
 MS_HCD = MS_beam_type_collision_induced_dissociation
 HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell. More...
 
 MS_homolytic_cleavage_OBSOLETE = 1000423
 homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis. More...
 
 MS_hydrogen_deuterium_exchange_OBSOLETE = 1000424
 hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer. More...
 
 MS_ion_energy_loss_spectrum_OBSOLETE = 1000425
 ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species. More...
 
 MS_ionizing_collision_OBSOLETE = 1000426
 ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral. More...
 
 MS_ion_molecule_reaction_OBSOLETE = 1000427
 ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule. More...
 
 MS_ion_neutral_complex_OBSOLETE = 1000428
 ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions. More...
 
 MS_ion_neutral_species_reaction_OBSOLETE = 1000429
 ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants. More...
 
 MS_ion_neutral_species_exchange_reaction_OBSOLETE = 1000430
 ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product. More...
 
 MS_kinetic_method_OBSOLETE = 1000431
 kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account. More...
 
 MS_low_energy_collisions_OBSOLETE = 1000432
 low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower. More...
 
 MS_low_energy_collision_induced_dissociation = 1000433
 low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative. More...
 
 MS_McLafferty_Rearrangement_OBSOLETE = 1000434
 McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied. More...
 
 MS_photodissociation = 1000435
 photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons. More...
 
 MS_multiphoton_dissociation = MS_photodissociation
 multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons. More...
 
 MS_MPD = MS_photodissociation
 MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons. More...
 
 MS_partial_charge_transfer_reaction_OBSOLETE = 1000436
 partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral. More...
 
 MS_ion_reaction_OBSOLETE = 1000437
 ion reaction: Chemical transformation involving an ion. More...
 
 MS_superelastic_collision_OBSOLETE = 1000438
 superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners. More...
 
 MS_surface_induced_reaction_OBSOLETE = 1000439
 surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion. More...
 
 MS_unimolecular_dissociation_OBSOLETE = 1000440
 unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion. More...
 
 MS_scan = 1000441
 scan: Function or process of the mass spectrometer where it records a spectrum. More...
 
 MS_spectrum = 1000442
 spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis. More...
 
 MS_mass_analyzer_type = 1000443
 mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio. More...
 
 MS_m_z_Separation_Method_OBSOLETE = 1000444
 m/z Separation Method: Mass/charge separation Method. More...
 
 MS_sequential_m_z_separation_method_OBSOLETE = 1000445
 sequential m/z separation method: Sequential m/z separation method. More...
 
 MS_fast_ion_bombardment = 1000446
 fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample. More...
 
 MS_FIB = MS_fast_ion_bombardment
 FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample. More...
 
 MS_LTQ = 1000447
 LTQ: Finnigan LTQ MS. More...
 
 MS_LTQ_FT = 1000448
 LTQ FT: Finnigan LTQ FT MS. More...
 
 MS_LTQ_Orbitrap = 1000449
 LTQ Orbitrap: Finnigan LTQ Orbitrap MS. More...
 
 MS_LXQ = 1000450
 LXQ: Finnigan LXQ MS. More...
 
 MS_mass_analyzer = 1000451
 mass analyzer: Terms used to describe the Analyzer. More...
 
 MS_analyzer = MS_mass_analyzer
 analyzer (mass analyzer): Terms used to describe the Analyzer. More...
 
 MS_data_transformation = 1000452
 data transformation: Terms used to describe types of data processing. More...
 
 MS_data_processing = MS_data_transformation
 data processing (data transformation): Terms used to describe types of data processing. More...
 
 MS_detector = 1000453
 detector: The device that detects ions. More...
 
 MS_instrument_additional_description_OBSOLETE = 1000454
 instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5. More...
 
 MS_ion_selection_attribute = 1000455
 ion selection attribute: Ion selection properties that are associated with a value. More...
 
 MS_precursor_activation = 1000456
 precursor activation: Terms to describe the precursor activation. More...
 
 MS_activation = MS_precursor_activation
 activation (precursor activation): Terms to describe the precursor activation. More...
 
 MS_sample = 1000457
 sample: Terms to describe the sample. More...
 
 MS_source = 1000458
 source: Terms to describe the source. More...
 
 MS_spectrum_instrument_description_OBSOLETE = 1000459
 spectrum instrument description: Terms used to describe the spectrum. More...
 
 MS_unit_OBSOLETE = 1000460
 unit: Terms to describe units. More...
 
 MS_additional_description_OBSOLETE = 1000461
 additional description: Terms to describe Additional. More...
 
 MS_ion_optics = 1000462
 ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions. More...
 
 MS_instrument = 1000463
 instrument: Description of the instrument or the mass spectrometer. More...
 
 MS_instrument_configuration = MS_instrument
 instrument configuration (instrument): Description of the instrument or the mass spectrometer. More...
 
 MS_mass_unit_OBSOLETE = 1000464
 mass unit: A unit of measurement for mass. More...
 
 MS_scan_polarity = 1000465
 scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating. More...
 
 MS_alternating_OBSOLETE = 1000466
 alternating: Alternating. More...
 
 MS_1200_series_LC_MSD_SL = 1000467
 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2. More...
 
 MS_6110_Quadrupole_LC_MS = 1000468
 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications. More...
 
 MS_6120_Quadrupole_LC_MS = 1000469
 6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition. More...
 
 MS_6130_Quadrupole_LC_MS = 1000470
 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition. More...
 
 MS_6140_Quadrupole_LC_MS = 1000471
 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition. More...
 
 MS_6210_Time_of_Flight_LC_MS = 1000472
 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources. More...
 
 MS_6310_Ion_Trap_LC_MS = 1000473
 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges. More...
 
 MS_6320_Ion_Trap_LC_MS = 1000474
 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges. More...
 
 MS_6330_Ion_Trap_LC_MS = 1000475
 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges. More...
 
 MS_6340_Ion_Trap_LC_MS = 1000476
 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges. More...
 
 MS_6410_Triple_Quadrupole_LC_MS = 1000477
 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration. More...
 
 MS_6410_Triple_Quad_LC_MS = MS_6410_Triple_Quadrupole_LC_MS
 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration. More...
 
 MS_1200_series_LC_MSD_VL = 1000478
 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor. More...
 
 MS_purgatory_OBSOLETE = 1000479
 purgatory: Terms that will likely become obsolete unless there are wails of dissent. More...
 
 MS_mass_analyzer_attribute = 1000480
 mass analyzer attribute: Analyzer properties that are associated with a value. More...
 
 MS_detector_attribute = 1000481
 detector attribute: Detector attribute recognized as a value. More...
 
 MS_source_attribute = 1000482
 source attribute: Property of a source device that need a value. More...
 
 MS_Thermo_Fisher_Scientific_instrument_model = 1000483
 Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific. More...
 
 MS_orbitrap = 1000484
 orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer. More...
 
 MS_nanospray_inlet = 1000485
 nanospray inlet: Nanospray Inlet. More...
 
 MS_source_potential = 1000486
 source potential: Potential difference at the MS source in volts. More...
 
 MS_ion_optics_attribute = 1000487
 ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry. More...
 
 MS_Hitachi_instrument_model = 1000488
 Hitachi instrument model: Hitachi instrument model. More...
 
 MS_Varian_instrument_model = 1000489
 Varian instrument model: Varian instrument model. More...
 
 MS_Agilent_instrument_model = 1000490
 Agilent instrument model: Agilent instrument model. More...
 
 MS_Dionex_instrument_model = 1000491
 Dionex instrument model: Dionex instrument model. More...
 
 MS_Thermo_Electron_instrument_model = 1000492
 Thermo Electron instrument model: Thermo Electron Corporation instrument model. More...
 
 MS_Finnigan_MAT_instrument_model = 1000493
 Finnigan MAT instrument model: Finnigan MAT instrument model. More...
 
 MS_Thermo_Scientific_instrument_model = 1000494
 Thermo Scientific instrument model: Thermo Scientific instrument model. More...
 
 MS_Applied_Biosystems_instrument_model = 1000495
 Applied Biosystems instrument model: Applied Biosystems instrument model. More...
 
 MS_ABI = MS_Applied_Biosystems_instrument_model
 ABI (Applied Biosystems instrument model): Applied Biosystems instrument model. More...
 
 MS_instrument_attribute = 1000496
 instrument attribute: Instrument properties that are associated with a value. More...
 
 MS_zoom_scan = 1000497
 zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate. More...
 
 MS_enhanced_resolution_scan = MS_zoom_scan
 enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate. More...
 
 MS_full_scan_OBSOLETE = 1000498
 full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range. More...
 
 MS_spectrum_attribute = 1000499
 spectrum attribute: Spectrum properties that are associated with a value. More...
 
 MS_scan_window_upper_limit = 1000500
 scan window upper limit: The lower m/z bound of a mass spectrometer scan window. More...
 
 MS_scan_window_lower_limit = 1000501
 scan window lower limit: The upper m/z bound of a mass spectrometer scan window. More...
 
 MS_dwell_time = 1000502
 dwell time: The time spent gathering data across a peak. More...
 
 MS_scan_attribute = 1000503
 scan attribute: Scan properties that are associated with a value. More...
 
 MS_base_peak_m_z = 1000504
 base peak m/z: M/z value of the signal of highest intensity in the mass spectrum. More...
 
 MS_base_peak_intensity = 1000505
 base peak intensity: The intensity of the greatest peak in the mass spectrum. More...
 
 MS_ion_role_OBSOLETE = 1000506
 ion role: Ion Role. More...
 
 MS_ion_attribute_OBSOLETE = 1000507
 ion attribute: Ion properties that are associated with a value. More...
 
 MS_ion_chemical_type_OBSOLETE = 1000508
 ion chemical type: Ion Type. More...
 
 MS_activation_energy = 1000509
 activation energy: Activation Energy. More...
 
 MS_precursor_activation_attribute = 1000510
 precursor activation attribute: Precursor Activation Attribute. More...
 
 MS_ms_level = 1000511
 ms level: Stages of ms achieved in a multi stage mass spectrometry experiment. More...
 
 MS_filter_string = 1000512
 filter string: A string unique to Thermo instrument describing instrument settings for the scan. More...
 
 MS_binary_data_array = 1000513
 binary data array: A data array of values. More...
 
 MS_m_z_array = 1000514
 m/z array: A data array of m/z values. More...
 
 MS_intensity_array = 1000515
 intensity array: A data array of intensity values. More...
 
 MS_charge_array = 1000516
 charge array: A data array of charge values. More...
 
 MS_signal_to_noise_array = 1000517
 signal to noise array: A data array of signal-to-noise values. More...
 
 MS_binary_data_type = 1000518
 binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float. More...
 
 MS_32_bit_integer = 1000519
 32-bit integer: Signed 32-bit little-endian integer. More...
 
 MS_16_bit_float_OBSOLETE = 1000520
 16-bit float: Signed 16-bit float. More...
 
 MS_32_bit_float = 1000521
 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754. More...
 
 MS_64_bit_integer = 1000522
 64-bit integer: Signed 64-bit little-endian integer. More...
 
 MS_64_bit_float = 1000523
 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754. More...
 
 MS_data_file_content = 1000524
 data file content: Describes the data content on the file. More...
 
 MS_spectrum_representation = 1000525
 spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks. More...
 
 MS_Waters_raw_format = 1000526
 Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition. More...
 
 MS_highest_observed_m_z = 1000527
 highest observed m/z: Highest m/z value observed in the m/z array. More...
 
 MS_lowest_observed_m_z = 1000528
 lowest observed m/z: Lowest m/z value observed in the m/z array. More...
 
 MS_instrument_serial_number = 1000529
 instrument serial number: Serial Number of the instrument. More...
 
 MS_file_format_conversion = 1000530
 file format conversion: Conversion of one file format to another. More...
 
 MS_software = 1000531
 software: Software related to the recording or transformation of spectra. More...
 
 MS_Xcalibur = 1000532
 Xcalibur: Thermo Finnigan software for data acquisition and analysis. More...
 
 MS_Bioworks = 1000533
 Bioworks: Thermo Finnigan software for data analysis of peptides and proteins. More...
 
 MS_MassLynx = 1000534
 MassLynx: Micromass software for data acquisition and analysis. More...
 
 MS_FlexAnalysis = 1000535
 FlexAnalysis: Bruker software for data analysis. More...
 
 MS_Data_Explorer = 1000536
 Data Explorer: Applied Biosystems software for data acquisition and analysis. More...
 
 MS_4700_Explorer = 1000537
 4700 Explorer: Applied Biosystems software for data acquisition and analysis. More...
 
 MS_massWolf = 1000538
 massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology. More...
 
 MS_wolf = MS_massWolf
 wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology. More...
 
 MS_Voyager_Biospectrometry_Workstation_System = 1000539
 Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system. More...
 
 MS_FlexControl = 1000540
 FlexControl: Bruker software for data acquisition. More...
 
 MS_ReAdW = 1000541
 ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced "readraw". More...
 
 MS_MzStar = 1000542
 MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program. More...
 
 MS_data_processing_action = 1000543
 data processing action: Data processing attribute used to describe the type of data processing performed on the data file. More...
 
 MS_Conversion_to_mzML = 1000544
 Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format. More...
 
 MS_Conversion_to_mzXML = 1000545
 Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format. More...
 
 MS_Conversion_to_mzData = 1000546
 Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format. More...
 
 MS_object_attribute = 1000547
 object attribute: Object Attribute. More...
 
 MS_sample_attribute = 1000548
 sample attribute: Sample properties that are associated with a value. More...
 
 MS_selection_window_attribute = 1000549
 selection window attribute: Selection window properties that are associated with a value. More...
 
 MS_time_unit_OBSOLETE = 1000550
 time unit: Time Unit. More...
 
 MS_Analyst = 1000551
 Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition. More...
 
 MS_maldi_spot_identifier_OBSOLETE = 1000552
 maldi spot identifier: Maldi Spot Identifier. More...
 
 MS_Trapper = 1000553
 Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology. More...
 
 MS_LCQ_Deca = 1000554
 LCQ Deca: ThermoFinnigan LCQ Deca. More...
 
 MS_LTQ_Orbitrap_Discovery = 1000555
 LTQ Orbitrap Discovery: LTQ Orbitrap Discovery. More...
 
 MS_LTQ_Orbitrap_XL = 1000556
 LTQ Orbitrap XL: LTQ Orbitrap XL. More...
 
 MS_LTQ_FT_Ultra = 1000557
 LTQ FT Ultra: LTQ FT Ultra. More...
 
 MS_GC_Quantum = 1000558
 GC Quantum: GC Quantum. More...
 
 MS_spectrum_type = 1000559
 spectrum type: Spectrum type. More...
 
 MS_mass_spectrometer_file_format = 1000560
 mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format. More...
 
 MS_data_file_checksum_type = 1000561
 data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data. More...
 
 MS_ABI_WIFF_format = 1000562
 ABI WIFF format: Applied Biosystems WIFF file format. More...
 
 MS_Thermo_RAW_format = 1000563
 Thermo RAW format: Thermo Scientific RAW file format. More...
 
 MS_PSI_mzData_format = 1000564
 PSI mzData format: Proteomics Standards Inititative mzData file format. More...
 
 MS_Micromass_PKL_format = 1000565
 Micromass PKL format: Micromass PKL file format. More...
 
 MS_ISB_mzXML_format = 1000566
 ISB mzXML format: Institute of Systems Biology mzXML file format. More...
 
 MS_Bruker_Agilent_YEP_format = 1000567
 Bruker/Agilent YEP format: Bruker/Agilent YEP file format. More...
 
 MS_MD5 = 1000568
 MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files. More...
 
 MS_SHA_1 = 1000569
 SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity. More...
 
 MS_spectra_combination = 1000570
 spectra combination: Method used to combine the mass spectra. More...
 
 MS_sum_of_spectra = 1000571
 sum of spectra: Spectra Sum. More...
 
 MS_binary_data_compression_type = 1000572
 binary data compression type: Compression Type. More...
 
 MS_median_of_spectra = 1000573
 median of spectra: Spectra is combined by calculating the median of the spectra. More...
 
 MS_zlib_compression = 1000574
 zlib compression: Zlib. More...
 
 MS_mean_of_spectra = 1000575
 mean of spectra: Spectra is combined by calculating the mean of the spectra. More...
 
 MS_no_compression = 1000576
 no compression: No Compression. More...
 
 MS_raw_data_file = 1000577
 raw data file: Describes the type of file and its content. More...
 
 MS_source_file = MS_raw_data_file
 source file (raw data file): Describes the type of file and its content. More...
 
 MS_LCQ_Fleet = 1000578
 LCQ Fleet: LCQ Fleet. More...
 
 MS_MS1_spectrum = 1000579
 MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment. More...
 
 MS_full_spectrum = MS_MS1_spectrum
 full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment. More...
 
 MS_Q1_spectrum = MS_MS1_spectrum
 Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment. More...
 
 MS_Q3_spectrum = MS_MS1_spectrum
 Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment. More...
 
 MS_Single_Stage_Mass_Spectrometry = MS_MS1_spectrum
 Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment. More...
 
 MS_MSn_spectrum = 1000580
 MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n. More...
 
 MS_multiple_stage_mass_spectrometry_spectrum = MS_MSn_spectrum
 multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n. More...
 
 MS_nth_generation_product_ion_spectrum = MS_MSn_spectrum
 nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n. More...
 
 MS_product_ion_spectrum = MS_MSn_spectrum
 product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n. More...
 
 MS_CRM_spectrum = 1000581
 CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored. More...
 
 MS_SIM_spectrum = 1000582
 SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring). More...
 
 MS_MIM_spectrum = MS_SIM_spectrum
 MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring). More...
 
 MS_multiple_ion_monitoring_spectrum = MS_SIM_spectrum
 multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring). More...
 
 MS_selected_ion_monitoring_spectrum = MS_SIM_spectrum
 selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring). More...
 
 MS_SRM_spectrum = 1000583
 SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space. More...
 
 MS_MRM_spectrum = MS_SRM_spectrum
 MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space. More...
 
 MS_multiple_reaction_monitoring_spectrum = MS_SRM_spectrum
 multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space. More...
 
 MS_selected_reaction_monitoring_spectrum = MS_SRM_spectrum
 selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space. More...
 
 MS_mzML_format = 1000584
 mzML format: Proteomics Standards Inititative mzML file format. More...
 
 MS_contact_attribute = 1000585
 contact attribute: Details about a person or organization to contact in case of concern or discussion about the file. More...
 
 MS_contact_name = 1000586
 contact name: Name of the contact person or organization. More...
 
 MS_contact_address = 1000587
 contact address: Postal address of the contact person or organization. More...
 
 MS_contact_URL = 1000588
 contact URL: Uniform Resource Locator related to the contact person or organization. More...
 
 MS_contact_email = 1000589
 contact email: Email address of the contact person or organization. More...
 
 MS_contact_affiliation = 1000590
 contact affiliation: Home institution of the contact person. More...
 
 MS_MzWiff = 1000591
 MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program. More...
 
 MS_smoothing = 1000592
 smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process. More...
 
 MS_baseline_reduction = 1000593
 baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values. More...
 
 MS_low_intensity_data_point_removal = 1000594
 low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal. More...
 
 MS_thresholding = MS_low_intensity_data_point_removal
 thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal. More...
 
 MS_time_array = 1000595
 time array: A data array of relative time offset values from a reference time. More...
 
 MS_measurement_method = 1000596
 measurement method: An attribute of resolution when recording the detector response in absence of the analyte. More...
 
 MS_ion_optics_type = 1000597
 ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer. More...
 
 MS_electron_transfer_dissociation = 1000598
 electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them. More...
 
 MS_ETD = MS_electron_transfer_dissociation
 ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them. More...
 
 MS_pulsed_q_dissociation = 1000599
 pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected. More...
 
 MS_PQD = MS_pulsed_q_dissociation
 PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected. More...
 
 MS_Proteios = 1000600
 Proteios: Database application and analysis platform for proteomics. More...
 
 MS_ProteinLynx_Global_Server = 1000601
 ProteinLynx Global Server: Waters software for data analysis. More...
 
 MS_Shimadzu_MALDI_TOF_instrument_model = 1000602
 Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model. More...
 
 MS_Shimadzu_Scientific_Instruments_instrument_model = 1000603
 Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model. More...
 
 MS_LCMS_IT_TOF = 1000604
 LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS. More...
 
 MS_LCMS_2010EV = 1000605
 LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS. More...
 
 MS_LCMS_2010A = 1000606
 LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS. More...
 
 MS_AXIMA_CFR_MALDI_TOF = 1000607
 AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS. More...
 
 MS_AXIMA_QIT = 1000608
 AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS. More...
 
 MS_AXIMA_CFR_plus = 1000609
 AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS. More...
 
 MS_AXIMA_Performance_MALDI_TOF_TOF = 1000610
 AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS. More...
 
 MS_AXIMA_Confidence_MALDI_TOF = 1000611
 AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS. More...
 
 MS_AXIMA_Assurance_Linear_MALDI_TOF = 1000612
 AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS. More...
 
 MS_DTA_format = 1000613
 DTA format: SEQUEST DTA file format. More...
 
 MS_ProteinLynx_Global_Server_mass_spectrum_XML_format = 1000614
 ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server. More...
 
 MS_ProteoWizard_software = 1000615
 ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb. More...
 
 MS_pwiz = MS_ProteoWizard_software
 pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb. More...
 
 MS_preset_scan_configuration = 1000616
 preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo "scan event", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time. More...
 
 MS_wavelength_array = 1000617
 wavelength array: A data array of electromagnetic radiation wavelength values. More...
 
 MS_highest_observed_wavelength = 1000618
 highest observed wavelength: Highest wavelength observed in an EMR spectrum. More...
 
 MS_lowest_observed_wavelength = 1000619
 lowest observed wavelength: Lowest wavelength observed in an EMR spectrum. More...
 
 MS_PDA_spectrum_OBSOLETE = 1000620
 PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum). More...
 
 MS_photodiode_array_detector = 1000621
 photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light. More...
 
 MS_PDA = MS_photodiode_array_detector
 PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light. More...
 
 MS_Surveyor_PDA = 1000622
 Surveyor PDA: Surveyor PDA. More...
 
 MS_Accela_PDA = 1000623
 Accela PDA: Accela PDA. More...
 
 MS_inductive_detector = 1000624
 inductive detector: Inductive detector. More...
 
 MS_image_current_detector = MS_inductive_detector
 image current detector (inductive detector): Inductive detector. More...
 
 MS_chromatogram = 1000625
 chromatogram: The representation of detector response versus time. More...
 
 MS_chromatogram_type = 1000626
 chromatogram type: Broad category or type of a chromatogram. More...
 
 MS_selected_ion_current_chromatogram = 1000627
 selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point. More...
 
 MS_SIC_chromatogram = MS_selected_ion_current_chromatogram
 SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point. More...
 
 MS_basepeak_chromatogram = 1000628
 basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point. More...
 
 MS_low_intensity_threshold = 1000629
 low intensity threshold: Threshold below which some action is taken. More...
 
 MS_data_processing_parameter = 1000630
 data processing parameter: Data processing parameter used in the data processing performed on the data file. More...
 
 MS_high_intensity_threshold = 1000631
 high intensity threshold: Threshold above which some action is taken. More...
 
 MS_Q_Tof_Premier = 1000632
 Q-Tof Premier: Waters oa-ToF based Q-Tof Premier. More...
 
 MS_possible_charge_state = 1000633
 possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty. More...
 
 MS_DSQ = 1000634
 DSQ: ThermoFinnigan DSQ GC-MS. More...
 
 MS_ITQ_700 = 1000635
 ITQ 700: Thermo Scientific ITQ 700 GC-MS. More...
 
 MS_ITQ_900 = 1000636
 ITQ 900: Thermo Scientific ITQ 900 GC-MS. More...
 
 MS_ITQ_1100 = 1000637
 ITQ 1100: Thermo Scientific ITQ 1100 GC-MS. More...
 
 MS_LTQ_XL_ETD = 1000638
 LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD. More...
 
 MS_LTQ_Orbitrap_XL_ETD = 1000639
 LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD. More...
 
 MS_DFS = 1000640
 DFS: Thermo Scientific DFS HR GC-MS. More...
 
 MS_DSQ_II = 1000641
 DSQ II: Thermo Scientific DSQ II GC-MS. More...
 
 MS_MALDI_LTQ_XL = 1000642
 MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS. More...
 
 MS_MALDI_LTQ_Orbitrap = 1000643
 MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS. More...
 
 MS_TSQ_Quantum_Access = 1000644
 TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS. More...
 
 MS_Element_XR = 1000645
 Element XR: Thermo Scientific Element XR HR-ICP-MS. More...
 
 MS_Element_2 = 1000646
 Element 2: Thermo Scientific Element 2 HR-ICP-MS. More...
 
 MS_Element_GD = 1000647
 Element GD: Thermo Scientific Element GD Glow Discharge MS. More...
 
 MS_GC_IsoLink = 1000648
 GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS. More...
 
 MS_Exactive = 1000649
 Exactive: Thermo Scientific Exactive MS. More...
 
 MS_Proteome_Discoverer = 1000650
 Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins. More...
 
 MS_3200_QTRAP = 1000651
 3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200. More...
 
 MS_4800_Plus_MALDI_TOF_TOF = 1000652
 4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer. More...
 
 MS_API_3200 = 1000653
 API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS. More...
 
 MS_API_5000 = 1000654
 API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS. More...
 
 MS_QSTAR_Elite = 1000655
 QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite. More...
 
 MS_QSTAR_Pulsar = 1000656
 QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar. More...
 
 MS_QSTAR_XL = 1000657
 QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL. More...
 
 MS_4800_Proteomics_Analyzer = 1000658
 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer. More...
 
 MS_4000_Series_Explorer_Software = 1000659
 4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis. More...
 
 MS_GPS_Explorer = 1000661
 GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis. More...
 
 MS_LightSight_Software = 1000662
 LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification. More...
 
 MS_ProteinPilot_Software = 1000663
 ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant. More...
 
 MS_TissueView_Software = 1000664
 TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging. More...
 
 MS_MarkerView_Software = 1000665
 MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling. More...
 
 MS_MRMPilot_Software = 1000666
 MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development. More...
 
 MS_BioAnalyst = 1000667
 BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration. More...
 
 MS_Pro_ID = 1000668
 Pro ID: Applied Biosystems|MDS SCIEX software for protein identification. More...
 
 MS_Pro_ICAT = 1000669
 Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT. More...
 
 MS_Pro_Quant = 1000670
 Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ. More...
 
 MS_Pro_BLAST = 1000671
 Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification. More...
 
 MS_Cliquid = 1000672
 Cliquid: SCIEX Cliquid software for data analysis and quantitation. More...
 
 MS_MIDAS_Workflow_Designer = 1000673
 MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development. More...
 
 MS_MultiQuant = 1000674
 MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation. More...
 
 MS_6220_Time_of_Flight_LC_MS = 1000675
 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources. More...
 
 MS_6510_Quadrupole_Time_of_Flight_LC_MS = 1000676
 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources. More...
 
 MS_6520_Quadrupole_Time_of_Flight_LC_MS = 1000677
 6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources. More...
 
 MS_MassHunter_Data_Acquisition = 1000678
 MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments. More...
 
 MS_MassHunter_Easy_Access = 1000679
 MassHunter Easy Access: Software for open access data acquisition. More...
 
 MS_MassHunter_Qualitative_Analysis = 1000680
 MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments. More...
 
 MS_MassHunter_Quantitative_Analysis = 1000681
 MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data. More...
 
 MS_MassHunter_Metabolite_ID = 1000682
 MassHunter Metabolite ID: Software for identification of metabolites. More...
 
 MS_MassHunter_BioConfirm = 1000683
 MassHunter BioConfirm: Software for protein characterization. More...
 
 MS_Genespring_MS = 1000684
 Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data. More...
 
 MS_MassHunter_Mass_Profiler = 1000685
 MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data. More...
 
 MS_METLIN = 1000686
 METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites. More...
 
 MS_Spectrum_Mill_for_MassHunter_Workstation = 1000687
 Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures. More...
 
 MS_6300_Series_Ion_Trap_Data_Analysis_Software = 1000688
 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers. More...
 
 MS_Agilent_software = 1000689
 Agilent software: Agilent software for data acquisition and analysis. More...
 
 MS_SCIEX_software = 1000690
 SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis. More...
 
 MS_Applied_Biosystems_software = 1000691
 Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis. More...
 
 MS_Bruker_software = 1000692
 Bruker software: Bruker software for data acquisition and analysis. More...
 
 MS_Thermo_Finnigan_software = 1000693
 Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis. More...
 
 MS_Waters_software = 1000694
 Waters software: Waters software for data acquisition and analysis. More...
 
 MS_apex_ultra = 1000695
 apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. More...
 
 MS_autoflex_III_smartbeam = 1000696
 autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF. More...
 
 MS_Bruker_Daltonics_HCT_Series = 1000697
 Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series. More...
 
 MS_HCTultra = 1000698
 HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI. More...
 
 MS_HCTultra_PTM = 1000699
 HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR. More...
 
 MS_HCTultra_ETD_II = 1000700
 HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD. More...
 
 MS_microflex_LT = 1000701
 microflex LT: Bruker Daltonics' microflex LT: MALDI TOF. More...
 
 MS_micrOTOF = 1000702
 micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI. More...
 
 MS_micrOTOF_Q = 1000703
 micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI. More...
 
 MS_micrOTOF_Q_II = 1000704
 micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI. More...
 
 MS_ultraflex_III_TOF_TOF = 1000705
 ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF. More...
 
 MS_apexControl = 1000706
 apexControl: Bruker software for data acquisition. More...
 
 MS_BioTools = 1000707
 BioTools: Bruker software for data analysis. More...
 
 MS_CLINPROT = 1000708
 CLINPROT: Bruker CLINPROT software. More...
 
 MS_CLINPROT_micro = 1000709
 CLINPROT micro: Bruker CLINPROT micro software. More...
 
 MS_CLINPROT_robot = 1000710
 CLINPROT robot: Bruker CLINPROT robot software. More...
 
 MS_ClinProTools = 1000711
 ClinProTools: Bruker ClinProTools software. More...
 
 MS_Compass = 1000712
 Compass: Bruker Compass software. More...
 
 MS_Compass_for_HCT_esquire = 1000713
 Compass for HCT/esquire: Bruker Compass for HCT/esquire software. More...
 
 MS_Compass_for_micrOTOF = 1000714
 Compass for micrOTOF: Bruker Compass for micrOTOF software. More...
 
 MS_Compass_OpenAccess = 1000715
 Compass OpenAccess: Bruker compass OpenAccess software. More...
 
 MS_Compass_Security_Pack = 1000716
 Compass Security Pack: Bruker compass Security Pack software. More...
 
 MS_CompassXport = 1000717
 CompassXport: Bruker stand-alone software for data conversion. More...
 
 MS_CompassXtract = 1000718
 CompassXtract: Bruker software library for data access. More...
 
 MS_DataAnalysis = 1000719
 DataAnalysis: Bruker software for data analysis. More...
 
 MS_dpControl = 1000720
 dpControl: Bruker software for data acquisition. More...
 
 MS_esquireControl = 1000721
 esquireControl: Bruker software for data acquisition. More...
 
 MS_flexImaging = 1000722
 flexImaging: Bruker software for data analysis. More...
 
 MS_GENOLINK = 1000723
 GENOLINK: Bruker GENOLINK software. More...
 
 MS_GenoTools = 1000724
 GenoTools: Bruker GenoTools software. More...
 
 MS_HCTcontrol = 1000725
 HCTcontrol: Bruker software for data acquisition. More...
 
 MS_micrOTOFcontrol = 1000726
 micrOTOFcontrol: Bruker software for data acquisition. More...
 
 MS_PolyTools = 1000727
 PolyTools: Bruker PolyTools software. More...
 
 MS_ProfileAnalysis = 1000728
 ProfileAnalysis: Bruker software for data analysis. More...
 
 MS_PROTEINEER = 1000729
 PROTEINEER: Bruker PROTEINEER software. More...
 
 MS_PROTEINEER_dp = 1000730
 PROTEINEER dp: Bruker PROTEINEER dp software. More...
 
 MS_PROTEINEER_fc = 1000731
 PROTEINEER fc: Bruker PROTEINEER fc software. More...
 
 MS_PROTEINEER_spII = 1000732
 PROTEINEER spII: Bruker PROTEINEER spII software. More...
 
 MS_PROTEINEER_LC = 1000733
 PROTEINEER-LC: Bruker PROTEINEER-LC software. More...
 
 MS_ProteinScape = 1000734
 ProteinScape: Bruker ProteinScape software. More...
 
 MS_PureDisk = 1000735
 PureDisk: BrukerPureDisk software. More...
 
 MS_QuantAnalysis = 1000736
 QuantAnalysis: Bruker software for data analysis. More...
 
 MS_spControl = 1000737
 spControl: Bruker software for data acquisition. More...
 
 MS_TargetAnalysis = 1000738
 TargetAnalysis: Bruker TargetAnalysis software. More...
 
 MS_WARP_LC = 1000739
 WARP-LC: Bruker WARP-LC software. More...
 
 MS_parameter_file = 1000740
 parameter file: Parameter file used to configure the acquisition of raw data on the instrument. More...
 
 MS_Conversion_to_dta = 1000741
 Conversion to dta: Conversion to dta format. More...
 
 MS_Bioworks_SRF_format = 1000742
 Bioworks SRF format: Thermo Finnigan SRF file format. More...
 
 MS_TSQ_Quantum_Ultra_AM = 1000743
 TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM. More...
 
 MS_selected_ion_m_z = 1000744
 selected ion m/z: Mass-to-charge ratio of an selected ion. More...
 
 MS_retention_time_alignment = 1000745
 retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics. More...
 
 MS_high_intensity_data_point_removal = 1000746
 high intensity data point removal: The removal of very high intensity data points. More...
 
 MS_completion_time = 1000747
 completion time: The time that a data processing action was finished. More...
 
 MS_SSQ_7000 = 1000748
 SSQ 7000: ThermoFinnigan SSQ 7000 MS. More...
 
 MS_TSQ_7000 = 1000749
 TSQ 7000: ThermoFinnigan TSQ 7000 MS. More...
 
 MS_TSQ = 1000750
 TSQ: ThermoFinnigan TSQ MS. More...
 
 MS_TSQ_Quantum_Ultra = 1000751
 TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra. More...
 
 MS_TOPP_software = 1000752
 TOPP software: TOPP (The OpenMS proteomics pipeline) software. More...
 
 MS_BaselineFilter = 1000753
 BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. More...
 
 MS_DBExporter = 1000754
 DBExporter: Exports data from an OpenMS database to a file. More...
 
 MS_DBImporter = 1000755
 DBImporter: Imports data to an OpenMS database. More...
 
 MS_FileConverter = 1000756
 FileConverter: Converts between different MS file formats. More...
 
 MS_FileFilter = 1000757
 FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files. More...
 
 MS_FileMerger = 1000758
 FileMerger: Merges several MS files into one file. More...
 
 MS_InternalCalibration = 1000759
 InternalCalibration: Applies an internal calibration. More...
 
 MS_MapAligner_OBSOLETE = 1000760
 MapAligner: Corrects retention time distortions between maps. More...
 
 MS_MapNormalizer = 1000761
 MapNormalizer: Normalizes peak intensities in an MS run. More...
 
 MS_NoiseFilter_OBSOLETE = 1000762
 NoiseFilter: Removes noise from profile spectra by using different smoothing techniques. More...
 
 MS_PeakPicker_OBSOLETE = 1000763
 PeakPicker: Finds mass spectrometric peaks in profile mass spectra. More...
 
 MS_Resampler = 1000764
 Resampler: Transforms an LC/MS map into a resampled map or a png image. More...
 
 MS_SpectraFilter_OBSOLETE = 1000765
 SpectraFilter: Applies a filter to peak spectra. More...
 
 MS_TOFCalibration = 1000766
 TOFCalibration: Applies time of flight calibration. More...
 
 MS_native_spectrum_identifier_format = 1000767
 native spectrum identifier format: Describes how the native spectrum identifiers are formated. More...
 
 MS_nativeID_format = MS_native_spectrum_identifier_format
 nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated. More...
 
 MS_Thermo_nativeID_format = 1000768
 Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger. More...
 
 MS_Waters_nativeID_format = 1000769
 Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger. More...
 
 MS_WIFF_nativeID_format = 1000770
 WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger. More...
 
 MS_Bruker_Agilent_YEP_nativeID_format = 1000771
 Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger. More...
 
 MS_Bruker_BAF_nativeID_format = 1000772
 Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger. More...
 
 MS_Bruker_FID_nativeID_format = 1000773
 Bruker FID nativeID format: Native format defined by file=xsd:IDREF. More...
 
 MS_multiple_peak_list_nativeID_format = 1000774
 multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger. More...
 
 MS_single_peak_list_nativeID_format = 1000775
 single peak list nativeID format: Native format defined by file=xsd:IDREF. More...
 
 MS_scan_number_only_nativeID_format = 1000776
 scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger. More...
 
 MS_spectrum_identifier_nativeID_format = 1000777
 spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger. More...
 
 MS_charge_state_calculation = 1000778
 charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm. More...
 
 MS_below_precursor_intensity_dominance_charge_state_calculation = 1000779
 below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z. More...
 
 MS_precursor_recalculation = 1000780
 precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions. More...
 
 MS_msPrefix_precursor_recalculation = 1000781
 msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans. More...
 
 MS_Savitzky_Golay_smoothing = 1000782
 Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques. More...
 
 MS_LOWESS_smoothing = 1000783
 LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible. More...
 
 MS_Gaussian_smoothing = 1000784
 Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function. More...
 
 MS_binomial_smoothing = MS_Gaussian_smoothing
 binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function. More...
 
 MS_Weierstrass_transform = MS_Gaussian_smoothing
 Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function. More...
 
 MS_moving_average_smoothing = 1000785
 moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect. More...
 
 MS_box_smoothing = MS_moving_average_smoothing
 box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect. More...
 
 MS_boxcar_smoothing = MS_moving_average_smoothing
 boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect. More...
 
 MS_sliding_average_smoothing = MS_moving_average_smoothing
 sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect. More...
 
 MS_non_standard_data_array = 1000786
 non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added. More...
 
 MS_inclusive_low_intensity_threshold = 1000787
 inclusive low intensity threshold: Threshold at or below which some action is taken. More...
 
 MS_inclusive_high_intensity_threshold = 1000788
 inclusive high intensity threshold: Threshold at or above which some action is taken. More...
 
 MS_enhanced_multiply_charged_spectrum = 1000789
 enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions. More...
 
 MS_time_delayed_fragmentation_spectrum = 1000790
 time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation. More...
 
 MS_enhanced_resolution_scan_OBSOLETE = 1000791
 enhanced resolution scan: Scan with enhanced resolution. More...
 
 MS_isolation_window_attribute = 1000792
 isolation window attribute: Isolation window parameter. More...
 
 MS_isolation_window_upper_limit_OBSOLETE = 1000793
 isolation window upper limit: The highest m/z being isolated in an isolation window. More...
 
 MS_isolation_window_lower_limit_OBSOLETE = 1000794
 isolation window lower limit: The lowest m/z being isolated in an isolation window. More...
 
 MS_no_combination = 1000795
 no combination: Use this term if only one scan was recorded or there is no information about scans available. More...
 
 MS_spectrum_title = 1000796
 spectrum title: A free-form text title describing a spectrum. More...
 
 MS_peak_list_scans = 1000797
 peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term. More...
 
 MS_peak_list_raw_scans = 1000798
 peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term. More...
 
 MS_custom_unreleased_software_tool = 1000799
 custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added. More...
 
 MS_mass_resolving_power = 1000800
 mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported. More...
 
 MS_area_peak_picking = 1000801
 area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported. More...
 
 MS_sum_peak_picking = MS_area_peak_picking
 sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported. More...
 
 MS_height_peak_picking = 1000802
 height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported. More...
 
 MS_max_peak_picking = MS_height_peak_picking
 max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported. More...
 
 MS_analyzer_scan_offset = 1000803
 analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value. More...
 
 MS_electromagnetic_radiation_spectrum = 1000804
 electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength. More...
 
 MS_EMR_spectrum = MS_electromagnetic_radiation_spectrum
 EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength. More...
 
 MS_emission_spectrum = 1000805
 emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited. More...
 
 MS_absorption_spectrum = 1000806
 absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited. More...
 
 MS_Th_s = 1000807
 Th/s: Unit describing the scan rate of a spectrum in Thomson per second. More...
 
 MS_chromatogram_attribute = 1000808
 chromatogram attribute: Chromatogram properties that are associated with a value. More...
 
 MS_chromatogram_title = 1000809
 chromatogram title: A free-form text title describing a chromatogram. More...
 
 MS_mass_chromatogram = 1000810
 mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time. More...
 
 MS_electromagnetic_radiation_chromatogram = 1000811
 electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time. More...
 
 MS_EMR_radiation_chromatogram = MS_electromagnetic_radiation_chromatogram
 EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time. More...
 
 MS_absorption_chromatogram = 1000812
 absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time. More...
 
 MS_emission_chromatogram = 1000813
 emission chromatogram: The measurement of light emitted by the sample as a function of the retention time. More...
 
 MS_counts_per_second = 1000814
 counts per second: The number of counted events observed per second in one or a group of elements of a detector. More...
 
 MS_Bruker_BAF_format = 1000815
 Bruker BAF format: Bruker BAF raw file format. More...
 
 MS_Bruker_U2_format = 1000816
 Bruker U2 format: Bruker HyStar U2 file format. More...
 
 MS_HyStar = 1000817
 HyStar: Bruker software for hyphenated experiments. More...
 
 MS_Acquity_UPLC_PDA = 1000818
 Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector. More...
 
 MS_Acquity_UPLC_FLR = 1000819
 Acquity UPLC FLR: Acquity UPLC Fluorescence Detector. More...
 
 MS_flow_rate_array = 1000820
 flow rate array: A data array of flow rate measurements. More...
 
 MS_pressure_array = 1000821
 pressure array: A data array of pressure measurements. More...
 
 MS_temperature_array = 1000822
 temperature array: A data array of temperature measurements. More...
 
 MS_Bruker_U2_nativeID_format = 1000823
 Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger. More...
 
 MS_no_nativeID_format = 1000824
 no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format. More...
 
 MS_Bruker_FID_format = 1000825
 Bruker FID format: Bruker FID file format. More...
 
 MS_elution_time = 1000826
 elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography. More...
 
 MS_isolation_window_target_m_z = 1000827
 isolation window target m/z: The primary or reference m/z about which the isolation window is defined. More...
 
 MS_isolation_window_lower_offset = 1000828
 isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z. More...
 
 MS_isolation_window_upper_offset = 1000829
 isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z. More...
 
 MS_sample_preparation = 1000831
 sample preparation: Properties of the preparation steps which took place before the measurement was performed. More...
 
 MS_MALDI_matrix_application = 1000832
 MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution. More...
 
 MS_matrix_application_type = 1000833
 matrix application type: Describes the technique how the matrix is put on the sample target. More...
 
 MS_matrix_solution = 1000834
 matrix solution: Describes the chemical solution used as matrix. More...
 
 MS_matrix_solution_concentration = 1000835
 matrix solution concentration: Concentration of the chemical solution used as matrix. More...
 
 MS_dried_droplet_MALDI_matrix_preparation = 1000836
 dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation. More...
 
 MS_printed_MALDI_matrix_preparation = 1000837
 printed MALDI matrix preparation: Printed MALDI matrix preparation. More...
 
 MS_sprayed_MALDI_matrix_preparation = 1000838
 sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation. More...
 
 MS_precoated_MALDI_sample_plate = 1000839
 precoated MALDI sample plate: Precoated MALDI sample plate. More...
 
 MS_laser = 1000840
 laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation. More...
 
 MS_laser_attribute = 1000841
 laser attribute: Laser properties that are associated with a value. More...
 
 MS_laser_type = 1000842
 laser type: Type of laser used for desorption purpose. More...
 
 MS_wavelength_OBSOLETE = 1000843
 wavelength: The distance between two peaks of the emitted laser beam. More...
 
 MS_focus_diameter_x = 1000844
 focus diameter x: Describes the diameter of the laser beam in x direction. More...
 
 MS_focus_diameter_y = 1000845
 focus diameter y: Describes the diameter of the laser beam in y direction. More...
 
 MS_pulse_energy = 1000846
 pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means. More...
 
 MS_pulse_duration = 1000847
 pulse duration: Describes how long the laser beam was emitted from the laser device. More...
 
 MS_attenuation = 1000848
 attenuation: Describes the reduction of the intensity of the laser beam energy. More...
 
 MS_impact_angle = 1000849
 impact angle: Describes the angle between the laser beam and the sample target. More...
 
 MS_gas_laser = 1000850
 gas laser: Laser which is powered by a gaseous medium. More...
 
 MS_solid_state_laser = 1000851
 solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states. More...
 
 MS_dye_laser = 1000852
 dye-laser: Dye lasers use an organic dye as the gain medium. More...
 
 MS_free_electron_laser = 1000853
 free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term. More...
 
 MS_LTQ_XL = 1000854
 LTQ XL: Thermo Scientific LTQ XL MS. More...
 
 MS_LTQ_Velos = 1000855
 LTQ Velos: Thermo Scientific LTQ Velos MS. More...
 
 MS_LTQ_Velos_ETD = 1000856
 LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD. More...
 
 MS_run_attribute = 1000857
 run attribute: Properties of the described run. More...
 
 MS_fraction_identifier = 1000858
 fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information. More...
 
 MS_molecule = 1000859
 molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction. More...
 
 MS_peptide = 1000860
 peptide: A compound of low molecular weight that is composed of two or more amino acids. More...
 
 MS_chemical_compound_attribute = 1000861
 chemical compound attribute: A describable property of a chemical compound. More...
 
 MS_isoelectric_point = 1000862
 isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field. More...
 
 MS_pI = MS_isoelectric_point
 pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field. More...
 
 MS_predicted_isoelectric_point = 1000863
 predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm. More...
 
 MS_predicted_pI = MS_predicted_isoelectric_point
 predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm. More...
 
 MS_chemical_compound_formula = 1000864
 chemical compound formula: A combination of symbols used to express the chemical composition of a compound. More...
 
 MS_empirical_formula = 1000865
 empirical formula: A chemical formula which expresses the proportions of the elements present in a substance. More...
 
 MS_molecular_formula = 1000866
 molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked. More...
 
 MS_structural_formula = 1000867
 structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other. More...
 
 MS_SMILES_string = 1000868
 SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string. More...
 
 MS_collision_gas_pressure = 1000869
 collision gas pressure: The gas pressure of the collision gas used for collisional excitation. More...
 
 MS_4000_QTRAP_OBSOLETE = 1000870
 4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000. More...
 
 MS_SRM_software = 1000871
 SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs. More...
 
 MS_MaRiMba = 1000872
 MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology. More...
 
 MS_peptide_attribute_calculation_software = 1000873
 peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides. More...
 
 MS_SSRCalc = 1000874
 SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence. More...
 
 MS_declustering_potential = 1000875
 declustering potential: Potential difference between the orifice and the skimmer in volts. More...
 
 MS_cone_voltage = 1000876
 cone voltage: Potential difference between the sampling cone/orifice in volts. More...
 
 MS_tube_lens_voltage = 1000877
 tube lens voltage: Potential difference setting of the tube lens in volts. More...
 
 MS_external_reference_identifier = 1000878
 external reference identifier: An identifier/accession number to an external reference database. More...
 
 MS_PubMed_identifier = 1000879
 PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015). More...
 
 MS_interchannel_delay = 1000880
 interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched. More...
 
 MS_chemical_compound = 1000881
 chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight. More...
 
 MS_protein = 1000882
 protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein. More...
 
 MS_protein_short_name = 1000883
 protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN). More...
 
 MS_protein_attribute = 1000884
 protein attribute: An nonphysical attribute describing a specific protein. More...
 
 MS_protein_accession = 1000885
 protein accession: Accession number for a specific protein in a database. More...
 
 MS_protein_name = 1000886
 protein name: A long name describing the function of the protein. More...
 
 MS_peptide_attribute = 1000887
 peptide attribute: A nonphysical attribute that can be used to describe a peptide. More...
 
 MS_unmodified_peptide_sequence = 1000888
 unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present. More...
 
 MS_modified_peptide_sequence = 1000889
 modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present. More...
 
 MS_peptide_labeling_state = 1000890
 peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled. More...
 
 MS_heavy_labeled_peptide = 1000891
 heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes. More...
 
 MS_unlabeled_peptide = 1000892
 unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy". More...
 
 MS_light_labeled_peptide = MS_unlabeled_peptide
 light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy". More...
 
 MS_peptide_group_label = 1000893
 peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label. More...
 
 MS_retention_time = 1000894
 retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column. More...
 
 MS_local_retention_time = 1000895
 local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup. More...
 
 MS_normalized_retention_time = 1000896
 normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup. More...
 
 MS_predicted_retention_time = 1000897
 predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application. More...
 
 MS_standard = 1000898
 standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence. More...
 
 MS_de_facto_standard = 1000899
 de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard. More...
 
 MS_minimum_information_standard = 1000900
 minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result. More...
 
 MS_retention_time_normalization_standard = 1000901
 retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column. More...
 
 MS_H_PINS_retention_time_normalization_standard = 1000902
 H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column. More...
 
 MS_product_ion_series_ordinal = 1000903
 product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion). More...
 
 MS_product_ion_m_z_delta = 1000904
 product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z. More...
 
 MS_percent_of_base_peak_times_100 = 1000905
 percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries. More...
 
 MS_peak_intensity_rank = 1000906
 peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc. More...
 
 MS_peak_targeting_suitability_rank = 1000907
 peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant. More...
 
 MS_transition = 1000908
 transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely. More...
 
 MS_reaction = MS_transition
 reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely. More...
 
 MS_transition_validation_method = 1000909
 transition validation method: The strategy used to validate that a transition is effective. More...
 
 MS_transition_optimized_on_specified_instrument = 1000910
 transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined. More...
 
 MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument = 1000911
 transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. More...
 
 MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument = 1000912
 transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad). More...
 
 MS_transition_predicted_by_informatic_analysis = 1000913
 transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence. More...
 
 MS_tab_delimited_text_format = 1000914
 tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character. More...
 
 MS_retention_time_window_attribute = 1000915
 retention time window attribute: An attribute of a window in time about which a peptide might elute from the column. More...
 
 MS_retention_time_window_lower_offset = 1000916
 retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time. More...
 
 MS_retention_time_window_upper_offset = 1000917
 retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time. More...
 
 MS_target_list = 1000918
 target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically. More...
 
 MS_target_inclusion_exclusion_priority = 1000919
 target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other. More...
 
 MS_includes_supersede_excludes = 1000920
 includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict. More...
 
 MS_excludes_supersede_includes = 1000921
 excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict. More...
 
 MS_Skyline = 1000922
 Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington. More...
 
 MS_TIQAM = 1000923
 TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology. More...
 
 MS_MaRiMba_OBSOLETE = 1000924
 MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology. More...
 
 MS_ATAQS = 1000925
 ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology. More...
 
 MS_product_interpretation_rank = 1000926
 product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1. More...
 
 MS_ion_injection_time = 1000927
 ion injection time: The length of time spent filling an ion trapping device. More...
 
 MS_calibration_spectrum = 1000928
 calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample. More...
 
 MS_Shimadzu_Biotech_nativeID_format = 1000929
 Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger. More...
 
 MS_Shimadzu_Biotech_database_entity = 1000930
 Shimadzu Biotech database entity: Shimadzu Biotech format. More...
 
 MS_QTRAP_5500 = 1000931
 QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500. More...
 
 MS_TripleTOF_5600 = 1000932
 TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer. More...
 
 MS_protein_modifications = 1000933
 protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation. More...
 
 MS_gene_name = 1000934
 gene name: Name of the gene from which the protein is translated. More...
 
 MS_spectrum_interpretation = 1001000
 spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra. More...
 
 MS_SEQUEST_CleavesAt = 1001005
 SEQUEST:CleavesAt: More...
 
 MS_SEQUEST_ViewCV = 1001006
 SEQUEST:ViewCV: SEQUEST View Input Parameters. More...
 
 MS_SEQUEST_OutputLines = 1001007
 SEQUEST:OutputLines: Number of peptide results to show. More...
 
 MS_SEQUEST_DescriptionLines = 1001009
 SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides. More...
 
 MS_de_novo_search = 1001010
 de novo search: A de novo sequencing search (without database). More...
 
 MS_search_database_details = 1001011
 search database details: Details about the database searched. More...
 
 MS_database_source = 1001012
 database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other). More...
 
 MS_database_name = 1001013
 database name: The name of the search database (nr, SwissProt or est_human). More...
 
 MS_database_local_file_path_OBSOLETE = 1001014
 database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view. More...
 
 MS_database_original_uri = 1001015
 database original uri: URI, from where the search database was originally downloaded. More...
 
 MS_database_version_OBSOLETE = 1001016
 database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database. More...
 
 MS_database_release_date_OBSOLETE = 1001017
 database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database. More...
 
 MS_database_type = 1001018
 database type: Database containing amino acid or nucleic acid sequences. More...
 
 MS_database_filtering = 1001019
 database filtering: Was there filtering used on the database. More...
 
 MS_DB_filter_taxonomy = 1001020
 DB filter taxonomy: A taxonomy filter was to the database search. More...
 
 MS_DB_filter_on_accession_numbers = 1001021
 DB filter on accession numbers: Filtering applied specifically by accession number pattern. More...
 
 MS_DB_MW_filter = 1001022
 DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value. More...
 
 MS_DB_PI_filter = 1001023
 DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value. More...
 
 MS_translation_frame = 1001024
 translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6). More...
 
 MS_translation_table = 1001025
 translation table: The translation table used to translate the nucleotides to amino acids. More...
 
 MS_SEQUEST_NormalizeXCorrValues = 1001026
 SEQUEST:NormalizeXCorrValues: More...
 
 MS_DB_filter_on_sequence_pattern = 1001027
 DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern. More...
 
 MS_SEQUEST_SequenceHeaderFilter = 1001028
 SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched. More...
 
 MS_number_of_sequences_searched = 1001029
 number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering. More...
 
 MS_number_of_peptide_seqs_compared_to_each_spectrum = 1001030
 number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum. More...
 
 MS_spectral_library_search = 1001031
 spectral library search: A search using a library of spectra. More...
 
 MS_SEQUEST_SequencePartialFilter = 1001032
 SEQUEST:SequencePartialFilter: More...
 
 MS_date___time_search_performed_OBSOLETE = 1001035
 date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run. More...
 
 MS_search_time_taken = 1001036
 search time taken: The time taken to complete the search in seconds. More...
 
 MS_SEQUEST_ShowFragmentIons = 1001037
 SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown. More...
 
 MS_SEQUEST_Consensus = 1001038
 SEQUEST:Consensus: Specify depth as value of the CVParam. More...
 
 MS_intermediate_analysis_format = 1001040
 intermediate analysis format: Type of the source file, the mzIdentML was created from. More...
 
 MS_SEQUEST_sortCV = 1001041
 SEQUEST:sortCV: SEQUEST View / Sort Input Parameters. More...
 
 MS_SEQUEST_LimitTo = 1001042
 SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam. More...
 
 MS_cleavage_agent_details = 1001044
 cleavage agent details: Details of cleavage agent (enzyme). More...
 
 MS_cleavage_agent_name = 1001045
 cleavage agent name: The name of the cleavage agent. More...
 
 MS_SEQUEST_sort_by_dCn = 1001046
 SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score. More...
 
 MS_SEQUEST_sort_by_dM = 1001047
 SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M. More...
 
 MS_SEQUEST_sort_by_Ions = 1001048
 SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions. More...
 
 MS_SEQUEST_sort_by_MH_ = 1001049
 SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion. More...
 
 MS_SEQUEST_sort_by_P = 1001050
 SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability. More...
 
 MS_multiple_enzyme_combination_rules_OBSOLETE = 1001051
 multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any. More...
 
 MS_SEQUEST_sort_by_PreviousAminoAcid = 1001052
 SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid. More...
 
 MS_SEQUEST_sort_by_Ref = 1001053
 SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference. More...
 
 MS_modification_parameters = 1001055
 modification parameters: Modification parameters for the search engine run. More...
 
 MS_modification_specificity_rule = 1001056
 modification specificity rule: The specificity rules for the modifications applied by the search engine. More...
 
 MS_tolerance_on_types_OBSOLETE = 1001057
 tolerance on types: OBSOLETE: Tolerance on types. More...
 
 MS_quality_estimation_by_manual_validation = 1001058
 quality estimation by manual validation: The quality estimation was done manually. More...
 
 MS_SEQUEST_sort_by_RSp = 1001059
 SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide). More...
 
 MS_quality_estimation_method_details = 1001060
 quality estimation method details: Method for quality estimation (manually or with decoy database). More...
 
 MS_neutral_loss_OBSOLETE = 1001061
 neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD. More...
 
 MS_Mascot_MGF_format = 1001062
 Mascot MGF format: Mascot MGF file format. More...
 
 MS_TODOscoring_model_OBSOLETE = 1001065
 TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms. More...
 
 MS_ions_series_considered_in_search = 1001066
 ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine. More...
 
 MS_SEQUEST_sort_by_Sp = 1001068
 SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score. More...
 
 MS_SEQUEST_sort_by_TIC = 1001069
 SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current. More...
 
 MS_SEQUEST_sort_by_Scan = 1001070
 SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number. More...
 
 MS_SEQUEST_sort_by_Sequence = 1001071
 SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence. More...
 
 MS_SEQUEST_sort_by_Sf = 1001072
 SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'. More...
 
 MS_database_type_amino_acid = 1001073
 database type amino acid: Database contains amino acid sequences. More...
 
 MS_database_type_nucleotide = 1001079
 database type nucleotide: Database contains nucleic acid sequences. More...
 
 MS_search_type = 1001080
 search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2). More...
 
 MS_pmf_search = 1001081
 pmf search: A peptide mass fingerprint search. More...
 
 MS_tag_search = 1001082
 tag search: A sequence tag search. More...
 
 MS_ms_ms_search = 1001083
 ms-ms search: An MS2 search (with fragment ions). More...
 
 MS_database_nr = 1001084
 database nr: Non-redundant GenBank sequence database. More...
 
 MS_protein_level_identification_attribute = 1001085
 protein-level identification attribute: Protein level information. More...
 
 MS_SEQUEST_sort_by_XCorr = 1001086
 SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score. More...
 
 MS_SEQUEST_ProcessCV = 1001087
 SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters. More...
 
 MS_protein_description = 1001088
 protein description: The protein description line from the sequence entry in the source database FASTA file. More...
 
 MS_molecule_taxonomy = 1001089
 molecule taxonomy: The taxonomy of the resultant molecule from the search. More...
 
 MS_taxonomy_nomenclature_OBSOLETE = 1001090
 taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT). More...
 
 MS_NoEnzyme_OBSOLETE = 1001091
 NoEnzyme: More...
 
 MS_peptide_sequence_level_identification_statistic = 1001092
 peptide sequence-level identification statistic: Identification confidence metric for a peptide. More...
 
 MS_sequence_coverage = 1001093
 sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated). More...
 
 MS_SEQUEST_sort_by_z = 1001094
 SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge. More...
 
 MS_SEQUEST_ProcessAll = 1001095
 SEQUEST:ProcessAll: More...
 
 MS_SEQUEST_TopPercentMostIntense = 1001096
 SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam. More...
 
 MS_distinct_peptide_sequences = 1001097
 distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold. More...
 
 MS_confident_distinct_peptide_sequences = 1001098
 confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere. More...
 
 MS_confident_peptide_qualification = 1001099
 confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than. More...
 
 MS_confident_peptide_sequence_number = 1001100
 confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere. More...
 
 MS_protein_group_or_subset_relationship = 1001101
 protein group or subset relationship: Protein group or subset relationships. More...
 
 MS_SEQUEST_Chromatogram = 1001102
 SEQUEST:Chromatogram: More...
 
 MS_SEQUEST_InfoAndLog = 1001103
 SEQUEST:InfoAndLog: More...
 
 MS_database_UniProtKB_Swiss_Prot = 1001104
 database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase. More...
 
 MS_peptide_sequence_level_identification_attribute = 1001105
 peptide sequence-level identification attribute: Peptide level information. More...
 
 MS_SEQUEST_TopNumber = 1001106
 SEQUEST:TopNumber: Specify "number" as value of the CVParam. More...
 
 MS_data_stored_in_database = 1001107
 data stored in database: Source file for this mzIdentML was a data set in a database. More...
 
 MS_param__a_ion = 1001108
 param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side. More...
 
 MS_SEQUEST_CullTo = 1001109
 SEQUEST:CullTo: Specify cull string as value of the CVParam. More...
 
 MS_SEQUEST_modeCV = 1001110
 SEQUEST:modeCV: SEQUEST Mode Input Parameters. More...
 
 MS_SEQUEST_Full = 1001111
 SEQUEST:Full: More...
 
 MS_n_terminal_flanking_residue = 1001112
 n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein. More...
 
 MS_c_terminal_flanking_residue = 1001113
 c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein. More...
 
 MS_retention_time_s__OBSOLETE = 1001114
 retention time(s): Retention time of the spectrum from the source file. More...
 
 MS_scan_number_s__OBSOLETE = 1001115
 scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData. More...
 
 MS_single_protein_identification_statistic = 1001116
 single protein identification statistic: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group). More...
 
 MS_theoretical_mass = 1001117
 theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications). More...
 
 MS_param__b_ion = 1001118
 param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side. More...
 
 MS_param__c_ion = 1001119
 param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side. More...
 
 MS_SEQUEST_FormatAndLinks = 1001120
 SEQUEST:FormatAndLinks: More...
 
 MS_number_of_matched_peaks = 1001121
 number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count. More...
 
 MS_ions_series_considered = 1001122
 ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb). More...
 
 MS_number_of_peaks_used = 1001123
 number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't. More...
 
 MS_number_of_peaks_submitted = 1001124
 number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine. More...
 
 MS_manual_validation = 1001125
 manual validation: Result of quality estimation: decision of a manual validation. More...
 
 MS_SEQUEST_Fast = 1001126
 SEQUEST:Fast: More...
 
 MS_peptide_sharing_details = 1001127
 peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide. More...
 
 MS_SEQUEST_selectCV = 1001128
 SEQUEST:selectCV: SEQUEST Select Input Parameters. More...
 
 MS_quantification_information = 1001129
 quantification information: Quantification information. More...
 
 MS_peptide_raw_area_OBSOLETE = 1001130
 peptide raw area: Peptide raw area. More...
 
 MS_error_on_peptide_area = 1001131
 error on peptide area: Error on peptide area. More...
 
 MS_peptide_ratio = 1001132
 peptide ratio: Peptide ratio. More...
 
 MS_error_on_peptide_ratio = 1001133
 error on peptide ratio: Error on peptide ratio. More...
 
 MS_protein_ratio = 1001134
 protein ratio: Protein ratio. More...
 
 MS_error_on_protein_ratio = 1001135
 error on protein ratio: Error on protein ratio. More...
 
 MS_p_value__protein_diff_from_1_randomly__OBSOLETE = 1001136
 p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly). More...
 
 MS_absolute_quantity = 1001137
 absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample. More...
 
 MS_error_on_absolute_quantity = 1001138
 error on absolute quantity: Error on absolute quantity. More...
 
 MS_quantitation_software_name = 1001139
 quantitation software name: Quantitation software name. More...
 
 MS_quantitation_software_version_OBSOLETE = 1001140
 quantitation software version: Quantitation software version. More...
 
 MS_intensity_of_precursor_ion = 1001141
 intensity of precursor ion: The intensity of the precursor ion. More...
 
 MS_database_IPI_human = 1001142
 database IPI_human: International Protein Index database for Homo sapiens sequences. More...
 
 MS_PSM_level_search_engine_specific_statistic = 1001143
 PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores. More...
 
 MS_SEQUEST_SelectDefault = 1001144
 SEQUEST:SelectDefault: More...
 
 MS_SEQUEST_SelectAdvancedCV = 1001145
 SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters. More...
 
 MS_param__a_ion_NH3_DEPRECATED = 1001146
 param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia. More...
 
 MS_protein_ambiguity_group_result_details = 1001147
 protein ambiguity group result details: More...
 
 MS_param__a_ion_H2O_DEPRECATED = 1001148
 param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED. More...
 
 MS_param__b_ion_NH3_DEPRECATED = 1001149
 param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia. More...
 
 MS_param__b_ion_H2O_DEPRECATED = 1001150
 param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED. More...
 
 MS_param__y_ion_NH3_DEPRECATED = 1001151
 param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia. More...
 
 MS_param__y_ion_H2O_DEPRECATED = 1001152
 param: y ion-H2O DEPRECATED: More...
 
 MS_search_engine_specific_score = 1001153
 search engine specific score: Search engine specific scores. More...
 
 MS_SEQUEST_probability = 1001154
 SEQUEST:probability: The SEQUEST result 'Probability'. More...
 
 MS_SEQUEST_xcorr = 1001155
 SEQUEST:xcorr: The SEQUEST result 'XCorr'. More...
 
 MS_SEQUEST_deltacn = 1001156
 SEQUEST:deltacn: The SEQUEST result 'DeltaCn'. More...
 
 MS_SEQUEST_sp = 1001157
 SEQUEST:sp: The SEQUEST result 'Sp' (protein). More...
 
 MS_SEQUEST_Uniq = 1001158
 SEQUEST:Uniq: More...
 
 MS_SEQUEST_expectation_value = 1001159
 SEQUEST:expectation value: The SEQUEST result 'Expectation value'. More...
 
 MS_SEQUEST_sf = 1001160
 SEQUEST:sf: The SEQUEST result 'Sf'. More...
 
 MS_SEQUEST_matched_ions = 1001161
 SEQUEST:matched ions: The SEQUEST result 'Matched Ions'. More...
 
 MS_SEQUEST_total_ions = 1001162
 SEQUEST:total ions: The SEQUEST result 'Total Ions'. More...
 
 MS_SEQUEST_consensus_score = 1001163
 SEQUEST:consensus score: The SEQUEST result 'Consensus Score'. More...
 
 MS_Paragon_unused_protscore = 1001164
 Paragon:unused protscore: The Paragon result 'Unused ProtScore'. More...
 
 MS_Paragon_total_protscore = 1001165
 Paragon:total protscore: The Paragon result 'Total ProtScore'. More...
 
 MS_Paragon_score = 1001166
 Paragon:score: The Paragon result 'Score'. More...
 
 MS_Paragon_confidence = 1001167
 Paragon:confidence: The Paragon result 'Confidence'. More...
 
 MS_Paragon_expression_error_factor = 1001168
 Paragon:expression error factor: The Paragon result 'Expression Error Factor'. More...
 
 MS_Paragon_expression_change_p_value = 1001169
 Paragon:expression change p-value: The Paragon result 'Expression change P-value'. More...
 
 MS_Paragon_contrib = 1001170
 Paragon:contrib: The Paragon result 'Contrib'. More...
 
 MS_Mascot_score = 1001171
 Mascot:score: The Mascot result 'Score'. More...
 
 MS_Mascot_expectation_value = 1001172
 Mascot:expectation value: The Mascot result 'expectation value'. More...
 
 MS_Mascot_matched_ions = 1001173
 Mascot:matched ions: The Mascot result 'Matched ions'. More...
 
 MS_Mascot_total_ions = 1001174
 Mascot:total ions: The Mascot result 'Total ions'. More...
 
 MS_peptide_shared_in_multiple_proteins = 1001175
 peptide shared in multiple proteins: A peptide matching multiple proteins. More...
 
 MS______KR_____P_ = 1001176
 (?<=[KR])(?!P): Regular expression for Trypsin. More...
 
 MS_number_of_molecular_hypothesis_considered = 1001177
 number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search. More...
 
 MS_database_EST = 1001178
 database EST: Expressed sequence tag nucleotide sequence database. More...
 
 MS_Cleavage_agent_regular_expression = 1001180
 Cleavage agent regular expression: Regular expressions for cleavage enzymes. More...
 
 MS_search_statistics = 1001184
 search statistics: The details of the actual run of the search. More...
 
 MS_modification_specificity_peptide_N_term = 1001189
 modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide. More...
 
 MS_modification_specificity_peptide_C_term = 1001190
 modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide. More...
 
 MS_p_value_OBSOLETE = 1001191
 p-value: Quality estimation by p-value. More...
 
 MS_Expect_value = 1001192
 Expect value: Result of quality estimation: Expect value. More...
 
 MS_confidence_score = 1001193
 confidence score: Result of quality estimation: confidence score. More...
 
 MS_quality_estimation_with_decoy_database = 1001194
 quality estimation with decoy database: Quality estimation by decoy database. More...
 
 MS_decoy_DB_type_reverse = 1001195
 decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order. More...
 
 MS_decoy_DB_type_randomized = 1001196
 decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass). More...
 
 MS_DB_composition_target_decoy = 1001197
 DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries. More...
 
 MS_protein_identification_confidence_metric = 1001198
 protein identification confidence metric: Identification confidence metric for a protein. More...
 
 MS_Mascot_DAT_format = 1001199
 Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format. More...
 
 MS_SEQUEST_out_file_format = 1001200
 SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format. More...
 
 MS_DB_MW_filter_maximum = 1001201
 DB MW filter maximum: Maximum value of molecular weight filter. More...
 
 MS_DB_MW_filter_minimum = 1001202
 DB MW filter minimum: Minimum value of molecular weight filter. More...
 
 MS_DB_PI_filter_maximum = 1001203
 DB PI filter maximum: Maximum value of isoelectric point filter. More...
 
 MS_DB_PI_filter_minimum = 1001204
 DB PI filter minimum: Minimum value of isoelectric point filter. More...
 
 MS_Mascot = 1001207
 Mascot: The name of the Mascot search engine. More...
 
 MS_SEQUEST = 1001208
 SEQUEST: The name of the SEQUEST search engine. More...
 
 MS_Phenyx = 1001209
 Phenyx: The name of the Phenyx search engine. More...
 
 MS_mass_type_settings = 1001210
 mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average). More...
 
 MS_parent_mass_type_mono = 1001211
 parent mass type mono: Mass type setting for parent mass was monoisotopic. More...
 
 MS_parent_mass_type_average = 1001212
 parent mass type average: Mass type setting for parent mass was average isotopic. More...
 
 MS_search_result_details_OBSOLETE = 1001213
 search result details: OBSOLETE: Scores and global result characteristics. More...
 
 MS_protein_level_global_FDR = 1001214
 protein-level global FDR: Estimation of the global false discovery rate of proteins. More...
 
 MS_SEQUEST_PeptideSp = 1001215
 SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide). More...
 
 MS_SEQUEST_PeptideRankSp = 1001217
 SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'. More...
 
 MS_SEQUEST_PeptideNumber = 1001218
 SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide). More...
 
 MS_SEQUEST_PeptideIdnumber = 1001219
 SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide). More...
 
 MS_frag__y_ion = 1001220
 frag: y ion: Fragmentation information, type of product: y ion. More...
 
 MS_product_ion_attribute = 1001221
 product ion attribute: Fragmentation information like ion types. More...
 
 MS_frag__b_ion___H2O = 1001222
 frag: b ion - H2O: Fragmentation information, type of product: b ion without water. More...
 
 MS_frag__y_ion___H2O = 1001223
 frag: y ion - H2O: Fragmentation information, type of product: y ion without water. More...
 
 MS_frag__b_ion = 1001224
 frag: b ion: Fragmentation information, type of product: b ion. More...
 
 MS_product_ion_m_z = 1001225
 product ion m/z: The m/z of the product ion. More...
 
 MS_fragment_ion_m_z = MS_product_ion_m_z
 fragment ion m/z (product ion m/z): The m/z of the product ion. More...
 
 MS_product_ion_intensity = 1001226
 product ion intensity: The intensity of a single product ion. More...
 
 MS_fragment_ion_intensity = MS_product_ion_intensity
 fragment ion intensity (product ion intensity): The intensity of a single product ion. More...
 
 MS_product_ion_m_z_error = 1001227
 product ion m/z error: The product ion m/z error. More...
 
 MS_frag__x_ion = 1001228
 frag: x ion: Fragmentation information, type of product: x ion. More...
 
 MS_frag__a_ion = 1001229
 frag: a ion: Fragmentation information, type of product: a ion. More...
 
 MS_frag__z_ion = 1001230
 frag: z ion: Fragmentation information, type of product: z ion. More...
 
 MS_frag__c_ion = 1001231
 frag: c ion: Fragmentation information, type of product: c ion. More...
 
 MS_frag__b_ion___NH3 = 1001232
 frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia. More...
 
 MS_frag__y_ion___NH3 = 1001233
 frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia. More...
 
 MS_frag__a_ion___H2O = 1001234
 frag: a ion - H2O: Fragmentation information, type of product: a ion without water. More...
 
 MS_frag__a_ion___NH3 = 1001235
 frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia. More...
 
 MS_frag__d_ion = 1001236
 frag: d ion: Fragmentation information, type of product: d ion. More...
 
 MS_frag__v_ion = 1001237
 frag: v ion: Fragmentation information, type of product: v ion. More...
 
 MS_frag__w_ion = 1001238
 frag: w ion: Fragmentation information, type of product: w ion. More...
 
 MS_frag__immonium_ion = 1001239
 frag: immonium ion: Fragmentation information, type of product: immonium ion. More...
 
 MS_non_identified_ion = 1001240
 non-identified ion: Non-identified ion. More...
 
 MS_co_eluting_ion = 1001241
 co-eluting ion: Co-eluting ion. More...
 
 MS_SEQUEST_out_folder = 1001242
 SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files. More...
 
 MS_SEQUEST_summary = 1001243
 SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins). More...
 
 MS_PerSeptive_PKS_format = 1001245
 PerSeptive PKS format: PerSeptive peak list file format. More...
 
 MS_SCIEX_API_III_format = 1001246
 SCIEX API III format: PE SCIEX peak list file format. More...
 
 MS_Bruker_XML_format = 1001247
 Bruker XML format: Bruker data exchange XML format. More...
 
 MS_search_input_details = 1001249
 search input details: Details describing the search input. More...
 
 MS_local_FDR = 1001250
 local FDR: Result of quality estimation: the local FDR at the current position of a sorted list. More...
 
 MS_Trypsin = 1001251
 Trypsin: Enzyme trypsin. More...
 
 MS_DB_source_EBI = 1001252
 DB source EBI: Database source EBI. More...
 
 MS_DB_source_NCBI = 1001253
 DB source NCBI: Database source NCBI. More...
 
 MS_DB_source_UniProt = 1001254
 DB source UniProt: Database source UniProt. More...
 
 MS_fragment_mass_type_average = 1001255
 fragment mass type average: Mass type setting for fragment mass was average isotopic. More...
 
 MS_fragment_mass_type_mono = 1001256
 fragment mass type mono: Mass type setting for fragment mass was monoisotopic. More...
 
 MS_param__v_ion = 1001257
 param: v ion: Parameter information, type of product: side chain loss v ion. More...
 
 MS_param__d_ion = 1001258
 param: d ion: Parameter information, type of product: side chain loss d ion. More...
 
 MS_param__immonium_ion = 1001259
 param: immonium ion: Parameter information, type of product: immonium ion. More...
 
 MS_param__w_ion = 1001260
 param: w ion: Parameter information, type of product: side chain loss w ion. More...
 
 MS_param__x_ion = 1001261
 param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side. More...
 
 MS_param__y_ion = 1001262
 param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side. More...
 
 MS_param__z_ion = 1001263
 param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side. More...
 
 MS_role_type = 1001266
 role type: Role of a Person or Organization. More...
 
 MS_software_vendor = 1001267
 software vendor: Software vendor role. More...
 
 MS_programmer = 1001268
 programmer: Programmer role. More...
 
 MS_instrument_vendor = 1001269
 instrument vendor: Instrument vendor role. More...
 
 MS_lab_personnel = 1001270
 lab personnel: Lab personnel role. More...
 
 MS_researcher = 1001271
 researcher: Researcher role. More...
 
 MS_____R____P_ = 1001272
 (?<=R)(?!P): Regular expression for Arg-C. More...
 
 MS_____BD__ = 1001273
 (?=[BD]): Regular expression for Asp-N. More...
 
 MS_____DE__ = 1001274
 (?=[DE]): Regular expression for Asp-N-ambic. More...
 
 MS_ProteinScape_SearchEvent = 1001275
 ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent. More...
 
 MS_ProteinScape_Gel = 1001276
 ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel. More...
 
 MS_decoy_DB_accession_regexp = 1001283
 decoy DB accession regexp: Specify the regular expression for decoy accession numbers. More...
 
 MS_decoy_DB_derived_from_OBSOLETE = 1001284
 decoy DB derived from: The name of the database, the search database was derived from. More...
 
 MS_database_IPI_mouse = 1001285
 database IPI_mouse: International Protein Index database for Mus musculus sequences. More...
 
 MS_database_IPI_rat = 1001286
 database IPI_rat: International Protein Index database for Rattus norvegicus sequences. More...
 
 MS_database_IPI_zebrafish = 1001287
 database IPI_zebrafish: International Protein Index database for Danio rerio sequences. More...
 
 MS_database_IPI_chicken = 1001288
 database IPI_chicken: International Protein Index database for Gallus gallus sequences. More...
 
 MS_database_IPI_cow = 1001289
 database IPI_cow: International Protein Index database for Bos taurus sequences. More...
 
 MS_database_IPI_arabidopsis = 1001290
 database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences. More...
 
 MS_decoy_DB_from_nr_OBSOLETE = 1001291
 decoy DB from nr: Decoy database from a non-redundant GenBank sequence database. More...
 
 MS_decoy_DB_from_IPI_rat_OBSOLETE = 1001292
 decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus. More...
 
 MS_decoy_DB_from_IPI_mouse_OBSOLETE = 1001293
 decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus. More...
 
 MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE = 1001294
 decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana. More...
 
 MS_decoy_DB_from_EST_OBSOLETE = 1001295
 decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database. More...
 
 MS_decoy_DB_from_IPI_zebrafish_OBSOLETE = 1001296
 decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio. More...
 
 MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE = 1001297
 decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database. More...
 
 MS_decoy_DB_from_IPI_chicken_OBSOLETE = 1001298
 decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus. More...
 
 MS_decoy_DB_from_IPI_cow_OBSOLETE = 1001299
 decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus. More...
 
 MS_decoy_DB_from_IPI_human_OBSOLETE = 1001300
 decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens. More...
 
 MS_protein_rank = 1001301
 protein rank: The rank of the protein in a list sorted by the search engine. More...
 
 MS_search_engine_specific_input_parameter = 1001302
 search engine specific input parameter: Search engine specific input parameters. More...
 
 MS_Arg_C = 1001303
 Arg-C: Endoproteinase Arg-C. More...
 
 MS_Clostripain = MS_Arg_C
 Clostripain (Arg-C): Endoproteinase Arg-C. More...
 
 MS_Asp_N = 1001304
 Asp-N: Endoproteinase Asp-N. More...
 
 MS_Asp_N_ambic = 1001305
 Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic). More...
 
 MS_Chymotrypsin = 1001306
 Chymotrypsin: Enzyme chymotrypsin. More...
 
 MS_CNBr = 1001307
 CNBr: Cyanogen bromide. More...
 
 MS_Formic_acid = 1001308
 Formic_acid: Formic acid. More...
 
 MS_Lys_C = 1001309
 Lys-C: Endoproteinase Lys-C. More...
 
 MS_Lys_C_P = 1001310
 Lys-C/P: Proteinase Lys-C/P. More...
 
 MS_PepsinA = 1001311
 PepsinA: PepsinA proteinase. More...
 
 MS_TrypChymo = 1001312
 TrypChymo: Cleavage agent TrypChymo. More...
 
 MS_Trypsin_P = 1001313
 Trypsin/P: Cleavage agent Trypsin/P. More...
 
 MS_V8_DE = 1001314
 V8-DE: Cleavage agent V8-DE. More...
 
 MS_V8_E = 1001315
 V8-E: Cleavage agent V8-E. More...
 
 MS_Mascot_SigThreshold = 1001316
 Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05). More...
 
 MS_Mascot_MaxProteinHits = 1001317
 Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1. More...
 
 MS_Mascot_ProteinScoringMethod = 1001318
 Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'. More...
 
 MS_Mascot_MinMSMSThreshold = 1001319
 Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed. More...
 
 MS_Mascot_ShowHomologousProteinsWithSamePeptides = 1001320
 Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed. More...
 
 MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides = 1001321
 Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed. More...
 
 MS_Mascot_RequireBoldRed = 1001322
 Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits. More...
 
 MS_Mascot_UseUnigeneClustering = 1001323
 Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use. More...
 
 MS_Mascot_IncludeErrorTolerantMatches = 1001324
 Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included. More...
 
 MS_Mascot_ShowDecoyMatches = 1001325
 Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database. More...
 
 MS_add_others_OBSOLETE = 1001326
 add_others: OBSOLETE. More...
 
 MS_OMSSA_evalue = 1001328
 OMSSA:evalue: OMSSA E-value. More...
 
 MS_OMSSA_pvalue = 1001329
 OMSSA:pvalue: OMSSA p-value. More...
 
 MS_X_Tandem_expect = 1001330
 X!Tandem:expect: The X!Tandem expectation value. More...
 
 MS_X_Tandem_hyperscore = 1001331
 X!Tandem:hyperscore: The X!Tandem hyperscore. More...
 
 MS______FYWL_____P_ = 1001332
 (?<=[FYWL])(?!P): Regular expression for Chymotrypsin. More...
 
 MS_____M_ = 1001333
 (?<=M): Regular expression for CNBr. More...
 
 MS______D_______D__ = 1001334
 ((?<=D))|((?=D)): Regular expression for formic acid. More...
 
 MS_____K____P_ = 1001335
 (?<=K)(?!P): Regular expression for Lys-C. More...
 
 MS_____K_ = 1001336
 (?<=K): Regular expression for Lys-C/P. More...
 
 MS______FL__ = 1001337
 (?<=[FL]): Regular expression for PepsinA. More...
 
 MS______FYWLKR_____P_ = 1001338
 (?<=[FYWLKR])(?!P): Regular expression for TrypChymo. More...
 
 MS______KR__ = 1001339
 (?<=[KR]): Regular expression for Trypsin/P. More...
 
 MS______BDEZ_____P_ = 1001340
 (?<=[BDEZ])(?!P): Regular expression for V8-DE. More...
 
 MS______EZ_____P_ = 1001341
 (?<=[EZ])(?!P): Regular expression for V8-E. More...
 
 MS_database_sequence_details = 1001342
 database sequence details: Details about a single database sequence. More...
 
 MS_NA_sequence = 1001343
 NA sequence: The sequence is a nucleic acid sequence. More...
 
 MS_AA_sequence = 1001344
 AA sequence: The sequence is a amino acid sequence. More...
 
 MS_mass_table_source = 1001345
 mass table source: Children of this term specify the source of the mass table used. More...
 
 MS_AAIndex_mass_table = 1001346
 AAIndex mass table: The masses used in the mass table are taken from AAIndex. More...
 
 MS_database_file_formats = 1001347
 database file formats: The children of this term define file formats of the sequence database used. More...
 
 MS_FASTA_format = 1001348
 FASTA format: The sequence database was stored in the FASTA format. More...
 
 MS_ASN_1 = 1001349
 ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format. More...
 
 MS_NCBI___p_ = 1001350
 NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format. More...
 
 MS_clustal_aln = 1001351
 clustal aln: ClustalW ALN (multiple alignment) format. More...
 
 MS_embl_em = 1001352
 embl em: EMBL entry format. More...
 
 MS_NBRF_PIR = 1001353
 NBRF PIR: The NBRF PIR was used as format. More...
 
 MS_mass_table_options = 1001354
 mass table options: Root node for options for the mass table used. More...
 
 MS_peptide_descriptions = 1001355
 peptide descriptions: Descriptions of peptides. More...
 
 MS_spectrum_descriptions = 1001356
 spectrum descriptions: Descriptions of the input spectra. More...
 
 MS_spectrum_quality_descriptions = 1001357
 spectrum quality descriptions: Description of the quality of the input spectrum. More...
 
 MS_msmsEval_quality = 1001358
 msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval. More...
 
 MS_ambiguous_residues = 1001359
 ambiguous residues: Children of this term describe ambiguous residues. More...
 
 MS_alternate_single_letter_codes = 1001360
 alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard. More...
 
 MS_alternate_mass = 1001361
 alternate mass: List of masses a non-standard letter code is replaced with. More...
 
 MS_number_of_unmatched_peaks = 1001362
 number of unmatched peaks: The number of unmatched peaks. More...
 
 MS_peptide_unique_to_one_protein = 1001363
 peptide unique to one protein: A peptide matching only one. More...
 
 MS_peptide_sequence_level_global_FDR = 1001364
 peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_frag__internal_yb_ion = 1001365
 frag: internal yb ion: Fragmentation information, type of product: internal yb ion. More...
 
 MS_frag__internal_ya_ion = 1001366
 frag: internal ya ion: Fragmentation information, type of product: internal ya ion. More...
 
 MS_frag__z_1_ion = 1001367
 frag: z+1 ion: Fragmentation information, type of product: z+1 ion. More...
 
 MS_frag__z_2_ion = 1001368
 frag: z+2 ion: Fragmentation information, type of product: z+2 ion. More...
 
 MS_text_format = 1001369
 text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS2) search. More...
 
 MS_Mascot_homology_threshold = 1001370
 Mascot:homology threshold: The Mascot result 'homology threshold'. More...
 
 MS_Mascot_identity_threshold = 1001371
 Mascot:identity threshold: The Mascot result 'identity threshold'. More...
 
 MS_SEQUEST_Sequences = 1001372
 SEQUEST:Sequences: More...
 
 MS_SEQUEST_TIC = 1001373
 SEQUEST:TIC: SEQUEST total ion current. More...
 
 MS_SEQUEST_Sum = 1001374
 SEQUEST:Sum: More...
 
 MS_Phenyx_Instrument_Type = 1001375
 Phenyx:Instrument Type: The instrument type parameter value in Phenyx. More...
 
 MS_Phenyx_Scoring_Model = 1001376
 Phenyx:Scoring Model: The selected scoring model in Phenyx. More...
 
 MS_Phenyx_Default_Parent_Charge = 1001377
 Phenyx:Default Parent Charge: The default parent charge value in Phenyx. More...
 
 MS_Phenyx_Trust_Parent_Charge = 1001378
 Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct. More...
 
 MS_Phenyx_Turbo = 1001379
 Phenyx:Turbo: The turbo mode parameter in Phenyx. More...
 
 MS_Phenyx_Turbo_ErrorTol = 1001380
 Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx. More...
 
 MS_Phenyx_Turbo_Coverage = 1001381
 Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx. More...
 
 MS_Phenyx_Turbo_Series = 1001382
 Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx. More...
 
 MS_Phenyx_MinPepLength = 1001383
 Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx. More...
 
 MS_Phenyx_MinPepzscore = 1001384
 Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx. More...
 
 MS_Phenyx_MaxPepPvalue = 1001385
 Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx. More...
 
 MS_Phenyx_AC_Score = 1001386
 Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx. More...
 
 MS_Phenyx_Conflict_Resolution = 1001387
 Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used. More...
 
 MS_Phenyx_AC = 1001388
 Phenyx:AC: The primary sequence database identifier of a protein in Phenyx. More...
 
 MS_Phenyx_ID = 1001389
 Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx. More...
 
 MS_Phenyx_Score = 1001390
 Phenyx:Score: The protein score of a protein match in Phenyx. More...
 
 MS_Phenyx_Peptides1 = 1001391
 Phenyx:Peptides1: First number of phenyx result "#Peptides". More...
 
 MS_Phenyx_Peptides2 = 1001392
 Phenyx:Peptides2: Second number of phenyx result "#Peptides". More...
 
 MS_Phenyx_Auto = 1001393
 Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx. More...
 
 MS_Phenyx_User = 1001394
 Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx. More...
 
 MS_Phenyx_Pepzscore = 1001395
 Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx. More...
 
 MS_Phenyx_PepPvalue = 1001396
 Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx. More...
 
 MS_Phenyx_NumberOfMC = 1001397
 Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx. More...
 
 MS_Phenyx_Modif = 1001398
 Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx. More...
 
 MS_OMSSA_csv_format = 1001399
 OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format. More...
 
 MS_OMSSA_xml_format = 1001400
 OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format. More...
 
 MS_X_Tandem_xml_format = 1001401
 X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format. More...
 
 MS_spectrum_identification_result_details = 1001405
 spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results. More...
 
 MS_param__internal_yb_ion = 1001406
 param: internal yb ion: Parameter information, type of product: internal yb ion. More...
 
 MS_param__internal_ya_ion = 1001407
 param: internal ya ion: Parameter information, type of product: internal ya ion. More...
 
 MS_param__z_1_ion = 1001408
 param: z+1 ion: Parameter information, type of product: z+1 ion. More...
 
 MS_param__z_2_ion = 1001409
 param: z+2 ion: Parameter information, type of product: z+2 ion. More...
 
 MS_translation_start_codons = 1001410
 translation start codons: The translation start codons used to translate the nucleotides to amino acids. More...
 
 MS_search_tolerance_specification = 1001411
 search tolerance specification: Specification of the search tolerance. More...
 
 MS_search_tolerance_plus_value = 1001412
 search tolerance plus value: More...
 
 MS_search_tolerance_minus_value = 1001413
 search tolerance minus value: More...
 
 MS_MGF_scans_OBSOLETE = 1001414
 MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file. More...
 
 MS_MGF_raw_scans_OBSOLETE = 1001415
 MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file. More...
 
 MS_spectrum_title_OBSOLETE = 1001416
 spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE. More...
 
 MS_SpectraST_dot = 1001417
 SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity. More...
 
 MS_SpectraST_dot_bias = 1001418
 SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks. More...
 
 MS_SpectraST_discriminant_score_F = 1001419
 SpectraST:discriminant score F: SpectraST spectrum score. More...
 
 MS_SpectraST_delta = 1001420
 SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up. More...
 
 MS_pepXML_format = 1001421
 pepXML format: Source file for this mzIdentML was in a pepXML file format. More...
 
 MS_protXML_format = 1001422
 protXML format: Source file for this mzIdentML was in protXML file format. More...
 
 MS_translation_table_description = 1001423
 translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids. More...
 
 MS_ProteinExtractor_Methodname = 1001424
 ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm. More...
 
 MS_ProteinExtractor_GenerateNonRedundant = 1001425
 ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated. More...
 
 MS_ProteinExtractor_IncludeIdentified = 1001426
 ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included. More...
 
 MS_ProteinExtractor_MaxNumberOfProteins = 1001427
 ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider. More...
 
 MS_ProteinExtractor_MaxProteinMass = 1001428
 ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein. More...
 
 MS_ProteinExtractor_MinNumberOfPeptides = 1001429
 ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider. More...
 
 MS_ProteinExtractor_UseMascot = 1001430
 ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_MascotPeptideScoreThreshold = 1001431
 ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_MascotUniqueScore = 1001432
 ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation. More...
 
 MS_ProteinExtractor_MascotUseIdentityScore = 1001433
 ProteinExtractor:MascotUseIdentityScore: More...
 
 MS_ProteinExtractor_MascotWeighting = 1001434
 ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor. More...
 
 MS_ProteinExtractor_UseSequest = 1001435
 ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_SequestPeptideScoreThreshold = 1001436
 ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_SequestUniqueScore = 1001437
 ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation. More...
 
 MS_ProteinExtractor_SequestWeighting = 1001438
 ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor. More...
 
 MS_ProteinExtractor_UseProteinSolver = 1001439
 ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold = 1001440
 ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_ProteinSolverUniqueScore = 1001441
 ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation. More...
 
 MS_ProteinExtractor_ProteinSolverWeighting = 1001442
 ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor. More...
 
 MS_ProteinExtractor_UsePhenyx = 1001443
 ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_PhenyxPeptideScoreThreshold = 1001444
 ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score. More...
 
 MS_ProteinExtractor_PhenyxUniqueScore = 1001445
 ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation. More...
 
 MS_ProteinExtractor_PhenyxWeighting = 1001446
 ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor. More...
 
 MS_prot_FDR_threshold = 1001447
 prot:FDR threshold: False-discovery rate threshold for proteins. More...
 
 MS_pep_FDR_threshold = 1001448
 pep:FDR threshold: False-discovery rate threshold for peptides. More...
 
 MS_OMSSA_e_value_threshold = 1001449
 OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation. More...
 
 MS_decoy_DB_details = 1001450
 decoy DB details: Details of decoy generation and database structure. More...
 
 MS_decoy_DB_generation_algorithm = 1001451
 decoy DB generation algorithm: Name of algorithm used for decoy generation. More...
 
 MS_decoy_DB_type_shuffle = 1001452
 decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order. More...
 
 MS_DB_composition_only_decoy = 1001453
 DB composition only decoy: Decoy database composition: database contains only decoy entries. More...
 
 MS_quality_estimation_with_implicite_decoy_sequences = 1001454
 quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy). More...
 
 MS_acquisition_software = 1001455
 acquisition software: Acquisition software. More...
 
 MS_analysis_software = 1001456
 analysis software: Analysis software. More...
 
 MS_data_processing_software = 1001457
 data processing software: Data processing software. More...
 
 MS_spectrum_generation_information = 1001458
 spectrum generation information: Vocabularies describing the spectrum generation information. More...
 
 MS_file_format = 1001459
 file format: Format of data files. More...
 
 MS_unknown_modification = 1001460
 unknown modification: This term should be given if the modification was unknown. More...
 
 MS_greylag = 1001461
 greylag: Greylag identification software. More...
 
 MS_PEFF_format = 1001462
 PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format. More...
 
 MS_Phenyx_XML_format = 1001463
 Phenyx XML format: Phenyx open XML file format. More...
 
 MS_DTASelect_format = 1001464
 DTASelect format: DTASelect file format. More...
 
 MS_MS2_format = 1001466
 MS2 format: MS2 file format for MS2 spectral data. More...
 
 MS_taxonomy__NCBI_TaxID = 1001467
 taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens. More...
 
 MS_taxonomy__common_name = 1001468
 taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible. More...
 
 MS_taxonomy__scientific_name = 1001469
 taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible. More...
 
 MS_taxonomy__Swiss_Prot_ID = 1001470
 taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible. More...
 
 MS_peptide_modification_details = 1001471
 peptide modification details: The children of this term can be used to describe modifications. More...
 
 MS_selected_ion_monitoring_chromatogram = 1001472
 selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point. More...
 
 MS_SIM_chromatogram = MS_selected_ion_monitoring_chromatogram
 SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point. More...
 
 MS_selected_reaction_monitoring_chromatogram = 1001473
 selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point. More...
 
 MS_SRM_chromatogram = MS_selected_reaction_monitoring_chromatogram
 SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point. More...
 
 MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE = 1001474
 consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point. More...
 
 MS_CRM_chromatogram_OBSOLETE = MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
 CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point. More...
 
 MS_OMSSA = 1001475
 OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra. More...
 
 MS_X_Tandem = 1001476
 X!Tandem: X!Tandem was used to analyze the spectra. More...
 
 MS_SpectraST = 1001477
 SpectraST: SpectraST was used to analyze the spectra. More...
 
 MS_Mascot_Parser = 1001478
 Mascot Parser: Mascot Parser was used to analyze the spectra. More...
 
 MS_null_terminated_ASCII_string = 1001479
 null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte. More...
 
 MS_SCIEX_TOF_TOF_nativeID_format = 1001480
 SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger. More...
 
 MS_SCIEX_TOF_TOF_database = 1001481
 SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database. More...
 
 MS_5800_TOF_TOF = 1001482
 5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer. More...
 
 MS_SCIEX_TOF_TOF_Series_Explorer_Software = 1001483
 SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis. More...
 
 MS_intensity_normalization = 1001484
 intensity normalization: Normalization of data point intensities. More...
 
 MS_m_z_calibration = 1001485
 m/z calibration: Calibration of data point m/z positions. More...
 
 MS_data_filtering = 1001486
 data filtering: Filtering out part of the data. More...
 
 MS_ProteinExtractor = 1001487
 ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape. More...
 
 MS_Mascot_Distiller = 1001488
 Mascot Distiller: Mascot Distiller. More...
 
 MS_Mascot_Integra = 1001489
 Mascot Integra: Mascot Integra. More...
 
 MS_Percolator = 1001490
 Percolator: Percolator. More...
 
 MS_percolator_Q_value = 1001491
 percolator:Q value: Percolator:Q value. More...
 
 MS_percolator_score = 1001492
 percolator:score: Percolator:score. More...
 
 MS_percolator_PEP = 1001493
 percolator:PEP: Posterior error probability. More...
 
 MS_no_threshold = 1001494
 no threshold: In case no threshold was used. More...
 
 MS_ProteinScape_SearchResultId = 1001495
 ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database. More...
 
 MS_ProteinScape_SearchEventId = 1001496
 ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database. More...
 
 MS_ProteinScape_ProfoundProbability = 1001497
 ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape. More...
 
 MS_Profound_z_value = 1001498
 Profound:z value: The Profound z value. More...
 
 MS_Profound_Cluster = 1001499
 Profound:Cluster: The Profound cluster score. More...
 
 MS_Profound_ClusterRank = 1001500
 Profound:ClusterRank: The Profound cluster rank. More...
 
 MS_MSFit_Mowse_score = 1001501
 MSFit:Mowse score: The MSFit Mowse score. More...
 
 MS_Sonar_Score = 1001502
 Sonar:Score: The Sonar score. More...
 
 MS_ProteinScape_PFFSolverExp = 1001503
 ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape. More...
 
 MS_ProteinScape_PFFSolverScore = 1001504
 ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape. More...
 
 MS_ProteinScape_IntensityCoverage = 1001505
 ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape. More...
 
 MS_ProteinScape_SequestMetaScore = 1001506
 ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores. More...
 
 MS_ProteinExtractor_Score = 1001507
 ProteinExtractor:Score: The score calculated by ProteinExtractor. More...
 
 MS_Agilent_MassHunter_nativeID_format = 1001508
 Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger. More...
 
 MS_Agilent_MassHunter_format = 1001509
 Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer. More...
 
 MS_TSQ_Vantage = 1001510
 TSQ Vantage: TSQ Vantage. More...
 
 MS_Sequence_database_filter_types = 1001511
 Sequence database filter types: Filter types which are used to filter a sequence database. More...
 
 MS_Sequence_database_filters = 1001512
 Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search. More...
 
 MS_DB_sequence_filter_pattern = 1001513
 DB sequence filter pattern: DB sequence filter pattern. More...
 
 MS_DB_accession_filter_string = 1001514
 DB accession filter string: DB accession filter string. More...
 
 MS_frag__c_ion___H2O = 1001515
 frag: c ion - H2O: Fragmentation information, type of product: c ion without water. More...
 
 MS_frag__c_ion___NH3 = 1001516
 frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia. More...
 
 MS_frag__z_ion___H2O = 1001517
 frag: z ion - H2O: Fragmentation information, type of product: z ion without water. More...
 
 MS_frag__z_ion___NH3 = 1001518
 frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia. More...
 
 MS_frag__x_ion___H2O = 1001519
 frag: x ion - H2O: Fragmentation information, type of product: x ion without water. More...
 
 MS_frag__x_ion___NH3 = 1001520
 frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia. More...
 
 MS_frag__precursor_ion___H2O = 1001521
 frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water. More...
 
 MS_frag__precursor_ion___NH3 = 1001522
 frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia. More...
 
 MS_frag__precursor_ion = 1001523
 frag: precursor ion: Fragmentation information, type of product: precursor ion. More...
 
 MS_fragment_neutral_loss = 1001524
 fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion. More...
 
 MS_precursor_neutral_loss = 1001525
 precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion. More...
 
 MS_spectrum_from_database_integer_nativeID_format = 1001526
 spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long. More...
 
 MS_Proteinscape_spectra = 1001527
 Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database. More...
 
 MS_Mascot_query_number = 1001528
 Mascot query number: Native format defined by query=xsd:nonNegativeInteger. More...
 
 MS_spectra_data_details = 1001529
 spectra data details: Child-terms contain information to map the results back to spectra. More...
 
 MS_mzML_unique_identifier = 1001530
 mzML unique identifier: Native format defined by mzMLid=xsd:IDREF. More...
 
 MS_spectrum_from_ProteinScape_database_nativeID_format = 1001531
 spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long. More...
 
 MS_spectrum_from_database_string_nativeID_format = 1001532
 spectrum from database string nativeID format: Native format defined by databasekey=xsd:string. More...
 
 MS_Bruker_Daltonics_esquire_series = 1001533
 Bruker Daltonics esquire series: Bruker Daltonics' esquire series. More...
 
 MS_Bruker_Daltonics_flex_series = 1001534
 Bruker Daltonics flex series: Bruker Daltonics' flex series. More...
 
 MS_Bruker_Daltonics_BioTOF_series = 1001535
 Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series. More...
 
 MS_Bruker_Daltonics_micrOTOF_series = 1001536
 Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series. More...
 
 MS_BioTOF = 1001537
 BioTOF: Bruker Daltonics' BioTOF: ESI TOF. More...
 
 MS_BioTOF_III = 1001538
 BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF. More...
 
 MS_UltroTOF_Q = 1001539
 UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional). More...
 
 MS_micrOTOF_II = 1001540
 micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI. More...
 
 MS_maXis = 1001541
 maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI. More...
 
 MS_amaZon_ETD = 1001542
 amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR. More...
 
 MS_microflex_LRF = 1001543
 microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF. More...
 
 MS_ultrafleXtreme = 1001544
 ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF. More...
 
 MS_Bruker_Daltonics_amaZon_series = 1001545
 Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series. More...
 
 MS_amaZon_X = 1001546
 amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR. More...
 
 MS_Bruker_Daltonics_maXis_series = 1001547
 Bruker Daltonics maXis series: Bruker Daltonics' maXis series. More...
 
 MS_Bruker_Daltonics_solarix_series = 1001548
 Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR. More...
 
 MS_solariX = 1001549
 solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR. More...
 
 MS_microflex_II = 1001550
 microflex II: Bruker Daltonics' microflex II: MALDI TOF. More...
 
 MS_autoflex_II_TOF_TOF = 1001553
 autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF. More...
 
 MS_autoflex_III_TOF_TOF_smartbeam = 1001554
 autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF. More...
 
 MS_autoflex = 1001555
 autoflex: Bruker Daltonics' autoflex: MALDI TOF. More...
 
 MS_Bruker_Daltonics_apex_series = 1001556
 Bruker Daltonics apex series: Bruker Daltonics' apex series. More...
 
 MS_Shimadzu_Corporation_software = 1001557
 Shimadzu Corporation software: Shimadzu Corporation software. More...
 
 MS_MALDI_Solutions = 1001558
 MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis. More...
 
 MS_SCIEX_TOF_TOF_T2D_nativeID_format = 1001559
 SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF. More...
 
 MS_SCIEX_TOF_TOF_T2D_format = 1001560
 SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format. More...
 
 MS_Scaffold = 1001561
 Scaffold: Scaffold analysis software. More...
 
 MS_Scaffold_nativeID_format = 1001562
 Scaffold nativeID format: Scaffold native ID format. More...
 
 MS_SEQUEST_SQT_format = 1001563
 SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format. More...
 
 MS_Discoverer_MSF_format = 1001564
 Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format. More...
 
 MS_IdentityE_XML_format = 1001565
 IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format. More...
 
 MS_ProteinLynx_XML_format = 1001566
 ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format. More...
 
 MS_SpectrumMill_directories = 1001567
 SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format. More...
 
 MS_Scaffold_Peptide_Probability = 1001568
 Scaffold:Peptide Probability: Scaffold peptide probability score. More...
 
 MS_IdentityE_Score = 1001569
 IdentityE Score: Waters IdentityE peptide score. More...
 
 MS_ProteinLynx_Log_Likelihood = 1001570
 ProteinLynx:Log Likelihood: ProteinLynx log likelihood score. More...
 
 MS_ProteinLynx_Ladder_Score = 1001571
 ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score. More...
 
 MS_SpectrumMill_Score = 1001572
 SpectrumMill:Score: Spectrum mill peptide score. More...
 
 MS_SpectrumMill_SPI = 1001573
 SpectrumMill:SPI: SpectrumMill SPI score (%). More...
 
 MS_report_only_spectra_assigned_to_identified_proteins = 1001574
 report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins. More...
 
 MS_Scaffold__Minimum_Peptide_Count = 1001575
 Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted. More...
 
 MS_Scaffold__Minimum_Protein_Probability = 1001576
 Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted. More...
 
 MS_Scaffold__Minimum_Peptide_Probability = 1001577
 Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring. More...
 
 MS_minimum_number_of_enzymatic_termini = 1001578
 minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted. More...
 
 MS_Scaffold_Protein_Probability = 1001579
 Scaffold:Protein Probability: Scaffold protein probability score. More...
 
 MS_SpectrumMill_Discriminant_Score = 1001580
 SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software. More...
 
 MS_FAIMS_compensation_voltage = 1001581
 FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion. More...
 
 MS_FAIMS_CV = MS_FAIMS_compensation_voltage
 FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion. More...
 
 MS_XCMS = 1001582
 XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data. More...
 
 MS_MaxQuant = 1001583
 MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data. More...
 
 MS_combined_pmf___ms_ms_search = 1001584
 combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF). More...
 
 MS_MyriMatch = 1001585
 MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra. More...
 
 MS_DirecTag = 1001586
 DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra. More...
 
 MS_TagRecon = 1001587
 TagRecon: Tabb Lab software for reconciling sequence tags to a protein database. More...
 
 MS_Pepitome = 1001588
 Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra. More...
 
 MS_MyriMatch_MVH = 1001589
 MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance. More...
 
 MS_Pepitome_MVH = MS_MyriMatch_MVH
 Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance. More...
 
 MS_TagRecon_MVH = MS_MyriMatch_MVH
 TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance. More...
 
 MS_MyriMatch_mzFidelity = 1001590
 MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution. More...
 
 MS_Pepitome_mzFidelity = MS_MyriMatch_mzFidelity
 Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution. More...
 
 MS_TagRecon_mzFidelity = MS_MyriMatch_mzFidelity
 TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution. More...
 
 MS_anchor_protein = 1001591
 anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins. More...
 
 MS_family_member_protein = 1001592
 family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches. More...
 
 MS_group_member_with_undefined_relationship_OR_ortholog_protein = 1001593
 group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein. More...
 
 MS_sequence_same_set_protein = 1001594
 sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences. More...
 
 MS_spectrum_same_set_protein = 1001595
 spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra. More...
 
 MS_sequence_sub_set_protein = 1001596
 sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches. More...
 
 MS_spectrum_sub_set_protein = 1001597
 spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches. More...
 
 MS_sequence_subsumable_protein = 1001598
 sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins. More...
 
 MS_spectrum_subsumable_protein = 1001599
 spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins. More...
 
 MS_protein_inference_confidence_category = 1001600
 protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable). More...
 
 MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE = 1001601
 ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files. More...
 
 MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE = 1001602
 ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE = 1001603
 ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc). More...
 
 MS_ProteomeDiscoverer_Activation_Type_OBSOLETE = 1001604
 ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any). More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit = 1001605
 ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit. More...
 
 MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE = 1001606
 ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS). More...
 
 MS_ProteomeDiscoverer_Max_Precursor_Mass = 1001607
 ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion. More...
 
 MS_ProteomeDiscoverer_Min_Precursor_Mass = 1001608
 ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count = 1001609
 ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow. More...
 
 MS_ProteomeDiscoverer_MS_Order_OBSOLETE = 1001610
 ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10). More...
 
 MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE = 1001611
 ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative). More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection = 1001612
 ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3). More...
 
 MS_ProteomeDiscoverer_SN_Threshold = 1001613
 ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed. More...
 
 MS_ProteomeDiscoverer_Scan_Type_OBSOLETE = 1001614
 ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)). More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold = 1001615
 ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements = 1001616
 ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements = 1001617
 ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements = 1001618
 ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements = 1001619
 ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements = 1001620
 ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit = 1001621
 ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset = 1001622
 ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass = 1001623
 ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor = 1001624
 ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks = 1001625
 ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses = 1001626
 ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones = 1001627
 ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum. More...
 
 MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak = 1001628
 ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS2 input spectra are removed. More...
 
 MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch = 1001629
 ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type. More...
 
 MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch = 1001630
 ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together. More...
 
 MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE = 1001631
 ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species. More...
 
 MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion = 1001632
 ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis. More...
 
 MS_ProteomeDiscoverer_Xtract_Highest_Charge = 1001633
 ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data. More...
 
 MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE = 1001634
 ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract. More...
 
 MS_ProteomeDiscoverer_Xtract_Lowest_Charge = 1001635
 ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data. More...
 
 MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE = 1001636
 ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract. More...
 
 MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only = 1001637
 ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum. More...
 
 MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder = 1001638
 ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted). More...
 
 MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy = 1001639
 ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid. More...
 
 MS_ProteomeDiscoverer_Xtract_Resolution_At_400 = 1001640
 ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400. More...
 
 MS_ProteomeDiscoverer_Lowest_Charge_State = 1001641
 ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out. More...
 
 MS_ProteomeDiscoverer_Highest_Charge_State = 1001642
 ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out. More...
 
 MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores = 1001643
 ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out. More...
 
 MS_ProteomeDiscoverer_Dynamic_Modification = 1001644
 ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs). More...
 
 MS_ProteomeDiscoverer_Static_Modification = 1001645
 ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid. More...
 
 MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE = 1001646
 ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database. More...
 
 MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search = 1001647
 ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant. More...
 
 MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size = 1001648
 ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte. More...
 
 MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL = 1001649
 ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server. More...
 
 MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search = 1001650
 ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search. More...
 
 MS_ProteomeDiscoverer_Mascot_X_Static_Modification = 1001651
 ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search. More...
 
 MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE = 1001652
 ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search. More...
 
 MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search = 1001653
 ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds. More...
 
 MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE = 1001654
 ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion. More...
 
 MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE = 1001655
 ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu. More...
 
 MS_Mascot_Instrument = 1001656
 Mascot:Instrument: Type of instrument used to acquire the data in the raw file. More...
 
 MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites = 1001657
 ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest. More...
 
 MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score = 1001658
 ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported. More...
 
 MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE = 1001659
 ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species. More...
 
 MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score = 1001660
 ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported. More...
 
 MS_ProteomeDiscoverer_Protein_Database_OBSOLETE = 1001661
 ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server). More...
 
 MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor = 1001662
 ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report. More...
 
 MS_ProteomeDiscoverer_Target_FDR_Relaxed = 1001663
 ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence. More...
 
 MS_ProteomeDiscoverer_Target_FDR_Strict = 1001664
 ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence. More...
 
 MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE = 1001665
 ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species. More...
 
 MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE = 1001666
 ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor. More...
 
 MS_Mascot_use_MudPIT_scoring_OBSOLETE = 1001667
 Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring. More...
 
 MS_ProteomeDiscoverer_Absolute_XCorr_Threshold = 1001668
 ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score = 1001669
 ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match. More...
 
 MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification = 1001670
 ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage = 1001671
 ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide = 1001672
 ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have. More...
 
 MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide = 1001673
 ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered = 1001674
 ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum. More...
 
 MS_ProteomeDiscoverer_Maximum_Peptides_Output = 1001675
 ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum. More...
 
 MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide = 1001676
 ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly. More...
 
 MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification = 1001677
 ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search. More...
 
 MS_ProteomeDiscoverer_Peptide_CTerminus = 1001678
 ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search. More...
 
 MS_ProteomeDiscoverer_Peptide_NTerminus = 1001679
 ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor = 1001680
 ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score. More...
 
 MS_ProteomeDiscoverer_Protein_Relevance_Threshold = 1001681
 ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report. More...
 
 MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE = 1001682
 ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses = 1001683
 ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments. More...
 
 MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions = 1001684
 ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions = 1001685
 ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions = 1001686
 ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions = 1001687
 ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions = 1001688
 ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions = 1001689
 ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions = 1001690
 ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions = 1001691
 ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions = 1001692
 ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions = 1001693
 ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions = 1001694
 ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions = 1001695
 ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions = 1001696
 ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor. More...
 
 MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff = 1001697
 ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported. More...
 
 MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method = 1001698
 ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window. More...
 
 MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance = 1001699
 ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks. More...
 
 MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method = 1001700
 ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation. More...
 
 MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE = 1001701
 ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData). More...
 
 MS_ProteomeDiscoverer_Spectrum_Exporter_File_name = 1001702
 ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data. More...
 
 MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins = 1001703
 ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1 = 1001704
 ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2 = 1001705
 ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3 = 1001706
 ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4 = 1001707
 ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1 = 1001708
 ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2 = 1001709
 ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3 = 1001710
 ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3. More...
 
 MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4 = 1001711
 ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1 = 1001712
 ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2 = 1001713
 ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3 = 1001714
 ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4 = 1001715
 ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1 = 1001716
 ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2 = 1001717
 ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3 = 1001718
 ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3. More...
 
 MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4 = 1001719
 ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4. More...
 
 MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE = 1001720
 ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE = 1001721
 ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE = 1001722
 ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE = 1001723
 ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_Static_Modification_for_X = 1001724
 ProteomeDiscoverer:Static Modification for X: Static Modification for X. More...
 
 MS_ProteomeDiscoverer_Initial_minimal_peptide_probability = 1001725
 ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis. More...
 
 MS_ProteomeDiscoverer_Minimal_peptide_probability = 1001726
 ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability. More...
 
 MS_ProteomeDiscoverer_Minimal_peptide_weight = 1001727
 ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability. More...
 
 MS_ProteomeDiscoverer_Number_of_input1_spectra = 1001728
 ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions. More...
 
 MS_ProteomeDiscoverer_Number_of_input2_spectra = 1001729
 ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions. More...
 
 MS_ProteomeDiscoverer_Number_of_input3_spectra = 1001730
 ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions. More...
 
 MS_ProteomeDiscoverer_Number_of_input4_spectra = 1001731
 ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions. More...
 
 MS_ProteomeDiscoverer_Number_of_input5_spectra = 1001732
 ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions. More...
 
 MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins = 1001733
 ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities). More...
 
 MS_ProteomeDiscoverer_Organism_OBSOLETE = 1001734
 ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes). More...
 
 MS_ProteomeDiscoverer_Reference_Database_OBSOLETE = 1001735
 ProteomeDiscoverer:Reference Database: Full path database name. More...
 
 MS_ProteomeDiscoverer_Residue_substitution_list = 1001736
 ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides. More...
 
 MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE = 1001737
 ProteomeDiscoverer:Source file extension: File type (if not pepXML). More...
 
 MS_ProteomeDiscoverer_Source_Files_OBSOLETE = 1001738
 ProteomeDiscoverer:Source Files: Input pepXML files. More...
 
 MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE = 1001739
 ProteomeDiscoverer:Source Files old: Input pepXML files (old). More...
 
 MS_ProteomeDiscoverer_WinCyg_reference_database = 1001740
 ProteomeDiscoverer:WinCyg reference database: Windows full path for database. More...
 
 MS_ProteomeDiscoverer_WinCyg_source_files = 1001741
 ProteomeDiscoverer:WinCyg source files: Windows pepXML file names. More...
 
 MS_LTQ_Orbitrap_Velos = 1001742
 LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions = 1001743
 ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions = 1001744
 ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions = 1001745
 ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions = 1001746
 ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions = 1001747
 ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions = 1001748
 ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions = 1001749
 ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions = 1001750
 ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions = 1001751
 ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation = 1001752
 ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly = 1001753
 ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only). More...
 
 MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this = 1001754
 ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches. More...
 
 MS_contact_phone_number = 1001755
 contact phone number: Phone number of the contact person or organization. More...
 
 MS_contact_fax_number = 1001756
 contact fax number: Fax number for the contact person or organization. More...
 
 MS_contact_toll_free_phone_number = 1001757
 contact toll-free phone number: Toll-free phone number of the contact person or organization. More...
 
 MS_Mascot_SigThresholdType = 1001758
 Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology'). More...
 
 MS_Mascot_ProteinGrouping = 1001759
 Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering'). More...
 
 MS_Percolator_features = 1001760
 Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'. More...
 
 MS_ACQUITY_UPLC = 1001761
 ACQUITY UPLC: Waters LC-system ACQUITY UPLC. More...
 
 MS_ACQUITY_UPLC_H_Class = 1001762
 ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class. More...
 
 MS_ACQUITY_UPLC_H_Class_Bio = 1001763
 ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio. More...
 
 MS_ACQUITY_UPLC_I_Class = 1001764
 ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class. More...
 
 MS_ACQUITY_UPLC_Systems_with_2D_Technology = 1001765
 ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology. More...
 
 MS_nanoACQUITY_UPLC = 1001766
 nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC. More...
 
 MS_nanoACQUITY_UPLC_System_with_Technology = 1001767
 nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology. More...
 
 MS_nanoACQUITY_UPLC_with_HDX_Technology = 1001768
 nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology. More...
 
 MS_TRIZAIC_UPLC_nanoTile = 1001769
 TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile. More...
 
 MS_GCT_Premier = 1001770
 GCT Premier: Waters oa-ToF based GCT Premier. More...
 
 MS_MALDI_Synapt_G2_HDMS = 1001771
 MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS. More...
 
 MS_MALDI_Synapt_G2_MS = 1001772
 MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS. More...
 
 MS_MALDI_Synapt_G2_S_HDMS = 1001773
 MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS. More...
 
 MS_MALDI_Synapt_G2_S_MS = 1001774
 MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS. More...
 
 MS_MALDI_Synapt_HDMS = 1001775
 MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS. More...
 
 MS_MALDI_Synapt_MS = 1001776
 MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS. More...
 
 MS_Synapt_G2_HDMS = 1001777
 Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS. More...
 
 MS_Synapt_G2_MS = 1001778
 Synapt G2 MS: Waters oa-ToF based Synapt G2 MS. More...
 
 MS_Synapt_G2_S_HDMS = 1001779
 Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS. More...
 
 MS_Synapt_G2_S_MS = 1001780
 Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS. More...
 
 MS_Synapt_HDMS = 1001781
 Synapt HDMS: Waters oa-ToF based Synapt HDMS. More...
 
 MS_Synapt_MS = 1001782
 Synapt MS: Waters oa-ToF based Synapt MS. More...
 
 MS_Xevo_G2_Q_Tof = 1001783
 Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof. More...
 
 MS_Xevo_G2_Tof = 1001784
 Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof. More...
 
 MS_Xevo_Q_Tof = 1001785
 Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof. More...
 
 MS_3100 = 1001786
 3100: Waters quadrupole based 3100. More...
 
 MS_Acquity_SQD = 1001787
 Acquity SQD: Waters quadrupole based Acquity SQD. More...
 
 MS_Acquity_TQD = 1001788
 Acquity TQD: Waters quadrupole based Acquity TQD. More...
 
 MS_Quattro_micro_GC = 1001789
 Quattro micro GC: Waters quadrupole based Quattro micro GC. More...
 
 MS_Xevo_TQ_MS = 1001790
 Xevo TQ MS: Waters quadrupole based Xevo TQ MS. More...
 
 MS_Xevo_TQD = 1001791
 Xevo TQD: Waters quadrupole based Xevo TQD. More...
 
 MS_Xevo_TQ_S = 1001792
 Xevo TQ-S: Waters quadrupole based Xevo TQ-S. More...
 
 MS_Mascot_PreferredTaxonomy = 1001793
 Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences. More...
 
 MS_Empower = 1001795
 Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition. More...
 
 MS_Unify = 1001796
 Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition. More...
 
 MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE = 1001797
 travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide. More...
 
 MS_TWIMS_OBSOLETE = MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE
 TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide. More...
 
 MS_LECO_software = 1001798
 LECO software: LECO software for data acquisition and analysis. More...
 
 MS_ChromaTOF_software = 1001799
 ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments. More...
 
 MS_LECO_instrument_model = 1001800
 LECO instrument model: LECO instrument model. More...
 
 MS_Pegasus_HRT = 1001801
 Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer. More...
 
 MS_Citius_HRT = 1001802
 Citius HRT: LECO high resolution time-of-flight LC mass spectrometer. More...
 
 MS_Pegasus = 1001803
 Pegasus: LECO GC time-of-flight mass spectrometer. More...
 
 MS_TruTOF = 1001804
 TruTOF: LECO bench-top GC time-of-flight mass spectrometer. More...
 
 MS_quantification_datatype = 1001805
 quantification datatype: The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group. More...
 
 MS_quantification_object_attribute = 1001806
 quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values. More...
 
 MS_study_variable_attribute = 1001807
 study variable attribute: Attribute describing a study variable. More...
 
 MS_technical_replicate = 1001808
 technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'. More...
 
 MS_biological_replicate = 1001809
 biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample. More...
 
 MS_experimental_condition__case_ = 1001810
 experimental condition 'case': The experimental condition is 'case' in contrast to 'control'. More...
 
 MS_experimental_condition__control_ = 1001811
 experimental condition 'control': The experimental condition is 'control' in contrast to 'case'. More...
 
 MS_experimental_condition__disease_ = 1001812
 experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'. More...
 
 MS_experimental_condition__healthy_ = 1001813
 experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'. More...
 
 MS_generic_experimental_condition = 1001814
 generic experimental condition: The experimental condition is given in the value of this term. More...
 
 MS_time_series__time_point_X = 1001815
 time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term. More...
 
 MS_dilution_series__concentration_X = 1001816
 dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term. More...
 
 MS_raw_file_attribute = 1001817
 raw file attribute: Attribute describing a raw file. More...
 
 MS_one_sample_run = 1001818
 one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free). More...
 
 MS_two_sample_run = 1001819
 two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling). More...
 
 MS_three_sample_run = 1001820
 three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC). More...
 
 MS_four_sample_run = 1001821
 four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq). More...
 
 MS_eight_sample_run = 1001822
 eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq). More...
 
 MS_raw_files_group_attribute = 1001823
 raw files group attribute: Attribute describing, how raw files build a raw file group. More...
 
 MS_merge_of_runs_of_1D_gel_bands = 1001824
 merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group. More...
 
 MS_feature_list_attribute = 1001825
 feature list attribute: Attribute describing a feature list. More...
 
 MS_mass_trace_reporting__rectangles = 1001826
 mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given. More...
 
 MS_mass_trace_reporting__polygons = 1001827
 mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit. More...
 
 MS_feature_attribute = 1001828
 feature attribute: Attribute describing a feature. More...
 
 MS_SRM_transition_ID = 1001829
 SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition. More...
 
 MS_Progenesis_LC_MS = 1001830
 Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow. More...
 
 MS_SILACAnalyzer = 1001831
 SILACAnalyzer: Software for SILAC workflow. More...
 
 MS_quantitation_software_comment_or_customizations = 1001832
 quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software. More...
 
 MS_quantitation_analysis_summary = 1001833
 quantitation analysis summary: The overall workflow of this quantitation report. More...
 
 MS_LC_MS_label_free_quantitation_analysis = 1001834
 LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map). More...
 
 MS_SILAC_quantitation_analysis = 1001835
 SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak). More...
 
 MS_spectral_counting_quantitation_analysis = 1001836
 spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant). More...
 
 MS_iTRAQ_quantitation_analysis = 1001837
 iTRAQ quantitation analysis: Quantification analysis using the SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z. More...
 
 MS_SRM_quantitation_analysis = 1001838
 SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair). More...
 
 MS_metabolic_labeling_14N___15N_quantitation_analysis = 1001839
 metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens). More...
 
 MS_LC_MS_feature_intensity = 1001840
 LC-MS feature intensity: Maximum peak intensity of the LC-MS feature. More...
 
 MS_LC_MS_feature_volume = 1001841
 LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature. More...
 
 MS_peptide_PSM_count = 1001842
 peptide PSM count: The number of MS2 spectra identified for this peptide in spectral counting. More...
 
 MS_MS1_feature_maximum_intensity = 1001843
 MS1 feature maximum intensity: Maximum intensity of MS1 feature. More...
 
 MS_MS1_feature_area = 1001844
 MS1 feature area: Area of MS1 feature. More...
 
 MS_peak_area_OBSOLETE = 1001845
 peak area: Area of MS1 peak (e.g. SILAC, 15N). More...
 
 MS_isotopic_pattern_area = 1001846
 isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N). More...
 
 MS_reporter_ion_intensity = 1001847
 reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq). More...
 
 MS_simple_ratio_of_two_values = 1001848
 simple ratio of two values: Simple ratio of two values (enumerator and denominator). More...
 
 MS_sum_of_MatchedFeature_values_OBSOLETE = 1001849
 sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values. More...
 
 MS_normalized_peptide_value = 1001850
 normalized peptide value: Normalized peptide value. More...
 
 MS_protein_value__sum_of_peptide_values = 1001851
 protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values. More...
 
 MS_normalized_protein_value = 1001852
 normalized protein value: Normalized protein value. More...
 
 MS_max_fold_change = 1001853
 max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis). More...
 
 MS_ANOVA_p_value = 1001854
 ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis). More...
 
 MS_t_test_p_value = 1001855
 t-test p-value: P-value of t-Test of two groups. More...
 
 MS_reporter_ion_raw_value = 1001856
 reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq). More...
 
 MS_reporter_ion_normalized_value = 1001857
 reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq). More...
 
 MS_XIC_area = 1001858
 XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM). More...
 
 MS_normalized_XIC_area = 1001859
 normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM). More...
 
 MS_protein_value__mean_of_peptide_ratios = 1001860
 protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios. More...
 
 MS_quantification_data_processing = 1001861
 quantification data processing: Terms used to describe types of quantification data processing. More...
 
 MS_normalization_to_mean_of_sum_of_all_proteins = 1001862
 normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting). More...
 
 MS_quantile_normalization__proteins = 1001863
 quantile normalization, proteins: Normalization of protein values to approach the same distribution. More...
 
 MS_quantile_normalization__peptides = 1001864
 quantile normalization, peptides: Normalization of peptide values to approach the same distribution. More...
 
 MS_Progenesis_automatic_alignment = 1001865
 Progenesis automatic alignment: Automatic RT alignment of Progenesis software. More...
 
 MS_Progenesis_manual_alignment = 1001866
 Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors. More...
 
 MS_Progenesis_normalization = 1001867
 Progenesis normalization: Normalization as performed by Progenesis LC-MS. More...
 
 MS_distinct_peptide_level_q_value = 1001868
 distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry). More...
 
 MS_protein_level_q_value = 1001869
 protein-level q-value: Estimation of the q-value for proteins. More...
 
 MS_peptide_sequence_level_p_value = 1001870
 peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_protein_level_p_value = 1001871
 protein-level p-value: Estimation of the p-value for proteins. More...
 
 MS_peptide_sequence_level_e_value = 1001872
 peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_protein_level_e_value = 1001873
 protein-level e-value: Estimation of the e-value for proteins. More...
 
 MS_FDRScore_OBSOLETE = 1001874
 FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0. More...
 
 MS_modification_motif = 1001875
 modification motif: The regular expression describing the sequence motif for a modification. More...
 
 MS_modification_probability = 1001876
 modification probability: The a priori probability of a modification. More...
 
 MS_ChromaTOF_HRT_software = 1001877
 ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments. More...
 
 MS_MALDI_Solutions_Microbial_Identification = 1001878
 MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis. More...
 
 MS_offset_voltage = 1001879
 offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation. More...
 
 MS_in_source_collision_induced_dissociation = 1001880
 in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum. More...
 
 MS_mz5_format = 1001881
 mz5 format: mz5 file format, modelled after mzML. More...
 
 MS_transition_validation_attribute = 1001882
 transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate. More...
 
 MS_coefficient_of_variation = 1001883
 coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean. More...
 
 MS_signal_to_noise_ratio = 1001884
 signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal. More...
 
 MS_command_line_parameters = 1001885
 command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name. More...
 
 MS_SQID = 1001886
 SQID: Software for data analysis of peptides and proteins. More...
 
 MS_SQID_score = 1001887
 SQID:score: The SQID result 'Score'. More...
 
 MS_SQID_deltaScore = 1001888
 SQID:deltaScore: The SQID result 'deltaScore'. More...
 
 MS_SQID_protein_score = 1001889
 SQID:protein score: The SQID result 'protein score'. More...
 
 MS_Progenesis_protein_normalised_abundance = 1001890
 Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS. More...
 
 MS_Progenesis_peptide_normalised_abundance = 1001891
 Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS. More...
 
 MS_Progenesis_protein_raw_abundance = 1001892
 Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS. More...
 
 MS_Progenesis_peptide_raw_abundance = 1001893
 Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS. More...
 
 MS_Progenesis_confidence_score = 1001894
 Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS. More...
 
 MS_Progenesis_peptide_count = 1001895
 Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS. More...
 
 MS_Progenesis_feature_intensity = 1001896
 Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS. More...
 
 MS_MaxQuant_peptide_counts__unique_ = 1001897
 MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant. More...
 
 MS_MaxQuant_peptide_counts__all_ = 1001898
 MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant. More...
 
 MS_MaxQuant_peptide_counts__razor_unique_ = 1001899
 MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant. More...
 
 MS_MaxQuant_sequence_length = 1001900
 MaxQuant:sequence length: The data type sequence length produced by MaxQuant. More...
 
 MS_MaxQuant_PEP = 1001901
 MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant. More...
 
 MS_MaxQuant_LFQ_intensity = 1001902
 MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant. More...
 
 MS_MaxQuant_feature_intensity = 1001903
 MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant. More...
 
 MS_MaxQuant_MS_MS_count = 1001904
 MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant. More...
 
 MS_emPAI_value = 1001905
 emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm. More...
 
 MS_APEX_value = 1001906
 APEX value: The APEX value of protein abundance, produced from the APEX software. More...
 
 MS_retention_time_window_width = 1001907
 retention time window width: The full width of a retention time window for a chromatographic peak. More...
 
 MS_ISQ = 1001908
 ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source. More...
 
 MS_Velos_Plus = 1001909
 Velos Plus: Thermo Scientific second generation Velos. More...
 
 MS_LTQ_Orbitrap_Elite = 1001910
 LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap. More...
 
 MS_Q_Exactive = 1001911
 Q Exactive: Thermo Scientific Q Exactive. More...
 
 MS_PinPoint = 1001912
 PinPoint: Thermo Scientific PinPoint SRM analysis software. More...
 
 MS_S_lens_voltage = 1001913
 S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts. More...
 
 MS_pymzML = 1001914
 pymzML: Python module to interface mzML Data. More...
 
 MS_leukocyte_elastase = 1001915
 leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37). More...
 
 MS_proline_endopeptidase = 1001916
 proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26). More...
 
 MS_glutamyl_endopeptidase = 1001917
 glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19). More...
 
 MS_staphylococcal_protease = MS_glutamyl_endopeptidase
 staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19). More...
 
 MS_Glu_C = MS_glutamyl_endopeptidase
 Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19). More...
 
 MS_2_iodobenzoate = 1001918
 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W. More...
 
 MS_ProteomeXchange_accession_number = 1001919
 ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset. More...
 
 MS_ProteomeXchange_accession_number_version_number = 1001921
 ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number. More...
 
 MS_Digital_Object_Identifier__DOI_ = 1001922
 Digital Object Identifier (DOI): DOI unique identifier of a publication. More...
 
 MS_doi = MS_Digital_Object_Identifier__DOI_
 doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication. More...
 
 MS_external_reference_keyword = 1001923
 external reference keyword: Free text attribute that can enrich the information about an entity. More...
 
 MS_journal_article_keyword = 1001924
 journal article keyword: Keyword present in a scientific publication. More...
 
 MS_submitter_keyword = 1001925
 submitter keyword: Keyword assigned by the data submitter. More...
 
 MS_curator_keyword = 1001926
 curator keyword: Keyword assigned by a data curator. More...
 
 MS_Tranche_file_hash = 1001927
 Tranche file hash: Hash assigned by the Tranche resource to an individual file. More...
 
 MS_Tranche_project_hash = 1001928
 Tranche project hash: Hash assigned by the Tranche resource to a whole project. More...
 
 MS_PRIDE_experiment_URI = 1001929
 PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database. More...
 
 MS_PRIDE_project_URI = 1001930
 PRIDE project URI: URI that allows the access to one project in the PRIDE database. More...
 
 MS_source_interface = 1001931
 source interface: The source interface. More...
 
 MS_source_interface_model = 1001932
 source interface model: The source interface model. More...
 
 MS_source_sprayer = 1001933
 source sprayer: The source sprayer. More...
 
 MS_source_sprayer_type = 1001934
 source sprayer type: The source sprayer type. More...
 
 MS_source_sprayer_manufacturer = 1001935
 source sprayer manufacturer: The source sprayer manufacturer. More...
 
 MS_source_sprayer_model = 1001936
 source sprayer model: The source sprayer model. More...
 
 MS_sample_plate = 1001937
 sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument. More...
 
 MS_sample_plate_type = 1001938
 sample plate type: The sample plate type. More...
 
 MS_stainless_steel_plate = 1001939
 stainless steel plate: Stainless steel plate. More...
 
 MS_coated_glass_plate = 1001940
 coated glass plate: Coated glass plate. More...
 
 MS_electrospray_supply_type = 1001941
 electrospray supply type: Whether the sprayer is fed or is loaded with sample once. More...
 
 MS_static_supply_electrospray = 1001942
 static supply electrospray: The sprayer is loaded with sample once. More...
 
 MS_fed_supply_electrospray = 1001943
 fed supply electrospray: The sprayer is continuously fed with sample. More...
 
 MS_Collision_cell_exit_potential = 1001944
 Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts. More...
 
 MS_CXP = MS_Collision_cell_exit_potential
 CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts. More...
 
 MS_Pegasus_4D = 1001945
 Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer. More...
 
 MS_PEAKS_Studio = 1001946
 PEAKS Studio: PEAKS Studio software for data analysis. More...
 
 MS_PEAKS_Online = 1001947
 PEAKS Online: PEAKS Online software for high throughput data analysis. More...
 
 MS_PEAKS_Node = 1001948
 PEAKS Node: PEAKS Node software for high throughput data analysis. More...
 
 MS_BSI_software = 1001949
 BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis. More...
 
 MS_PEAKS_peptideScore = 1001950
 PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'. More...
 
 MS_PEAKS_proteinScore = 1001951
 PEAKS:proteinScore: The PEAKS protein '-10lgP Score'. More...
 
 MS_ZCore_probScore = 1001952
 ZCore:probScore: The ZCore probability score. More...
 
 MS_source_interface_manufacturer = 1001953
 source interface manufacturer: The source interface manufacturer. More...
 
 MS_acquisition_parameter = 1001954
 acquisition parameter: Parameters used in the mass spectrometry acquisition. More...
 
 MS_no_cleavage = 1001955
 no cleavage: No cleavage. More...
 
 MS_unspecific_cleavage = 1001956
 unspecific cleavage: Unspecific cleavage. More...
 
 MS______ALIV_____P_ = 1001957
 (?<=[ALIV])(?!P): Regular expression for leukocyte elastase. More...
 
 MS______HKR_P____P_ = 1001958
 (?<=[HKR]P)(?!P): Regular expression for proline endopeptidase. More...
 
 MS_______E_E_ = 1001959
 (?<=[^E]E): Regular expression for glutamyl endopeptidase. More...
 
 MS_____W_ = 1001960
 (?<=W): Regular expression for 2-iodobenzoate. More...
 
 MS_peptide_spectrum_match_scoring_algorithm = 1001961
 peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion. More...
 
 MS_Mascot_C13_counts = 1001962
 Mascot:C13 counts: C13 peaks to use in peak detection. More...
 
 MS_ProteinExtractor_Weighting = 1001963
 ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor. More...
 
 MS_ProteinScape_second_round_Mascot = 1001964
 ProteinScape:second round Mascot: Flag indicating a second round search with Mascot. More...
 
 MS_ProteinScape_second_round_Phenyx = 1001965
 ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx. More...
 
 MS_product_ion_mobility = 1001966
 product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry. More...
 
 MS_product_ion_drift_time_OBSOLETE = 1001967
 product ion drift time: The ion drift time of an MS2 product ion. More...
 
 MS_PTM_localization_PSM_level_statistic = 1001968
 PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level. More...
 
 MS_phosphoRS_score = 1001969
 phosphoRS score: phosphoRS score for PTM site location at the PSM-level. More...
 
 MS_phosphoRS_sequence_probability = 1001970
 phosphoRS sequence probability: Probability that the respective isoform is correct. More...
 
 MS_phosphoRS_site_probability = 1001971
 phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated. More...
 
 MS_PTM_scoring_algorithm_version = 1001972
 PTM scoring algorithm version: Version of the post-translational modification scoring algorithm. More...
 
 MS_DeBunker = 1001973
 DeBunker: DeBunker software. More...
 
 MS_DeBunker_score = 1001974
 DeBunker:score: Score specific to DeBunker. More...
 
 MS_delta_m_z = 1001975
 delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value. More...
 
 MS_m_z_difference = MS_delta_m_z
 m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value. More...
 
 MS_delta_M = 1001976
 delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value. More...
 
 MS_mass_difference = MS_delta_M
 mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value. More...
 
 MS_MSQuant = 1001977
 MSQuant: MSQuant software. More...
 
 MS_MSQuant_PTM_score = 1001978
 MSQuant:PTM-score: The PTM score from MSQuant software. More...
 
 MS_MaxQuant_PTM_Score = 1001979
 MaxQuant:PTM Score: The PTM score from MaxQuant software. More...
 
 MS_MaxQuant_Phospho__STY__Probabilities = 1001980
 MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software. More...
 
 MS_MaxQuant_Phospho__STY__Score_Diffs = 1001981
 MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software. More...
 
 MS_MaxQuant_P_site_localization_probability = 1001982
 MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software. More...
 
 MS_MaxQuant_PTM_Delta_Score = 1001983
 MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest). More...
 
 MS_Ascore_software = 1001984
 Ascore software: Ascore software. More...
 
 MS_Ascore = 1001985
 Ascore: A-score for PTM site location at the PSM-level. More...
 
 MS_H_Score = 1001986
 H-Score: H-Score for peptide phosphorylation site location. More...
 
 MS_vacuum_drying_MALDI_sample_preparation = 1001987
 vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method. More...
 
 MS_crushed_crystal_MALDI_sample_preparation = 1001988
 crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method. More...
 
 MS_fast_evaporation_MALDI_sample_preparation = 1001989
 fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method. More...
 
 MS_overlayer_MALDI_sample_preparation = 1001990
 overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method. More...
 
 MS_sandwich_MALDI_sample_preparation = 1001991
 sandwich MALDI sample preparation: Sandwich MALDI sample preparation method. More...
 
 MS_spin_coating_MALDI_sample_preparation = 1001992
 spin coating MALDI sample preparation: Spin coating MALDI sample preparation method. More...
 
 MS_quick_and_dirty_MALDI_sample_preparation = 1001993
 quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling. More...
 
 MS_top_hat_baseline_reduction = 1001994
 top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'. More...
 
 MS_convex_hull_baseline_reduction = 1001995
 convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures. More...
 
 MS_median_baseline_reduction = 1001996
 median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments. More...
 
 MS_wavelet_transformation_smoothing = 1001997
 wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform. More...
 
 MS_sophisticated_numerical_annotation_procedure = 1001998
 sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum. More...
 
 MS_SNAP = MS_sophisticated_numerical_annotation_procedure
 SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum. More...
 
 MS_area_normalization = 1001999
 area normalization: Normalization of areas below the curves. More...
 
 MS_LIFT = 1002000
 LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID. More...
 
 MS_MS1_label_based_raw_feature_quantitation = 1002001
 MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation. More...
 
 MS_MS1_label_based_peptide_level_quantitation = 1002002
 MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation. More...
 
 MS_MS1_label_based_protein_level_quantitation = 1002003
 MS1 label-based protein level quantitation: MS1 label-based protein level quantitation. More...
 
 MS_MS1_label_based_proteingroup_level_quantitation = 1002004
 MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation. More...
 
 MS_iRT_retention_time_normalization_standard = 1002005
 iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys. More...
 
 MS_SRM_transition_type = 1002006
 SRM transition type: The type of the transitions, e.g. target or decoy. More...
 
 MS_MRM_transition_type = MS_SRM_transition_type
 MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy. More...
 
 MS_target_SRM_transition = 1002007
 target SRM transition: A transition used to target a specific compound that may be in the sample. More...
 
 MS_target_MRM_transition = MS_target_SRM_transition
 target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample. More...
 
 MS_decoy_SRM_transition = 1002008
 decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows. More...
 
 MS_decoy_MRM_transition = MS_decoy_SRM_transition
 decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows. More...
 
 MS_isobaric_label_quantitation_analysis = 1002009
 isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow. More...
 
 MS_TMT_quantitation_analysis = 1002010
 TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow. More...
 
 MS_desorption_electrospray_ionization = 1002011
 desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure. More...
 
 MS_DESI = MS_desorption_electrospray_ionization
 DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure. More...
 
 MS_Mascot_PTM_site_assignment_confidence = 1002012
 Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score). More...
 
 MS_collision_energy_ramp_start = 1002013
 collision energy ramp start: Collision energy at the start of the collision energy ramp. More...
 
 MS_collision_energy_ramp_end = 1002014
 collision energy ramp end: Collision energy at the end of the collision energy ramp. More...
 
 MS_spectral_count_peptide_level_quantitation = 1002015
 spectral count peptide level quantitation: Spectral count peptide level quantitation. More...
 
 MS_spectral_count_protein_level_quantitation = 1002016
 spectral count protein level quantitation: Spectral count protein level quantitation. More...
 
 MS_spectral_count_proteingroup_level_quantitation = 1002017
 spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation. More...
 
 MS_MS1_label_based_analysis = 1002018
 MS1 label-based analysis: MS1 label-based analysis. More...
 
 MS_label_free_raw_feature_quantitation = 1002019
 label-free raw feature quantitation: Label-free raw feature quantitation. More...
 
 MS_label_free_peptide_level_quantitation = 1002020
 label-free peptide level quantitation: Label-free peptide level quantitation. More...
 
 MS_label_free_protein_level_quantitation = 1002021
 label-free protein level quantitation: Label-free protein level quantitation. More...
 
 MS_label_free_proteingroup_level_quantitation = 1002022
 label-free proteingroup level quantitation: Label-free proteingroup level quantitation. More...
 
 MS_MS2_tag_based_analysis = 1002023
 MS2 tag-based analysis: MS2 tag-based analysis. More...
 
 MS_MS2_tag_based_feature_level_quantitation = 1002024
 MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation. More...
 
 MS_MS2_tag_based_peptide_level_quantitation = 1002025
 MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation. More...
 
 MS_MS2_tag_based_protein_level_quantitation = 1002026
 MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation. More...
 
 MS_MS2_tag_based_proteingroup_level_quantitation = 1002027
 MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation. More...
 
 MS_nucleic_acid_base_modification = 1002028
 nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion). More...
 
 MS_original_nucleic_acid_sequence = 1002029
 original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence. More...
 
 MS_modified_nucleic_acid_sequence = 1002030
 modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence. More...
 
 MS_PASSEL_transition_group_browser_URI = 1002031
 PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment. More...
 
 MS_PeptideAtlas_dataset_URI = 1002032
 PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset. More...
 
 MS_contact_role = 1002033
 contact role: Role of the contact person. More...
 
 MS_first_author = 1002034
 first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution. More...
 
 MS_senior_author = 1002035
 senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution. More...
 
 MS_co_author = 1002036
 co-author: One of a set of authors associated with a publication or release. More...
 
 MS_dataset_submitter = 1002037
 dataset submitter: A person who submits a dataset to a repository. More...
 
 MS_unlabeled_sample = 1002038
 unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy". More...
 
 MS_light_labeled_sample = MS_unlabeled_sample
 light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy". More...
 
 MS_inlet_attribute = 1002039
 inlet attribute: Inlet properties that are associated with a value. More...
 
 MS_inlet_temperature = 1002040
 inlet temperature: The temperature of the inlet of a mass spectrometer. More...
 
 MS_source_temperature = 1002041
 source temperature: The temperature of the source of a mass spectrometer. More...
 
 MS_modulation_time = 1002042
 modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column. More...
 
 MS_ProteinProspector = 1002043
 ProteinProspector: ProteinProspector software for data acquisition and analysis. More...
 
 MS_ProteinProspector_score = 1002044
 ProteinProspector:score: The ProteinProspector result 'Score'. More...
 
 MS_ProteinProspector_expectation_value = 1002045
 ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'. More...
 
 MS_native_source_path = 1002046
 native source path: The original source path used for directory-based sources. More...
 
 MS_MS_GF = 1002047
 MS-GF: MS-GF software used to re-score the peptide-spectrum matches. More...
 
 MS_MS_GF_ = 1002048
 MS-GF+: MS-GF+ software used to analyze the spectra. More...
 
 MS_MS_GFDB = MS_MS_GF_
 MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra. More...
 
 MS_MS_GF_RawScore = 1002049
 MS-GF:RawScore: MS-GF raw score. More...
 
 MS_MS_GF_DeNovoScore = 1002050
 MS-GF:DeNovoScore: MS-GF de novo score. More...
 
 MS_MS_GF_Energy = 1002051
 MS-GF:Energy: MS-GF energy score. More...
 
 MS_MS_GF_SpecEValue = 1002052
 MS-GF:SpecEValue: MS-GF spectral E-value. More...
 
 MS_MS_GF_EValue = 1002053
 MS-GF:EValue: MS-GF E-value. More...
 
 MS_MS_GF_QValue = 1002054
 MS-GF:QValue: MS-GF Q-value. More...
 
 MS_MS_GF_PepQValue = 1002055
 MS-GF:PepQValue: MS-GF peptide-level Q-value. More...
 
 MS_MS_GF_PEP = 1002056
 MS-GF:PEP: MS-GF posterior error probability. More...
 
 MS_modification_specificity_protein_N_term = 1002057
 modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein. More...
 
 MS_modification_specificity_protein_C_term = 1002058
 modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein. More...
 
 MS_Microsoft_Excel = 1002059
 Microsoft Excel: Microsoft Excel (can be used for spectral counting). More...
 
 MS_database_UniProtKB_TrEMBL = 1002060
 database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database. More...
 
 MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE = 1002061
 decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database. More...
 
 MS_metabolic_labelling__natural_N__mainly_14N_ = 1002062
 metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N). More...
 
 MS_FindPairs = 1002063
 FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite. More...
 
 MS_peptide_consensus_RT = 1002064
 peptide consensus RT: Peptide consensus retention time. More...
 
 MS_peptide_consensus_m_z = 1002065
 peptide consensus m/z: Peptide consensus mass/charge ratio. More...
 
 MS_ratio_calculation_method = 1002066
 ratio calculation method: Method used to calculate the ratio. More...
 
 MS_protein_value__median_of_peptide_ratios = 1002067
 protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios. More...
 
 MS_metabolic_labelling__heavy_N__mainly_15N_ = 1002068
 metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N). More...
 
 MS_metabolic_labelling_purity = 1002069
 metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape. More...
 
 MS_t_test = 1002070
 t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed. More...
 
 MS_ANOVA_test = 1002071
 ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed. More...
 
 MS_p_value = 1002072
 p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was. More...
 
 MS_mzIdentML_format = 1002073
 mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'. More...
 
 MS_quantification_file_format = 1002074
 quantification file format: File format containing quantification results. More...
 
 MS_mzQuantML_format = 1002075
 mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'. More...
 
 MS_PAnalyzer = 1002076
 PAnalyzer: PAnalyzer software for getting protein evidence categories. More...
 
 MS_impact = 1002077
 impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray. More...
 
 MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE = 1002078
 ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE = 1002079
 ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before = 1002080
 ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before. More...
 
 MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After = 1002081
 ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after. More...
 
 MS_first_column_elution_time = 1002082
 first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column. More...
 
 MS_second_column_elution_time = 1002083
 second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column. More...
 
 MS_multidimensional_chromatography_modulation_description = 1002084
 multidimensional chromatography modulation description: Multidimensional chromatography modulation description. More...
 
 MS_two_dimensional_gas_chromatography_with_fixed_modulation_time = 1002085
 two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition. More...
 
 MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps = 1002086
 two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time. More...
 
 MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time = 1002087
 two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition. More...
 
 MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps = 1002088
 two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time. More...
 
 MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold = 1002089
 ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein. More...
 
 MS_Calculate_Probability_Scores = 1002090
 Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated. More...
 
 MS_ProteomeDiscoverer_Maximum_Delta_Cn = 1002091
 ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's. More...
 
 MS_Percolator_Validation_based_on = 1002092
 Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator. More...
 
 MS_search_engine_input_parameter = 1002093
 search engine input parameter: Search engine input parameter. More...
 
 MS_common_search_engine_input_parameter = 1002094
 common search engine input parameter: Search engine input parameter that is shared by more than one search engine. More...
 
 MS_Mascot_input_parameter = 1002095
 Mascot input parameter: Search engine input parameters specific to Mascot. More...
 
 MS_SEQUEST_input_parameter = 1002096
 SEQUEST input parameter: Search engine input parameters specific to SEQUEST. More...
 
 MS_Phenyx_input_parameter = 1002097
 Phenyx input parameter: Search engine input parameters specific to Phenyx. More...
 
 MS_ProteinExtractor_input_parameter = 1002098
 ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor. More...
 
 MS_OMSSA_input_parameter = 1002099
 OMSSA input parameter: Search engine input parameters specific to OMSSA. More...
 
 MS_ProteinScape_input_parameter = 1002100
 ProteinScape input parameter: Search engine input parameters specific to ProteinScape. More...
 
 MS_ProteomeDiscoverer_input_parameter = 1002101
 ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer. More...
 
 MS_software_input_parameter = 1002103
 software input parameter: Software input parameters. More...
 
 MS_common_software_input_parameter = 1002104
 common software input parameter: Software input parameter that is shared by more than one software. More...
 
 MS_software_specific_input_parameter = 1002105
 software specific input parameter: Software specific input parameter. More...
 
 MS_Scaffold_input_parameter = 1002106
 Scaffold input parameter: Search engine input parameters specific to Scaffold. More...
 
 MS_Percolator_input_parameter = 1002107
 Percolator input parameter: Search engine input parameters specific to Percolator. More...
 
 MS_higher_score_better = 1002108
 higher score better: Indicates that a higher score is better. More...
 
 MS_lower_score_better = 1002109
 lower score better: Indicates that a lower score is better. More...
 
 MS_assay_attribute = 1002110
 assay attribute: Attribute describing an assay. More...
 
 MS_assay_label_attribute = 1002111
 assay label attribute: Attribute describing an assay label. More...
 
 MS_protein_group_list_attribute = 1002112
 protein group list attribute: Attribute describing a protein group list. More...
 
 MS_protein_group_attribute = 1002113
 protein group attribute: Attribute describing a protein group. More...
 
 MS_protein_list_attribute = 1002114
 protein list attribute: Attribute describing a protein list. More...
 
 MS_peptide_consensus_list_attribute = 1002115
 peptide consensus list attribute: Attribute describing a peptide consensus list. More...
 
 MS_peptide_consensus_attribute = 1002116
 peptide consensus attribute: Attribute describing a peptide consensus. More...
 
 MS_small_molecule_list_attribute = 1002117
 small molecule list attribute: Attribute describing a small molecule list. More...
 
 MS_small_molecule_attribute = 1002118
 small molecule attribute: Attribute describing a small molecule. More...
 
 MS_small_molecule_modification_attribute = 1002119
 small molecule modification attribute: Attribute describing a small molecule modification. More...
 
 MS_experiment_name = 1002120
 experiment name: The name for identifying an experiment. More...
 
 MS_spectral_count_feature = 1002121
 spectral count feature: Dummy decribing a spectral count feature. More...
 
 MS_counts_reporting = 1002122
 counts reporting: FeatureList of spectral counts. More...
 
 MS_x_Tracker = 1002123
 x-Tracker: X-Tracker generic tool for quantitative proteomics. More...
 
 MS_ProteoSuite = 1002124
 ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data. More...
 
 MS_combined_FDRScore_OBSOLETE = 1002125
 combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools. More...
 
 MS_database_UniProtKB = 1002126
 database UniProtKB: The name of the UniProtKB knowledgebase. More...
 
 MS_identification_file_attribute = 1002127
 identification file attribute: Attribute describing an identification file. More...
 
 MS_method_file_format = 1002128
 method file format: Attribute describing a method file format. More...
 
 MS_ITRAQAnalyzer = 1002129
 ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment. More...
 
 MS_identification_file_format = 1002130
 identification file format: Attribute describing an identification file format. More...
 
 MS_TOPP_noise_filter = 1002131
 TOPP noise filter: Noise filter component of the TOPP software. More...
 
 MS_TOPP_NoiseFilterGaussian = 1002132
 TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing. More...
 
 MS_TOPP_NoiseFilterSGolay = 1002133
 TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing. More...
 
 MS_TOPP_peak_picker = 1002134
 TOPP peak picker: Peak picker component of the TOPP software. More...
 
 MS_TOPP_PeakPickerHiRes = 1002135
 TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra. More...
 
 MS_TOPP_PeakPickerWavelet = 1002136
 TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra. More...
 
 MS_TOPP_spectra_filter = 1002137
 TOPP spectra filter: Spectra filter component of the TOPP software. More...
 
 MS_TOPP_SpectraFilterBernNorm = 1002138
 TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra. More...
 
 MS_TOPP_SpectraFilterMarkerMower = 1002139
 TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks. More...
 
 MS_TOPP_SpectraFilterNLargest = 1002140
 TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra. More...
 
 MS_TOPP_SpectraFilterNormalizer = 1002141
 TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra. More...
 
 MS_TOPP_SpectraFilterParentPeakMower = 1002142
 TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra. More...
 
 MS_TOPP_SpectraFilterScaler = 1002143
 TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank. More...
 
 MS_TOPP_SpectraFilterSqrtMower = 1002144
 TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root. More...
 
 MS_TOPP_SpectraFilterThresholdMower = 1002145
 TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra. More...
 
 MS_TOPP_SpectraFilterWindowMower = 1002146
 TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum. More...
 
 MS_TOPP_map_aligner = 1002147
 TOPP map aligner: Map aligner component of the TOPP software. More...
 
 MS_TOPP_MapAlignerIdentification = 1002148
 TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications. More...
 
 MS_TOPP_MapAlignerPoseClustering = 1002149
 TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach. More...
 
 MS_TOPP_MapAlignerSpectrum = 1002150
 TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment. More...
 
 MS_numerator_data_type_attribute = 1002151
 numerator data type attribute: Attribute describing the data type of the numerator of a ratio. More...
 
 MS_denominator_data_type_attribute = 1002152
 denominator data type attribute: Attribute describing the data type of the denominator of a ratio. More...
 
 MS_protein_level_PSM_counts = 1002153
 protein level PSM counts: The number of spectra identified for this protein in spectral counting. More...
 
 MS_TOPP_DTAExtractor = 1002154
 TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format. More...
 
 MS_TOPP_IDMerger = 1002155
 TOPP IDMerger: Merges several protein/peptide identification files into one file. More...
 
 MS_TOPP_IDFileConverter = 1002156
 TOPP IDFileConverter: Converts identification engine file formats. More...
 
 MS_TOPP_SpectraMerger = 1002157
 TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks. More...
 
 MS_TOPP_MzTabExporter = 1002158
 TOPP MzTabExporter: Exports various XML formats to an mzTab file. More...
 
 MS_TOPP_MassTraceExtractor = 1002159
 TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps. More...
 
 MS_TOPP_PrecursorMassCorrector = 1002160
 TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans. More...
 
 MS_TOPP_HighResPrecursorMassCorrector = 1002161
 TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data. More...
 
 MS_TOPP_AdditiveSeries = 1002162
 TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples. More...
 
 MS_TOPP_Decharger = 1002163
 TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity. More...
 
 MS_TOPP_EICExtractor = 1002164
 TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps. More...
 
 MS_TOPP_feature_finder = 1002165
 TOPP feature finder: Feature finder component of the TOPP software. More...
 
 MS_TOPP_FeatureFinderCentroided = 1002166
 TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data. More...
 
 MS_TOPP_FeatureFinderRaw = 1002167
 TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data. More...
 
 MS_TOPP_FeatureFinderIsotopeWavelet = 1002168
 TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm. More...
 
 MS_TOPP_FeatureFinderMetabo = 1002169
 TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites. More...
 
 MS_TOPP_FeatureFinderMRM = 1002170
 TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data. More...
 
 MS_TOPP_ProteinQuantifier = 1002171
 TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps. More...
 
 MS_TOPP_ConsensusMapNormalizer = 1002172
 TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking). More...
 
 MS_TOPP_MapRTTransformer = 1002173
 TOPP MapRTTransformer: Applies retention time transformations to maps. More...
 
 MS_TOPP_feature_linker = 1002174
 TOPP feature linker: Feature linker component of the TOPP software. More...
 
 MS_TOPP_FeatureLinkerLabeled = 1002175
 TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map. More...
 
 MS_TOPP_FeatureLinkerUnlabeled = 1002176
 TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps. More...
 
 MS_TOPP_FeatureLinkerUnlabeledQT = 1002177
 TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach. More...
 
 MS_TOPP_CompNovo = 1002178
 TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine. More...
 
 MS_TOPP_CompNovoCID = 1002179
 TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode. More...
 
 MS_TOPP_software_adaptor = 1002180
 TOPP software adaptor: Software adaptor to an external program in the TOPP software. More...
 
 MS_TOPP_InspectAdapter = 1002181
 TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect. More...
 
 MS_TOPP_MascotAdapter = 1002182
 TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot. More...
 
 MS_TOPP_MascotAdapterOnline = 1002183
 TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mascot. More...
 
 MS_TOPP_OMSSAAdapter = 1002184
 TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA. More...
 
 MS_TOPP_PepNovoAdapter = 1002185
 TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo. More...
 
 MS_TOPP_XTandemAdapter = 1002186
 TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem. More...
 
 MS_TOPP_SpecLibSearcher = 1002187
 TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral library. More...
 
 MS_TOPP_ConsensusID = 1002188
 TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines. More...
 
 MS_TOPP_IDConflictResolver = 1002189
 TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications. More...
 
 MS_TOPP_IDFilter = 1002190
 TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria. More...
 
 MS_TOPP_IDMapper = 1002191
 TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features. More...
 
 MS_TOPP_IDPosteriorErrorProbability = 1002192
 TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model. More...
 
 MS_TOPP_IDRTCalibration = 1002193
 TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards. More...
 
 MS_TOPP_PeptideIndexer = 1002194
 TOPP PeptideIndexer: Refreshes the protein references for all peptide hits. More...
 
 MS_TOPP_PrecursorIonSelector = 1002195
 TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results. More...
 
 MS_TOPP_MRMMapper = 1002196
 TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML). More...
 
 MS_TOPP_OpenSwath_component = 1002197
 TOPP OpenSwath component: OpenSwath component of the TOPP software. More...
 
 MS_TOPP_OpenSwathAnalyzer = 1002198
 TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment. More...
 
 MS_TOPP_OpenSwathChromatogramExtractor = 1002199
 TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file. More...
 
 MS_TOPP_OpenSwathDecoyGenerator = 1002200
 TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML. More...
 
 MS_TOPP_OpenSwathFeatureXMLToTSV = 1002201
 TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values). More...
 
 MS_TOPP_OpenSwathRTNormalizer = 1002202
 TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space. More...
 
 MS_TOPP_ProteinInference = 1002203
 TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides. More...
 
 MS_TOPP_FalseDiscoveryRate = 1002204
 TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches. More...
 
 MS_ProteoWizard_msconvert = 1002205
 ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats. More...
 
 MS_ProteoWizard_idconvert = 1002206
 ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments. More...
 
 MS_ProteoWizard_chainsaw = 1002207
 ProteoWizard chainsaw: Filters and processes protein sequence databases. More...
 
 MS_ProteoWizard_msaccess = 1002208
 ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways. More...
 
 MS_ProteoWizard_SeeMS = 1002209
 ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats. More...
 
 MS_IsobariQ = 1002210
 IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data. More...
 
 MS_Variance_stabilizing_normalization = 1002211
 Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation. More...
 
 MS_IPTL_quantitation_analysis = 1002212
 IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric. More...
 
 MS_PAnalyzer_conclusive_protein = 1002213
 PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum). More...
 
 MS_PAnalyzer_indistinguishable_protein = 1002214
 PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum). More...
 
 MS_PAnalyzer_non_conclusive_protein = 1002215
 PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum). More...
 
 MS_PAnalyzer_ambiguous_group_member = 1002216
 PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum). More...
 
 MS_decoy_peptide = 1002217
 decoy peptide: A putative identified peptide issued from a decoy sequence database. More...
 
 MS_percent_collision_energy_ramp_start = 1002218
 percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion. More...
 
 MS_percent_collision_energy_ramp_end = 1002219
 percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion. More...
 
 MS_MRMaid = 1002220
 MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database. More...
 
 MS_MRMaid_peptide_score = 1002221
 MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM. More...
 
 MS_SRM_transition_attribute = 1002222
 SRM transition attribute: Attribute associated with a SRM transition. More...
 
 MS_precursor_ion_detection_probability = 1002223
 precursor ion detection probability: Probability of detecting precursor when parent protein is present. More...
 
 MS_product_ion_detection_probability = 1002224
 product ion detection probability: Probability of detecting product ion when precursor ion is present. More...
 
 MS_average_product_ion_intensity = 1002225
 average product ion intensity: Average value of product ion intensity in a collection of identified spectra. More...
 
 MS_product_ion_intensity_standard_deviation = 1002226
 product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra. More...
 
 MS_number_of_product_ion_observations = 1002227
 number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments. More...
 
 MS_number_of_precursor_ion_observations = 1002228
 number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments. More...
 
 MS_ProteomeDiscoverer_Mascot_Significance_Middle = 1002229
 ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides. More...
 
 MS_ProteomeDiscoverer_Mascot_Significance_High = 1002230
 ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides. More...
 
 MS_regular_expressions_for_a_GUID = 1002231
 ). More...
 
 MS_ProteomeDiscoverer_Default_FDR_calculator = 1002232
 ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID). More...
 
 MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained = 1002233
 ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration. More...
 
 MS_selected_precursor_m_z = 1002234
 selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation. More...
 
 MS_ProteoGrouper_PDH_score = 1002235
 ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores. More...
 
 MS_ProteoGrouper_PAG_score = 1002236
 ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides. More...
 
 MS_mzidLib = 1002237
 mzidLib: A library of Java routines for manipulating mzIdentML files. More...
 
 MS_mzidLib_Omssa2Mzid = 1002238
 mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML. More...
 
 MS_mzidLib_Tandem2Mzid = 1002239
 mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML. More...
 
 MS_mzidLib_Csv2Mzid = 1002240
 mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML. More...
 
 MS_mzidLib_ProteoGrouper = 1002241
 mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files. More...
 
 MS_mzidLib_Thresholder = 1002242
 mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files. More...
 
 MS_mzidLib_Perform_emPAI_on_mzid = 1002243
 mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file. More...
 
 MS_mzidLib_FalseDiscoveryRate = 1002244
 mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search. More...
 
 MS_mzidLib_Mzidentml2Csv = 1002245
 mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format. More...
 
 MS_mzidLib_CombineSearchEngines = 1002246
 mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file. More...
 
 MS_mzidLib_InsertMetaDataFromFasta = 1002247
 mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files. More...
 
 MS_SEQUEST_spscore = 1002248
 SEQUEST:spscore: The SEQUEST result 'SpScore'. More...
 
 MS_SEQUEST_sprank = 1002249
 SEQUEST:sprank: The SEQUEST result 'SpRank'. More...
 
 MS_SEQUEST_deltacnstar = 1002250
 SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'. More...
 
 MS_Comet = 1002251
 Comet: Comet open-source sequence search engine developed at the University of Washington. More...
 
 MS_Comet_xcorr = 1002252
 Comet:xcorr: The Comet result 'XCorr'. More...
 
 MS_Comet_deltacn = 1002253
 Comet:deltacn: The Comet result 'DeltaCn'. More...
 
 MS_Comet_deltacnstar = 1002254
 Comet:deltacnstar: The Comet result 'DeltaCnStar'. More...
 
 MS_Comet_spscore = 1002255
 Comet:spscore: The Comet result 'SpScore'. More...
 
 MS_Comet_sprank = 1002256
 Comet:sprank: The Comet result 'SpRank'. More...
 
 MS_Comet_expectation_value = 1002257
 Comet:expectation value: The Comet result 'Expectation value'. More...
 
 MS_Comet_matched_ions = 1002258
 Comet:matched ions: The Comet result 'Matched Ions'. More...
 
 MS_Comet_total_ions = 1002259
 Comet:total ions: The Comet result 'Total Ions'. More...
 
 MS_PSM_FDR_threshold = 1002260
 PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches. More...
 
 MS_Byonic = 1002261
 Byonic: Byonic search engine from Protein Metrics. More...
 
 MS_Byonic_Score = 1002262
 Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct. More...
 
 MS_Byonic_Delta_Score = 1002263
 Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct. More...
 
 MS_Byonic_DeltaMod_Score = 1002264
 Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct. More...
 
 MS_Byonic_PEP = 1002265
 Byonic:PEP: Byonic posterior error probability. More...
 
 MS_Byonic_Peptide_LogProb = 1002266
 Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism. More...
 
 MS_Byonic_Protein_LogProb = 1002267
 Byonic:Protein LogProb: The log p-value of the protein. More...
 
 MS_Byonic_Best_LogProb = 1002268
 Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM. More...
 
 MS_Byonic_Best_Score = 1002269
 Byonic:Best Score: Best (largest) Byonic score of a PSM. More...
 
 MS_chromatography_separation = 1002270
 chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure. More...
 
 MS_liquid_chromatography_separation = 1002271
 liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid. More...
 
 MS_gas_chromatography_separation = 1002272
 gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas. More...
 
 MS_detector_potential = 1002273
 detector potential: Detector potential difference in volts. More...
 
 MS_SQ_Detector_2 = 1002274
 SQ Detector 2: Waters quadrupole based SQ Detector 2. More...
 
 MS_Xevo_G2_S_Tof = 1002275
 Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof. More...
 
 MS_Xevo_G2_S_QTof = 1002276
 Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof. More...
 
 MS_AutoSpec_Premier = 1002277
 AutoSpec Premier: Waters AutoSpec Premier. More...
 
 MS_Pegasus_III = 1002278
 Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer. More...
 
 MS_maXis_4G = 1002279
 maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray. More...
 
 MS_compact = 1002280
 compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray. More...
 
 MS_SRM_feature_level_quantitation = 1002281
 SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation. More...
 
 MS_SRM_peptide_level_quantitation = 1002282
 SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation. More...
 
 MS_SRM_protein_level_quantitation = 1002283
 SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation. More...
 
 MS_SRM_proteingroup_level_quantitation = 1002284
 SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation. More...
 
 MS_Trans_Proteomic_Pipeline = 1002285
 Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology. More...
 
 MS_TPP = MS_Trans_Proteomic_Pipeline
 TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology. More...
 
 MS_Trans_Proteomic_Pipeline_software = 1002286
 Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline. More...
 
 MS_PeptideProphet = 1002287
 PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format. More...
 
 MS_iProphet = 1002288
 iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format. More...
 
 MS_ProteinProphet = 1002289
 ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format. More...
 
 MS_XPRESS = 1002290
 XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc. More...
 
 MS_Libra = 1002291
 Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc. More...
 
 MS_PTMProphet = 1002292
 PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites. More...
 
 MS_Bruker_Daltonics_SCION_series = 1002293
 Bruker Daltonics SCION series: Bruker Daltonics' SCION series. More...
 
 MS_Bruker_Daltonics_EVOQ_series = 1002294
 Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series. More...
 
 MS_SCION_SQ = 1002295
 SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole. More...
 
 MS_SCION_TQ = 1002296
 SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole. More...
 
 MS_EVOQ_Elite = 1002297
 EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole. More...
 
 MS_EVOQ_Qube = 1002298
 EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole. More...
 
 MS_micrOTOF_Q_III = 1002299
 micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray. More...
 
 MS_amaZon_Speed_ETD = 1002300
 amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray. More...
 
 MS_amaZon_Speed = 1002301
 amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray. More...
 
 MS_Bruker_Container_format = 1002302
 Bruker Container format: Bruker Container raw file format. More...
 
 MS_Bruker_Container_nativeID_format = 1002303
 Bruker Container nativeID format: Native identifier (UUID). More...
 
 MS_domain_range = 1002304
 domain range: Domain range of a numerical value. More...
 
 MS_value_between_0_and_1_inclusive = 1002305
 value between 0 and 1 inclusive: Value range for probabilities. More...
 
 MS_value_greater_than_zero = 1002306
 value greater than zero: Positive value range. More...
 
 MS_fragmentation_ion_type = 1002307
 fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion. More...
 
 MS_fluorescence_detector = 1002308
 fluorescence detector: A detector using a fluorescent signal after excitation with light. More...
 
 MS_Byonic__Peptide_AbsLogProb = 1002309
 Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM. More...
 
 MS_Byonic__Protein_AbsLogProb = 1002310
 Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein. More...
 
 MS_Byonic__Peptide_AbsLogProb2D = 1002311
 Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information. More...
 
 MS_MS_Numpress_linear_prediction_compression = 1002312
 MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression. More...
 
 MS_MS_Numpress_positive_integer_compression = 1002313
 MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression. More...
 
 MS_MS_Numpress_short_logged_float_compression = 1002314
 MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression. More...
 
 MS_consensus_result = 1002315
 consensus result: Indicates a consensus result from several search engine runs. More...
 
 MS_ProteomeDiscoverer_Amanda_high_confidence_threshold = 1002316
 ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score. More...
 
 MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold = 1002317
 ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score. More...
 
 MS_ProteomeDiscoverer_automatic_workload = 1002318
 ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level. More...
 
 MS_Amanda_AmandaScore = 1002319
 Amanda:AmandaScore: The Amanda score of the scoring function for a PSM. More...
 
 MS_ProteomeDiscoverer_max_differential_modifications = 1002320
 ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM. More...
 
 MS_ProteomeDiscoverer_max_equal_modifications = 1002321
 ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM. More...
 
 MS_ProteomeDiscoverer_min_peptide_length = 1002322
 ProteomeDiscoverer:min peptide length: Minimum peptide length. More...
 
 MS_ProteomeDiscoverer_max_peptide_length = 1002323
 ProteomeDiscoverer:max peptide length: Maximum peptide length. More...
 
 MS_ProteomeDiscoverer_max_number_neutral_loss = 1002324
 ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses. More...
 
 MS_ProteomeDiscoverer_max_number_neutral_loss_modifications = 1002325
 ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications. More...
 
 MS_ProteomeDiscoverer_use_flanking_ions = 1002326
 ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions. More...
 
 MS_ProteomeDiscoverer_max_number_of_same_modifs = 1002327
 ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM. More...
 
 MS_ProteomeDiscoverer_perform_deisotoping = 1002328
 ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed. More...
 
 MS_ProteomeDiscoverer_ion_settings = 1002329
 ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated. More...
 
 MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE = 1002330
 ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter. More...
 
 MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE = 1002331
 ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter. More...
 
 MS_lab_head = 1002332
 lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group. More...
 
 MS_conversion_software = 1002333
 conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process. More...
 
 MS_ProCon = 1002334
 ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML. More...
 
 MS_PRIDE_Converter2 = 1002335
 PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML. More...
 
 MS_Amanda = 1002336
 Amanda: Amanda scoring system for PSM identification. More...
 
 MS_Andromeda = 1002337
 Andromeda: Andromeda is a peptide search engine. More...
 
 MS_Andromeda_score = 1002338
 Andromeda:score: The probability based score of the Andromeda search engine. More...
 
 MS_site_global_FDR = 1002339
 site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification. More...
 
 MS_ProteomeXchange_project_tag = 1002340
 ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project. More...
 
 MS_second_pass_peptide_identification = 1002341
 second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search. More...
 
 MS_MZmine = 1002342
 MZmine: A framework for differential analysis of mass spectrometry data. More...
 
 MS_ion_stability_type_OBSOLETE = 1002343
 ion stability type: Stability type of the ion. More...
 
 MS_Maltcms = 1002344
 Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers. More...
 
 MS_PSM_level_attribute = 1002345
 PSM-level attribute: Attribute of a single peptide-spectrum match. More...
 
 MS_protein_group_level_identification_attribute = 1002346
 protein group-level identification attribute: Protein group level information. More...
 
 MS_PSM_level_identification_statistic = 1002347
 PSM-level identification statistic: Identification confidence metric for a peptide spectrum match. More...
 
 MS_protein_group_level_identification_statistic = 1002348
 protein group-level identification statistic: Identification confidence metric for a protein group. More...
 
 MS_value_greater_than_zero_but_less_than_or_equal_to_one = 1002349
 value greater than zero but less than or equal to one: Positive value range less than or equal to 1. More...
 
 MS_PSM_level_global_FDR = 1002350
 PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches. More...
 
 MS_PSM_level_local_FDR = 1002351
 PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches. More...
 
 MS_PSM_level_p_value = 1002352
 PSM-level p-value: Estimation of the p-value for peptide spectrum matches. More...
 
 MS_PSM_level_e_value = 1002353
 PSM-level e-value: Estimation of the e-value for peptide spectrum matches. More...
 
 MS_PSM_level_q_value = 1002354
 PSM-level q-value: Estimation of the q-value for peptide spectrum matches. More...
 
 MS_PSM_level_FDRScore = 1002355
 PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches. More...
 
 MS_PSM_level_combined_FDRScore = 1002356
 PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools. More...
 
 MS_PSM_level_probability = 1002357
 PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum. More...
 
 MS_search_engine_specific_peptide_sequence_level_identification_statistic = 1002358
 search engine specific peptide sequence-level identification statistic: Search engine specific distinct peptide score. More...
 
 MS_peptide_sequence_level_local_FDR = 1002359
 peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_distinct_peptide_level_FDRScore = 1002360
 distinct peptide-level FDRScore: mzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_distinct_peptide_level_combined_FDRScore = 1002361
 distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools. More...
 
 MS_peptide_sequence_level_probability = 1002362
 peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs. More...
 
 MS_search_engine_specific_score_for_proteins = 1002363
 search engine specific score for proteins: Search engine specific protein scores. More...
 
 MS_protein_level_local_FDR = 1002364
 protein-level local FDR: Estimation of the local false discovery rate of proteins. More...
 
 MS_FDRScore_for_proteins = 1002365
 FDRScore for proteins: mzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools. More...
 
 MS_combined_FDRScore_for_proteins = 1002366
 combined FDRScore for proteins: mzidLibrary Combined FDRScore for proteins. More...
 
 MS_probability_for_proteins = 1002367
 probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software. More...
 
 MS_search_engine_specific_score_for_protein_groups = 1002368
 search engine specific score for protein groups: Search engine specific protein group scores. More...
 
 MS_protein_group_level_global_FDR = 1002369
 protein group-level global FDR: Estimation of the global false discovery rate of protein groups. More...
 
 MS_protein_group_level_local_FDR = 1002370
 protein group-level local FDR: Estimation of the local false discovery rate of protein groups. More...
 
 MS_protein_group_level_p_value = 1002371
 protein group-level p-value: Estimation of the p-value for protein groups. More...
 
 MS_protein_group_level_e_value = 1002372
 protein group-level e-value: Estimation of the e-value for protein groups. More...
 
 MS_protein_group_level_q_value = 1002373
 protein group-level q-value: Estimation of the q-value for protein groups. More...
 
 MS_protein_group_level_FDRScore = 1002374
 protein group-level FDRScore: mzidLibrary FDRScore for protein groups. More...
 
 MS_protein_group_level_combined_FDRScore = 1002375
 protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools. More...
 
 MS_protein_group_level_probability = 1002376
 protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software. More...
 
 MS_ProteomeDiscoverer_Relaxed_Score_Threshold = 1002377
 ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring. More...
 
 MS_ProteomeDiscoverer_Strict_Score_Threshold = 1002378
 ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring. More...
 
 MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score = 1002379
 ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein. More...
 
 MS_false_localization_rate = 1002380
 false localization rate: Estimation of the false localization rate for modification site assignment. More...
 
 MS_MALDI_Solutions_LC_MALDI = 1002381
 MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting. More...
 
 MS_Shimadzu_MALDI_7090 = 1002382
 Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF. More...
 
 MS_SCiLS_software = 1002383
 SCiLS software: SCiLS software for data acquisition and analysis. More...
 
 MS_SCiLS_Lab = 1002384
 SCiLS Lab: SCiLS Lab software. More...
 
 MS_SCiLS_Lab_format = 1002385
 SCiLS Lab format: SCiLS Lab file format. More...
 
 MS_preprocessing_software = 1002386
 preprocessing software: Preprocessing software. More...
 
 MS_PIA = 1002387
 PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis. More...
 
 MS_PIA_XML_format = 1002388
 PIA XML format: A compilation of search engine results in the PIA XML format. More...
 
 MS_PIA_workflow_parameter = 1002389
 PIA workflow parameter: A parameter set for a single PIA analysis. More...
 
 MS_PIA_FDRScore_calculated = 1002390
 PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file. More...
 
 MS_PIA_Combined_FDRScore_calculated = 1002391
 PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation. More...
 
 MS_PIA_PSM_sets_created = 1002392
 PIA:PSM sets created: Indicates whether PSM sets were created. More...
 
 MS_PIA_used_top_identifications_for_FDR = 1002393
 PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all. More...
 
 MS_PIA_protein_score = 1002394
 PIA:protein score: The score given to a protein by any protein inference. More...
 
 MS_PIA_protein_inference = 1002395
 PIA:protein inference: The used algorithm for the protein inference using PIA. More...
 
 MS_PIA_protein_inference_filter = 1002396
 PIA:protein inference filter: A filter used by PIA for the protein inference. More...
 
 MS_PIA_protein_inference_scoring = 1002397
 PIA:protein inference scoring: The used scoring method for the protein inference using PIA. More...
 
 MS_PIA_protein_inference_used_score = 1002398
 PIA:protein inference used score: The used base score for the protein inference using PIA. More...
 
 MS_PIA_protein_inference_used_PSMs = 1002399
 PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference. More...
 
 MS_PIA_filter = 1002400
 PIA:filter: A filter used for the report generation. More...
 
 MS_leading_protein = 1002401
 leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members. More...
 
 MS_non_leading_protein = 1002402
 non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence. More...
 
 MS_group_representative = 1002403
 group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative. More...
 
 MS_count_of_identified_proteins = 1002404
 count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file. More...
 
 MS_protein_group_level_result_list_attribute = 1002405
 protein group-level result list attribute: Details describing a protein cluster. More...
 
 MS_count_of_identified_clusters = 1002406
 count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file. More...
 
 MS_cluster_identifier = 1002407
 cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides. More...
 
 MS_number_of_distinct_protein_sequences = 1002408
 number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file. More...
 
 MS_marginally_distinguished_protein = 1002409
 marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group. More...
 
 MS_Anubis = 1002410
 Anubis: Anubis software for selected reaction monitoring data. More...
 
 MS_TraML_format = 1002411
 TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'. More...
 
 MS_total_XIC_area = 1002412
 total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM). More...
 
 MS_product_background = 1002413
 product background: The background area for the quantified transition. More...
 
 MS_postprocessing_software = 1002414
 postprocessing software: Postprocessing software. More...
 
 MS_protein_group_passes_threshold = 1002415
 protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file. More...
 
 MS_Orbitrap_Fusion = 1002416
 Orbitrap Fusion: Thermo Scientific Orbitrap Fusion. More...
 
 MS_Orbitrap_Fusion_ETD = 1002417
 Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD. More...
 
 MS_TSQ_Quantiva = 1002418
 TSQ Quantiva: Thermo Scientific TSQ Quantiva MS. More...
 
 MS_TSQ_Endura = 1002419
 TSQ Endura: Thermo Scientific TSQ Endura MS. More...
 
 MS_PASSEL_experiment_URI = 1002420
 PASSEL experiment URI: URI that allows access to a PASSEL experiment. More...
 
 MS_Paragon_input_parameter = 1002421
 Paragon input parameter: Search engine input parameters specific to Paragon. More...
 
 MS_Paragon__sample_type = 1002422
 Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation. More...
 
 MS_Paragon__cysteine_alkylation = 1002423
 Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation. More...
 
 MS_Paragon__instrument_setting = 1002424
 Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument. More...
 
 MS_Paragon__search_effort = 1002425
 Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search. More...
 
 MS_Paragon__ID_focus = 1002426
 Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions. More...
 
 MS_Paragon__FDR_analysis = 1002427
 Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted. More...
 
 MS_Paragon__quantitation = 1002428
 Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted. More...
 
 MS_Paragon__background_correction = 1002429
 Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples. More...
 
 MS_Paragon__bias_correction = 1002430
 Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity. More...
 
 MS_Paragon__channel_to_use_as_denominator_in_ratios = 1002431
 Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios. More...
 
 MS_search_engine_specific_input_metadata = 1002432
 search engine specific input metadata: Search engine specific metadata that are not user-controlled settings. More...
 
 MS_Paragon__modified_data_dictionary_or_parameter_translation = 1002433
 Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result. More...
 
 MS_number_of_spectra_searched = 1002434
 number of spectra searched: Number of spectra in a search. More...
 
 MS_data_processing_start_time = 1002435
 data processing start time: The time that a data processing action was started. More...
 
 MS_Paragon__digestion = 1002436
 Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done. More...
 
 MS_number_of_decoy_sequences = 1002437
 number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used. More...
 
 MS_spectrum_identification_list_result_details = 1002438
 spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList). More...
 
 MS_final_PSM_list = 1002439
 final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult. More...
 
 MS_intermediate_PSM_list = 1002440
 intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult. More...
 
 MS_Andi_MS_format = 1002441
 Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data. More...
 
 MS_chromatograph_file_format = 1002442
 chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format. More...
 
 MS_Andi_CHROM_format = 1002443
 Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data. More...
 
 MS_6420_Triple_Quadrupole_LC_MS = 1002444
 6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. More...
 
 MS_6460_Triple_Quadrupole_LC_MS = 1002445
 6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity. More...
 
 MS_6490_Triple_Quadrupole_LC_MS = 1002446
 6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity. More...
 
 MS_Paragon_special_factor = 1002447
 Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects. More...
 
 MS_PEAKS_inChorusPeptideScore = 1002448
 PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score. More...
 
 MS_PEAKS_inChorusProteinScore = 1002449
 PEAKS:inChorusProteinScore: The PEAKS inChorus protein score. More...
 
 MS_param__b_ion_H3PO4_DEPRECATED = 1002450
 param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid. More...
 
 MS_param__y_ion_H3PO4_DEPRECATED = 1002451
 param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid. More...
 
 MS_Maui = 1002452
 Maui: The Maltcms Graphical User Interface. More...
 
 MS_No_fixed_modifications_searched = 1002453
 No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported. More...
 
 MS_No_variable_modifications_searched = 1002454
 No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported. More...
 
 MS_H2O_neutral_loss_OBSOLETE = 1002455
 H2O neutral loss: Neutral loss of water. More...
 
 MS_NH3_neutral_loss_OBSOLETE = 1002456
 NH3 neutral loss: Neutral loss of ammonia. More...
 
 MS_H3PO4_neutral_loss_OBSOLETE = 1002457
 H3PO4 neutral loss: Neutral loss of phosphoric acid. More...
 
 MS_PeptideShaker = 1002458
 PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results. More...
 
 MS_MS_Amanda_csv_format = 1002459
 MS Amanda csv format: MS Amanda csv output format. More...
 
 MS_protein_group_level_global_FNR = 1002460
 protein group-level global FNR: Estimation of the global false negative rate of protein groups. More...
 
 MS_protein_group_level_confidence = 1002461
 protein group-level confidence: Estimation of the global confidence of protein groups. More...
 
 MS_peptide_sequence_level_global_FNR = 1002462
 peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_peptide_sequence_level_global_confidence = 1002463
 peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry). More...
 
 MS_PSM_level_global_FNR = 1002464
 PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches. More...
 
 MS_PSM_level_global_confidence = 1002465
 PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches. More...
 
 MS_PeptideShaker_PSM_score = 1002466
 PeptideShaker PSM score: The probability based PeptideShaker PSM score. More...
 
 MS_PeptideShaker_PSM_confidence = 1002467
 PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence. More...
 
 MS_PeptideShaker_peptide_score = 1002468
 PeptideShaker peptide score: The probability based PeptideShaker peptide score. More...
 
 MS_PeptideShaker_peptide_confidence = 1002469
 PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence. More...
 
 MS_PeptideShaker_protein_group_score = 1002470
 PeptideShaker protein group score: The probability based PeptideShaker protein group score. More...
 
 MS_PeptideShaker_protein_group_confidence = 1002471
 PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence. More...
 
 MS_trap_type_collision_induced_dissociation = 1002472
 trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell. More...
 
 MS_ion_series_considered_in_search = 1002473
 ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine. More...
 
 MS_ProteoAnnotator_non_canonical_gene_model_score = 1002474
 ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group. More...
 
 MS_ProteoAnnotator_count_alternative_peptides = 1002475
 ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group. More...
 
 MS_ion_mobility_drift_time = 1002476
 ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated. More...
 
 MS_mean_drift_time_array = 1002477
 mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array. More...
 
 MS_mean_charge_array = 1002478
 mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum. More...
 
 MS_regular_expression = 1002479
 regular expression: Regular expression. More...
 
 MS_regular_expression_for_a_digital_object_identifier__DOI_ = 1002480
 (?:[.][0-9]+)*/(?:(?!["&\'<>])[^ \r
\v\f])+) More...
 
 MS_higher_energy_beam_type_collision_induced_dissociation = 1002481
 higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV. More...
 
 MS_statistical_threshold = 1002482
 statistical threshold: Estimated statistical threshold. More...
 
 MS_PSM_level_statistical_threshold = 1002483
 PSM-level statistical threshold: Estimated statistical threshold at PSM-level. More...
 
 MS_peptide_level_statistical_threshold = 1002484
 peptide-level statistical threshold: Estimated statistical threshold at peptide-level. More...
 
 MS_protein_level_statistical_threshold = 1002485
 protein-level statistical threshold: Estimated statistical threshold at protein-level. More...
 
 MS_protein_group_level_statistical_threshold = 1002486
 protein group-level statistical threshold: Estimated statistical threshold at protein group-level. More...
 
 MS_MassIVE_dataset_identifier = 1002487
 MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication. More...
 
 MS_MassIVE_dataset_URI = 1002488
 MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication. More...
 
 MS_special_processing = 1002489
 special processing: Details describing a special processing. More...
 
 MS_peptide_level_scoring = 1002490
 peptide-level scoring: Peptide-level scoring performed. More...
 
 MS_modification_localization_scoring = 1002491
 modification localization scoring: Modification localization scoring performed. More...
 
 MS_consensus_scoring = 1002492
 consensus scoring: Consensus multiple search engine approach performed. More...
 
 MS_sample_pre_fractionation = 1002493
 sample pre-fractionation: Sample pre-fractionation performed. More...
 
 MS_cross_linking_search = 1002494
 cross-linking search: Cross-linking search performed. More...
 
 MS_no_special_processing = 1002495
 no special processing: No special processing performed. More...
 
 MS_group_PSMs_by_sequence = 1002496
 group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications. More...
 
 MS_group_PSMs_by_sequence_with_modifications = 1002497
 group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account. More...
 
 MS_group_PSMs_by_sequence_with_modifications_and_charge = 1002498
 group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account. More...
 
 MS_peptide_level_score_OBSOLETE = 1002499
 peptide level score: Peptide level score. More...
 
 MS_peptide_passes_threshold = 1002500
 peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file. More...
 
 MS_no_PSM_threshold = 1002501
 no PSM threshold: Indicating that no PSM threshold was used. More...
 
 MS_no_peptide_level_threshold = 1002502
 no peptide-level threshold: Indicating that no peptide-level threshold was used. More...
 
 MS_PSM_is_used_for_peptide_level_scoring = 1002503
 PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring. More...
 
 MS_modification_index = 1002504
 modification index: The order of modifications to be referenced elsewhere in the document. More...
 
 MS_regular_expression_for_modification_localization_scoring = 1002505
 ) More...
 
 MS_modification_position_score = 1002506
 modification position score: Modification position score. More...
 
 MS_modification_rescoring_false_localization_rate = 1002507
 modification rescoring:false localization rate: Mod position score: false localization rate. More...
 
 MS_cross_linking_attribute = 1002508
 cross-linking attribute: Cross-linking attribute. More...
 
 MS_cross_link_donor = 1002509
 cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order. More...
 
 MS_cross_link_acceptor = 1002510
 cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order. More...
 
 MS_cross_link_spectrum_identification_item = 1002511
 cross-link spectrum identification item: Cross-linked spectrum identification item. More...
 
 MS_cross_linking_score = 1002512
 cross-linking score: Cross-linking scoring value. More...
 
 MS_molecules_per_cell = 1002513
 molecules per cell: The absolute abundance of protein in a cell. More...
 
 MS_absolute_quantitation_analysis = 1002514
 absolute quantitation analysis: Absolute quantitation analysis. More...
 
 MS_internal_peptide_reference_used = 1002515
 internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis. More...
 
 MS_internal_protein_reference_used = 1002516
 internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis. More...
 
 MS_internal_reference_abundance = 1002517
 internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis. More...
 
 MS_Progenesis_protein_group_normalised_abundance = 1002518
 Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS. More...
 
 MS_Progenesis_protein_group_raw_abundance = 1002519
 Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS. More...
 
 MS_peptide_group_ID = 1002520
 peptide group ID: Peptide group identifier for peptide-level stats. More...
 
 MS_mass_spectrometry_imaging = 1002521
 mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position. More...
 
 MS_ProteomeDiscoverer_1__Static_Terminal_Modification = 1002522
 ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational modifications (PTMs). More...
 
 MS_Q_Exactive_HF = 1002523
 Q Exactive HF: Thermo Scientific Q Exactive. More...
 
 MS_PepFinder = 1002524
 PepFinder: Thermo Scientific PepFinder BioPharma analysis software. More...
 
 MS_TSQ_8000_Evo = 1002525
 TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS. More...
 
 MS_Exactive_Plus = 1002526
 Exactive Plus: Thermo Scientific Exactive Plus MS. More...
 
 MS_instrument_specific_scan_attribute = 1002527
 instrument specific scan attribute: Instrument specific scan properties that are associated with a value. More...
 
 MS_synchronous_prefilter_selection = 1002528
 synchronous prefilter selection: Synchronous prefilter selection. More...
 
 MS_SPS = MS_synchronous_prefilter_selection
 SPS (synchronous prefilter selection): Synchronous prefilter selection. More...
 
 MS_resolution_array = 1002529
 resolution array: A data array of resolution values. More...
 
 MS_baseline_array = 1002530
 baseline array: A data array of signal baseline values (the signal in the absence of analytes). More...
 
 MS_UIMF_format = 1002531
 UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data. More...
 
 MS_UIMF_nativeID_format = 1002532
 UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger. More...
 
 MS_TripleTOF_6600 = 1002533
 TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer. More...
 
 MS_ProLuCID_xcorr = 1002534
 ProLuCID:xcorr: The ProLuCID result 'XCorr'. More...
 
 MS_ProLuCID_deltacn = 1002535
 ProLuCID:deltacn: The ProLuCID result 'DeltaCn'. More...
 
 MS_D_Score = 1002536
 D-Score: D-Score for PTM site location at the PSM-level. More...
 
 MS_MD_Score = 1002537
 MD-Score: MD-Score for PTM site location at the PSM-level. More...
 
 MS_PTM_localization_confidence_metric = 1002538
 PTM localization confidence metric: Localization confidence metric for a post translational modification (PTM). More...
 
 MS_PeptideShaker_PTM_confidence_type = 1002539
 PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizations. More...
 
 MS_PeptideShaker_PSM_confidence_type = 1002540
 PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's. More...
 
 MS_PeptideShaker_peptide_confidence_type = 1002541
 PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide identifications. More...
 
 MS_PeptideShaker_protein_confidence_type = 1002542
 PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein identifications. More...
 
 MS_xiFDR = 1002543
 xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications. More...
 
 MS_xi = 1002544
 xi: Search engine for cross-linked peptides. More...
 
 MS_xi_score = 1002545
 xi:score: The xi result 'Score'. More...
 
 MS_Skyline_mzQuantML_converter = 1002546
 Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML. More...
 
 MS_normalized_spectral_abundance_factor = 1002547
 normalized spectral abundance factor: A normalized spectral abundance factor (NSAF). More...
 
 MS_distributed_normalized_spectral_abundance_factor = 1002548
 distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor (dNSAF. More...
 
 MS_PTM_localization_distinct_peptide_level_statistic = 1002549
 PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence. More...
 
 MS_peptide_phosphoRS_score = 1002550
 peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level. More...
 
 MS_peptide_Ascore = 1002551
 peptide:Ascore: A-score for PTM site location at the peptide-level. More...
 
 MS_peptide_H_Score = 1002552
 peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level. More...
 
 MS_peptide_D_Score = 1002553
 peptide:D-Score: D-Score for PTM site location at the peptide-level. More...
 
 MS_peptide_MD_Score = 1002554
 peptide:MD-Score: MD-Score for PTM site location at the peptide-level. More...
 
 MS_PTM_localization_score_threshold = 1002555
 PTM localization score threshold: Threshold for PTM site location score. More...
 
 MS_Ascore_threshold = 1002556
 Ascore threshold: Threshold for Ascore PTM site location score. More...
 
 MS_D_Score_threshold = 1002557
 D-Score threshold: Threshold for D-score PTM site location score. More...
 
 MS_MD_Score_threshold = 1002558
 MD-Score threshold: Threshold for MD-score PTM site location score. More...
 
 MS_H_Score_threshold = 1002559
 H-Score threshold: Threshold for H-score PTM site location score. More...
 
 MS_DeBunker_score_threshold = 1002560
 DeBunker:score threshold: Threshold for DeBunker PTM site location score. More...
 
 MS_Mascot_PTM_site_assignment_confidence_threshold = 1002561
 Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence. More...
 
 MS_MSQuant_PTM_score_threshold = 1002562
 MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score. More...
 
 MS_MaxQuant_PTM_Score_threshold = 1002563
 MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score. More...
 
 MS_MaxQuant_P_site_localization_probability_threshold = 1002564
 MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probability. More...
 
 MS_MaxQuant_PTM_Delta_Score_threshold = 1002565
 MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score. More...
 
 MS_MaxQuant_Phospho__STY__Probabilities_threshold = 1002566
 MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities. More...
 
 MS_phosphoRS_score_threshold = 1002567
 phosphoRS score threshold: Threshold for phosphoRS score. More...
 
 MS_phosphoRS_site_probability_threshold = 1002568
 phosphoRS site probability threshold: Threshold for phosphoRS site probability. More...
 
 MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once = 1002569
 ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a ProteomeDiscoverer search. More...
 
 MS_sequence_multiply_subsumable_protein = 1002570
 sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group. More...
 
 MS_spectrum_multiply_subsumable_protein = 1002571
 spectrum multiply subsumable protein: A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group. More...
 
 MS_protein_detection_statistical_threshold = 1002572
 protein detection statistical threshold: Estimated statistical threshold used for protein detection. More...
 
 MS_spectrum_identification_statistical_threshold = 1002573
 spectrum identification statistical threshold: Estimated statistical threshold used for spectrum identification. More...
 
 MS_ASAPRatio = 1002574
 ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc. More...
 
 MS_Tide = 1002575
 Tide: Tide open-source sequence search program developed at the University of Washington. More...
 
 MS_Andromeda_result_file = 1002576
 Andromeda result file: Andromeda result file output format. More...
 
 MS_2000_QTRAP = 1002577
 2000 QTRAP: SCIEX 2000 QTRAP. More...
 
 MS_2500_QTRAP = 1002578
 2500 QTRAP: SCIEX 2500 QTRAP. More...
 
 MS_3500_QTRAP = 1002579
 3500 QTRAP: SCIEX 3500 QTRAP. More...
 
 MS_QTRAP_4500 = 1002580
 QTRAP 4500: SCIEX QTRAP 4500. More...
 
 MS_QTRAP_6500 = 1002581
 QTRAP 6500: SCIEX QTRAP 6500. More...
 
 MS_QTRAP_6500_ = 1002582
 QTRAP 6500+: SCIEX QTRAP 6500+. More...
 
 MS_TripleTOF_4600 = 1002583
 TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer. More...
 
 MS_TripleTOF_5600_ = 1002584
 TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer. More...
 
 MS_API_100 = 1002585
 API 100: Applied Biosystems/MDS SCIEX API 100 MS. More...
 
 MS_API_100LC = 1002586
 API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS. More...
 
 MS_API_165 = 1002587
 API 165: Applied Biosystems/MDS SCIEX API 165 MS. More...
 
 MS_API_300 = 1002588
 API 300: Applied Biosystems/MDS SCIEX API 300 MS. More...
 
 MS_API_350 = 1002589
 API 350: Applied Biosystems/MDS SCIEX API 350 MS. More...
 
 MS_API_365 = 1002590
 API 365: Applied Biosystems/MDS SCIEX API 365 MS. More...
 
 MS_Triple_Quad_3500 = 1002591
 Triple Quad 3500: SCIEX Triple Quad 3500. More...
 
 MS_Triple_Quad_4500 = 1002592
 Triple Quad 4500: SCIEX Triple Quad 4500. More...
 
 MS_Triple_Quad_5500 = 1002593
 Triple Quad 5500: SCIEX Triple Quad 5500. More...
 
 MS_Triple_Quad_6500 = 1002594
 Triple Quad 6500: SCIEX Triple Quad 6500. More...
 
 MS_Triple_Quad_6500_ = 1002595
 Triple Quad 6500+: SCIEX Triple Quad 6500+. More...
 
 MS_ProLuCID = 1002596
 ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute. More...
 
 MS_MS1_format = 1002597
 MS1 format: MS1 file format for MS1 spectral data. More...
 
 MS_DTASelect = 1002598
 DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches. More...
 
 MS_splash_key = 1002599
 splash key: The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier for chemical compounds. More...
 
 MS_PRIDE_XML = 1002600
 PRIDE XML: Internal data and submission format of the PRIDE database. More...
 
 MS_mzTab = 1002601
 mzTab: Tabular result format for proteomics and metabolomics experiments. More...
 
 MS_quantification_reagent = 1002602
 quantification reagent: Reagent used in labeled quantification methods. More...
 
 MS_ICAT_reagent = 1002603
 ICAT reagent: Isotope coded affinity tag reagent. More...
 
 MS_ICAT_heavy_reagent = 1002604
 ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label. More...
 
 MS_ICAT_light_reagent = 1002605
 ICAT light reagent: The name of the sample labelled with the light ICAT label. More...
 
 MS_ICPL_reagent = 1002606
 ICPL reagent: Isotope coded protein labeling reagent. More...
 
 MS_ICPL_reagent_0 = 1002607
 ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0. More...
 
 MS_ICPL_reagent_4 = 1002608
 ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4. More...
 
 MS_ICPL_reagent_6 = 1002609
 ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6. More...
 
 MS_ICPL_reagent_10 = 1002610
 ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10. More...
 
 MS_SILAC_reagent = 1002611
 SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent. More...
 
 MS_SILAC_heavy_reagent = 1002612
 SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label. More...
 
 MS_SILAC_medium_reagent = 1002613
 SILAC medium reagent: The name of the sample labelled with the medium SILAC label. More...
 
 MS_SILAC_light_reagent = 1002614
 SILAC light reagent: The name of the sample labelled with the light SILAC label. More...
 
 MS_TMT_reagent = 1002615
 TMT reagent: Tandem mass tag reagent. More...
 
 MS_TMT_reagent_126 = 1002616
 TMT reagent 126: The name of the sample labelled with the TMT reagent 126. More...
 
 MS_TMT_reagent_127 = 1002617
 TMT reagent 127: The name of the sample labelled with the TMT reagent 127. More...
 
 MS_TMT_reagent_128 = 1002618
 TMT reagent 128: The name of the sample labelled with the TMT reagent 128. More...
 
 MS_TMT_reagent_129 = 1002619
 TMT reagent 129: The name of the sample labelled with the TMT reagent 129. More...
 
 MS_TMT_reagent_130 = 1002620
 TMT reagent 130: The name of the sample labelled with the TMT reagent 130. More...
 
 MS_TMT_reagent_131 = 1002621
 TMT reagent 131: The name of the sample labelled with the TMT reagent 131. More...
 
 MS_iTRAQ_reagent = 1002622
 iTRAQ reagent: Isobaric tag for relative and absolute quantitation reagent. More...
 
 MS_iTRAQ_reagent_113 = 1002623
 iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113. More...
 
 MS_iTRAQ_reagent_114 = 1002624
 iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114. More...
 
 MS_iTRAQ_reagent_115 = 1002625
 iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115. More...
 
 MS_iTRAQ_reagent_116 = 1002626
 iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116. More...
 
 MS_iTRAQ_reagent_117 = 1002627
 iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117. More...
 
 MS_iTRAQ_reagent_118 = 1002628
 iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118. More...
 
 MS_iTRAQ_reagent_119 = 1002629
 iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119. More...
 
 MS_iTRAQ_reagent_121 = 1002630
 iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121. More...
 
 MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_ = 1002631
 Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy). More...
 
 MS_EThcD = MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_
 EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy). More...
 
 MS_jPOST_dataset_identifier = 1002632
 jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication. More...
 
 MS_jPOST_dataset_URI = 1002633
 jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication. More...
 
 MS_Q_Exactive_Plus = 1002634
 Q Exactive Plus: Thermo Scientific Q Exactive Plus. More...
 
 MS_proteogenomics_search = 1002635
 proteogenomics search: Proteogenomics search performed. More...
 
 MS_proteogenomics_attribute = 1002636
 proteogenomics attribute: Proteogenomics attribute. More...
 
 MS_chromosome_name = 1002637
 chromosome name: The name or number of the chromosome to which a given peptide has been mapped. More...
 
 MS_chromosome_strand = 1002638
 chromosome strand: The strand (+ or -) to which the peptide has been mapped. More...
 
 MS_peptide_start_on_chromosome_OBSOLETE = 1002639
 peptide start on chromosome: The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system. More...
 
 MS_peptide_end_on_chromosome = 1002640
 peptide end on chromosome: The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system. More...
 
 MS_peptide_exon_count = 1002641
 peptide exon count: The number of exons to which the peptide has been mapped. More...
 
 MS_peptide_exon_nucleotide_sizes = 1002642
 peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length. More...
 
 MS_peptide_start_positions_on_chromosome = 1002643
 peptide start positions on chromosome: A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome. More...
 
 MS_genome_reference_version = 1002644
 genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference. More...
 
 MS_MSDK = 1002645
 MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data. More...
 
 MS_native_spectrum_identifier_format__combined_spectra = 1002646
 native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated. More...
 
 MS_nativeID_format__combined_spectra = MS_native_spectrum_identifier_format__combined_spectra
 nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated. More...
 
 MS_Thermo_nativeID_format__combined_spectra = 1002647
 Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_Waters_nativeID_format__combined_spectra = 1002648
 Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_WIFF_nativeID_format__combined_spectra = 1002649
 WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra = 1002650
 Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_Bruker_BAF_nativeID_format__combined_spectra = 1002651
 Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_Bruker_FID_nativeID_format__combined_spectra = 1002652
 Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_multiple_peak_list_nativeID_format__combined_spectra = 1002653
 multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_single_peak_list_nativeID_format__combined_spectra = 1002654
 single peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_scan_number_only_nativeID_format__combined_spectra = 1002655
 scan number only nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_spectrum_identifier_nativeID_format__combined_spectra = 1002656
 spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_mzML_unique_identifier__combined_spectra = 1002657
 mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation. More...
 
 MS_identification_parameter = 1002658
 identification parameter: Identification parameter for the search engine run. More...
 
 MS_UniProtKB_text_sequence_format = 1002659
 UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries. More...
 
 MS_UniProtKB_XML_sequence_format = 1002660
 UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries. More...
 
 MS_Morpheus = 1002661
 Morpheus: Morpheus search engine. More...
 
 MS_Morpheus_Morpheus_score = 1002662
 Morpheus:Morpheus score: Morpheus score for PSMs. More...
 
 MS_Morpheus_summed_Morpheus_score = 1002663
 Morpheus:summed Morpheus score: Summed Morpheus score for protein groups. More...
 
 MS_interaction_score_derived_from_cross_linking = 1002664
 interaction score derived from cross-linking: Parent term for interaction scores derived from cross-linking. More...
 
 MS_regular_expression_for_interaction_scores_derived_from_cross_linking = 1002665
 )) More...
 
 MS_impact_II = 1002666
 impact II: Bruker Daltonics' impact II. More...
 
 MS_impact_HD = 1002667
 impact HD: Bruker Daltonics' impact HD. More...
 
 MS_frag__iTRAQ_4plex_reporter_ion = 1002668
 frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114. More...
 
 MS_frag__iTRAQ_8plex_reporter_ion = 1002669
 frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113. More...
 
 MS_frag__TMT_reporter_ion = 1002670
 frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N. More...
 
 MS_frag__TMT_ETD_reporter_ion = 1002671
 frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C. More...
 
 MS_no_modification_threshold = 1002672
 no modification threshold: No statistical threshold for accepting or rejecting that a modification position. More...
 
 MS_OpenXQuest = 1002673
 OpenXQuest: Cross-Linking MS search engine. More...
 
 MS_X500R_QTOF = 1002674
 X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer. More...
 
 MS_cross_linking_result_details = 1002675
 cross-linking result details: This subsection describes terms which can describe details of cross-linking results. More...
 
 MS_protein_pair_level_global_FDR = 1002676
 protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments. More...
 
 MS_residue_pair_level_global_FDR = 1002677
 residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cross-linking experiments. More...
 
 MS_supplemental_higher_energy_beam_type_collision_induced_dissociation = 1002678
 supplemental higher energy beam-type collision-induced dissociation: A supplemental collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV. More...
 
 MS_supplemental_collision_induced_dissociation = 1002679
 supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisional excitation. More...
 
 MS_supplemental_collision_energy = 1002680
 supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion. More...
 
 MS_OpenXQuest_combined_score = 1002681
 OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match. More...
 
 MS_OpenXQuest_xcorr_xlink = 1002682
 OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore. More...
 
 MS_OpenXQuest_xcorr_common = 1002683
 OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore. More...
 
 MS_OpenXQuest_match_odds = 1002684
 OpenXQuest:match-odds: OpenXQuest's match-odds subscore. More...
 
 MS_OpenXQuest_intsum = 1002685
 OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore. More...
 
 MS_OpenXQuest_wTIC = 1002686
 OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore. More...
 
 MS_analysis_attribute = 1002687
 analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis. More...
 
 MS_PTM_localization_attribute = 1002688
 PTM localization attribute: Statistic derived from a post-translational modification localization analysis. More...
 
 MS_PTM_localization_single_result_statistic = 1002689
 PTM localization single result statistic: Statistic for a single item derived from a post-translational modification localization analysis. More...
 
 MS_PTM_localization_result_list_statistic = 1002690
 PTM localization result list statistic: Statistic for all items derived from a post-translational modification localization analysis. More...
 
 MS_global_FLR = 1002691
 global FLR: Global false localization rate for all localizations in a dataset. More...
 
 MS_local_FLR_at_threshold = 1002692
 local FLR at threshold: Local false localization rate for the bottom item in list of localizations sorted from most to least confident. More...
 
 MS_identification_attribute = 1002693
 identification attribute: Attribute of an identification item in the result of mass spectrometry proteomics data analysis. More...
 
 MS_single_identification_result_attribute = 1002694
 single identification result attribute: Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis. More...
 
 MS_frag__isobaric_label_ion = 1002695
 frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact. More...
 
 MS_secondary_isotope_peak = 1002697
 secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion. More...
 
 MS_protein_cluster_identification_attribute = 1002698
 protein cluster identification attribute: An attribute of the protein cluster concept as used in mzIdentML. More...
 
 MS_result_list_attribute = 1002699
 result list attribute: General property of an entire result list. More...
 
 MS_PSM_level_result_list_attribute = 1002700
 PSM-level result list attribute: General property of the list of all PSMs. More...
 
 MS_PSM_level_result_list_statistic = 1002701
 PSM-level result list statistic: Statistic pertaining to the full list of all PSMs. More...
 
 MS_peptide_sequence_level_result_list_attribute = 1002702
 peptide sequence-level result list attribute: General property of all peptide sequences in the list. More...
 
 MS_peptide_sequence_level_result_list_statistic = 1002703
 peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the list. More...
 
 MS_protein_level_result_list_attribute = 1002704
 protein-level result list attribute: Attribute of an entire protein list. More...
 
 MS_protein_level_result_list_statistic = 1002705
 protein-level result list statistic: A statistical metric of an entire protein list. More...
 
 MS_protein_group_level_result_list_statistic = 1002706
 protein group-level result list statistic: Attrbiute of an entire list of protein groups. More...
 
 UNIMOD_unimod_root_node = 100000000
 unimod root node: The root node of the unimod modifications ontology. More...
 
 UNIMOD_Acetyl = 100000001
 Acetyl: Acetylation. More...
 
 UNIMOD_Amidated = 100000002
 Amidated: Amidation. More...
 
 UNIMOD_Biotin = 100000003
 Biotin: Biotinylation. More...
 
 UNIMOD_Carbamidomethyl = 100000004
 Carbamidomethyl: Iodoacetamide derivative. More...
 
 UNIMOD_Carbamyl = 100000005
 Carbamyl: Carbamylation. More...
 
 UNIMOD_Carboxymethyl = 100000006
 Carboxymethyl: Iodoacetic acid derivative. More...
 
 UNIMOD_Deamidated = 100000007
 Deamidated: Deamidation. More...
 
 UNIMOD_ICAT_G = 100000008
 ICAT-G: Gygi ICAT(TM) d0. More...
 
 UNIMOD_ICAT_G_2H_8_ = 100000009
 ICAT-G:2H(8): Gygi ICAT(TM) d8. More...
 
 UNIMOD_Met__Hse = 100000010
 Met->Hse: Homoserine. More...
 
 UNIMOD_Met__Hsl = 100000011
 Met->Hsl: Homoserine lactone. More...
 
 UNIMOD_ICAT_D_2H_8_ = 100000012
 ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8. More...
 
 UNIMOD_ICAT_D = 100000013
 ICAT-D: Applied Biosystems original ICAT(TM) d0. More...
 
 UNIMOD_NIPCAM = 100000017
 NIPCAM: N-isopropylcarboxamidomethyl. More...
 
 UNIMOD_PEO_Iodoacetyl_LC_Biotin = 100000020
 PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine. More...
 
 UNIMOD_Phospho = 100000021
 Phospho: Phosphorylation. More...
 
 UNIMOD_Dehydrated = 100000023
 Dehydrated: Dehydration. More...
 
 UNIMOD_Propionamide = 100000024
 Propionamide: Acrylamide adduct. More...
 
 UNIMOD_Pyridylacetyl = 100000025
 Pyridylacetyl: Pyridylacetyl. More...
 
 UNIMOD_Pyro_carbamidomethyl = 100000026
 Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus). More...
 
 UNIMOD_Glu__pyro_Glu = 100000027
 Glu->pyro-Glu: Pyro-glu from E. More...
 
 UNIMOD_Gln__pyro_Glu = 100000028
 Gln->pyro-Glu: Pyro-glu from Q. More...
 
 UNIMOD_SMA = 100000029
 SMA: N-Succinimidyl-2-morpholine acetate. More...
 
 UNIMOD_Cation_Na = 100000030
 Cation:Na: Sodium adduct. More...
 
 UNIMOD_Pyridylethyl = 100000031
 Pyridylethyl: S-pyridylethylation. More...
 
 UNIMOD_Methyl = 100000034
 Methyl: Methylation. More...
 
 UNIMOD_Oxidation = 100000035
 Oxidation: Oxidation or Hydroxylation. More...
 
 UNIMOD_Dimethyl = 100000036
 Dimethyl: Di-Methylation. More...
 
 UNIMOD_Trimethyl = 100000037
 Trimethyl: Tri-Methylation. More...
 
 UNIMOD_Methylthio = 100000039
 Methylthio: Beta-methylthiolation. More...
 
 UNIMOD_Sulfo = 100000040
 Sulfo: O-Sulfonation. More...
 
 UNIMOD_Hex = 100000041
 Hex: Hexose. More...
 
 UNIMOD_Lipoyl = 100000042
 Lipoyl: Lipoyl. More...
 
 UNIMOD_HexNAc = 100000043
 HexNAc: N-Acetylhexosamine. More...
 
 UNIMOD_Farnesyl = 100000044
 Farnesyl: Farnesylation. More...
 
 UNIMOD_Myristoyl = 100000045
 Myristoyl: Myristoylation. More...
 
 UNIMOD_PyridoxalPhosphate = 100000046
 PyridoxalPhosphate: Pyridoxal phosphate. More...
 
 UNIMOD_Palmitoyl = 100000047
 Palmitoyl: Palmitoylation. More...
 
 UNIMOD_GeranylGeranyl = 100000048
 GeranylGeranyl: Geranyl-geranyl. More...
 
 UNIMOD_Phosphopantetheine = 100000049
 Phosphopantetheine: Phosphopantetheine. More...
 
 UNIMOD_FAD = 100000050
 FAD: Flavin adenine dinucleotide. More...
 
 UNIMOD_Tripalmitate = 100000051
 Tripalmitate: N-acyl diglyceride cysteine. More...
 
 UNIMOD_Guanidinyl = 100000052
 Guanidinyl: Guanidination. More...
 
 UNIMOD_HNE = 100000053
 HNE: 4-hydroxynonenal (HNE). More...
 
 UNIMOD_Glucuronyl = 100000054
 Glucuronyl: Hexuronic acid. More...
 
 UNIMOD_Glutathione = 100000055
 Glutathione: Glutathione disulfide. More...
 
 UNIMOD_Acetyl_2H_3_ = 100000056
 Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu). More...
 
 UNIMOD_Propionyl = 100000058
 Propionyl: Propionate labeling reagent light form (N-term & K). More...
 
 UNIMOD_Propionyl_13C_3_ = 100000059
 Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K. More...
 
 UNIMOD_GIST_Quat = 100000060
 GIST-Quat: Quaternary amine labeling reagent light form (N-term & K). More...
 
 UNIMOD_GIST_Quat_2H_3_ = 100000061
 GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K. More...
 
 UNIMOD_GIST_Quat_2H_6_ = 100000062
 GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K. More...
 
 UNIMOD_GIST_Quat_2H_9_ = 100000063
 GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K. More...
 
 UNIMOD_Succinyl = 100000064
 Succinyl: Succinic anhydride labeling reagent light form (N-term & K). More...
 
 UNIMOD_Succinyl_2H_4_ = 100000065
 Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K. More...
 
 UNIMOD_Succinyl_13C_4_ = 100000066
 Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K. More...
 
 UNIMOD_Iminobiotin = 100000089
 Iminobiotin: Iminobiotinylation. More...
 
 UNIMOD_ESP = 100000090
 ESP: ESP-Tag light d0. More...
 
 UNIMOD_ESP_2H_10_ = 100000091
 ESP:2H(10): ESP-Tag heavy d10. More...
 
 UNIMOD_NHS_LC_Biotin = 100000092
 NHS-LC-Biotin: NHS-LC-Biotin. More...
 
 UNIMOD_EDT_maleimide_PEO_biotin = 100000093
 EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin. More...
 
 UNIMOD_IMID = 100000094
 IMID: IMID d0. More...
 
 UNIMOD_IMID_2H_4_ = 100000095
 IMID:2H(4): IMID d4. More...
 
 UNIMOD_Propionamide_2H_3_ = 100000097
 Propionamide:2H(3): Acrylamide d3. More...
 
 UNIMOD_ICAT_C = 100000105
 ICAT-C: Applied Biosystems cleavable ICAT(TM) light. More...
 
 UNIMOD_ICAT_C_13C_9_ = 100000106
 ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy. More...
 
 UNIMOD_FormylMet = 100000107
 FormylMet: Addition of N-formyl met. More...
 
 UNIMOD_Nethylmaleimide = 100000108
 Nethylmaleimide: N-ethylmaleimide on cysteines. More...
 
 UNIMOD_OxLysBiotinRed = 100000112
 OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced. More...
 
 UNIMOD_OxLysBiotin = 100000113
 OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide. More...
 
 UNIMOD_OxProBiotinRed = 100000114
 OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced. More...
 
 UNIMOD_OxProBiotin = 100000115
 OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide. More...
 
 UNIMOD_OxArgBiotin = 100000116
 OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide. More...
 
 UNIMOD_OxArgBiotinRed = 100000117
 OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced. More...
 
 UNIMOD_EDT_iodoacetyl_PEO_biotin = 100000118
 EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin. More...
 
 UNIMOD_IBTP = 100000119
 IBTP: Thio Ether Formation - BTP Adduct. More...
 
 UNIMOD_GG = 100000121
 GG: Ubiquitinylation residue. More...
 
 UNIMOD_Formyl = 100000122
 Formyl: Formylation. More...
 
 UNIMOD_ICAT_H = 100000123
 ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine. More...
 
 UNIMOD_ICAT_H_13C_6_ = 100000124
 ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine. More...
 
 UNIMOD_Thioacyl = 100000126
 Thioacyl: 3-sulfanylpropanoyl. More...
 
 UNIMOD_Fluoro = 100000127
 Fluoro: Fluorination. More...
 
 UNIMOD_Fluorescein = 100000128
 Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR). More...
 
 UNIMOD_Iodo = 100000129
 Iodo: Iodination. More...
 
 UNIMOD_Diiodo = 100000130
 Diiodo: Di-Iodination. More...
 
 UNIMOD_Triiodo = 100000131
 Triiodo: Tri-Iodination. More...
 
 UNIMOD_Myristoleyl = 100000134
 Myristoleyl: (cis-delta 5)-tetradecaenoyl. More...
 
 UNIMOD_Myristoyl_Delta_H__4_ = 100000135
 Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl. More...
 
 UNIMOD_Benzoyl = 100000136
 Benzoyl: Labeling reagent light form (N-term & K). More...
 
 UNIMOD_Hex_5_HexNAc_2_ = 100000137
 Hex(5)HexNAc(2): N-linked glycan core. More...
 
 UNIMOD_Dansyl = 100000139
 Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl. More...
 
 UNIMOD_a_type_ion = 100000140
 a-type-ion: ISD a-series (C-Term). More...
 
 UNIMOD_Amidine = 100000141
 Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate. More...
 
 UNIMOD_HexNAc_1_dHex_1_ = 100000142
 HexNAc(1)dHex(1): HexNAc1dHex1. More...
 
 UNIMOD_HexNAc_2_ = 100000143
 HexNAc(2): HexNAc2. More...
 
 UNIMOD_Hex_3_ = 100000144
 Hex(3): Hex3. More...
 
 UNIMOD_HexNAc_1_dHex_2_ = 100000145
 HexNAc(1)dHex(2): HexNAc1dHex2. More...
 
 UNIMOD_Hex_1_HexNAc_1_dHex_1_ = 100000146
 Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1. More...
 
 UNIMOD_HexNAc_2_dHex_1_ = 100000147
 HexNAc(2)dHex(1): HexNAc2dHex1. More...
 
 UNIMOD_Hex_1_HexNAc_2_ = 100000148
 Hex(1)HexNAc(2): Hex1HexNAc2. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_1_ = 100000149
 Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1. More...
 
 UNIMOD_HexNAc_2_dHex_2_ = 100000150
 HexNAc(2)dHex(2): HexNAc2dHex2. More...
 
 UNIMOD_Hex_1_HexNAc_2_Pent_1_ = 100000151
 Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1. More...
 
 UNIMOD_Hex_1_HexNAc_2_dHex_1_ = 100000152
 Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1. More...
 
 UNIMOD_Hex_2_HexNAc_2_ = 100000153
 Hex(2)HexNAc(2): Hex2HexNAc2. More...
 
 UNIMOD_Hex_3_HexNAc_1_Pent_1_ = 100000154
 Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1. More...
 
 UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_ = 100000155
 Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1. More...
 
 UNIMOD_Hex_1_HexNAc_2_dHex_2_ = 100000156
 Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2. More...
 
 UNIMOD_Hex_2_HexNAc_2_Pent_1_ = 100000157
 Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1. More...
 
 UNIMOD_Hex_2_HexNAc_2_dHex_1_ = 100000158
 Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1. More...
 
 UNIMOD_Hex_3_HexNAc_2_ = 100000159
 Hex(3)HexNAc(2): Hex3HexNAc2. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_2_ = 100000160
 Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2. More...
 
 UNIMOD_Hex_3_HexNAc_2_Phos_1_ = 100000161
 Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos. More...
 
 UNIMOD_Delta_S__1_Se_1_ = 100000162
 Delta:S(-1)Se(1): Selenium replaces sulfur. More...
 
 UNIMOD_Delta_H_1_N__1_18O_1_ = 100000170
 Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling. More...
 
 UNIMOD_NBS_13C_6_ = 100000171
 NBS:13C(6): Shimadzu NBS-13C. More...
 
 UNIMOD_NBS = 100000172
 NBS: Shimadzu NBS-12C. More...
 
 UNIMOD_BHT = 100000176
 BHT: Michael addition of BHT quinone methide to Cysteine and Lysine. More...
 
 UNIMOD_DAET = 100000178
 DAET: Phosphorylation to amine thiol. More...
 
 UNIMOD_Label_13C_9_ = 100000184
 Label:13C(9): 13C(9) Silac label. More...
 
 UNIMOD_Label_13C_9__Phospho = 100000185
 Label:13C(9)+Phospho: C13 label (Phosphotyrosine). More...
 
 UNIMOD_HPG = 100000186
 HPG: Hydroxyphenylglyoxal arginine. More...
 
 UNIMOD_2HPG = 100000187
 2HPG: Bis(hydroxphenylglyoxal) arginine. More...
 
 UNIMOD_Label_13C_6_ = 100000188
 Label:13C(6): 13C(6) Silac label. More...
 
 UNIMOD_Label_18O_2_ = 100000193
 Label:18O(2): O18 label at both C-terminal oxygens. More...
 
 UNIMOD_AccQTag = 100000194
 AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate. More...
 
 UNIMOD_QAT = 100000195
 QAT: APTA-d0. More...
 
 UNIMOD_QAT_2H_3_ = 100000196
 QAT:2H(3): APTA d3. More...
 
 UNIMOD_EQAT = 100000197
 EQAT: EAPTA d0. More...
 
 UNIMOD_EQAT_2H_5_ = 100000198
 EQAT:2H(5): EAPTA d5. More...
 
 UNIMOD_Dimethyl_2H_4_ = 100000199
 Dimethyl:2H(4): DiMethyl-CHD2. More...
 
 UNIMOD_Ethanedithiol = 100000200
 Ethanedithiol: EDT. More...
 
 UNIMOD_Delta_H_6_C_6_O_1_ = 100000205
 Delta:H(6)C(6)O(1): Acrolein addition +94. More...
 
 UNIMOD_Delta_H_4_C_3_O_1_ = 100000206
 Delta:H(4)C(3)O(1): Acrolein addition +56. More...
 
 UNIMOD_Delta_H_2_C_3_ = 100000207
 Delta:H(2)C(3): Acrolein addition +38. More...
 
 UNIMOD_Delta_H_4_C_6_ = 100000208
 Delta:H(4)C(6): Acrolein addition +76. More...
 
 UNIMOD_Delta_H_8_C_6_O_2_ = 100000209
 Delta:H(8)C(6)O(2): Acrolein addition +112. More...
 
 UNIMOD_NEIAA = 100000211
 NEIAA: N-ethyl iodoacetamide-d0. More...
 
 UNIMOD_NEIAA_2H_5_ = 100000212
 NEIAA:2H(5): N-ethyl iodoacetamide-d5. More...
 
 UNIMOD_ADP_Ribosyl = 100000213
 ADP-Ribosyl: ADP Ribose addition. More...
 
 UNIMOD_iTRAQ4plex = 100000214
 iTRAQ4plex: Representative mass and accurate mass for 116 & 117. More...
 
 UNIMOD_IGBP = 100000243
 IGBP: Light IDBEST tag for quantitation. More...
 
 UNIMOD_Crotonaldehyde = 100000253
 Crotonaldehyde: Crotonaldehyde. More...
 
 UNIMOD_Delta_H_2_C_2_ = 100000254
 Delta:H(2)C(2): Acetaldehyde +26. More...
 
 UNIMOD_Delta_H_4_C_2_ = 100000255
 Delta:H(4)C(2): Acetaldehyde +28. More...
 
 UNIMOD_Delta_H_4_C_3_ = 100000256
 Delta:H(4)C(3): Propionaldehyde +40. More...
 
 UNIMOD_Label_18O_1_ = 100000258
 Label:18O(1): O18 Labeling. More...
 
 UNIMOD_Label_13C_6_15N_2_ = 100000259
 Label:13C(6)15N(2): 13C(6) 15N(2) Silac label. More...
 
 UNIMOD_Thiophospho = 100000260
 Thiophospho: Thiophosphorylation. More...
 
 UNIMOD_SPITC = 100000261
 SPITC: 4-sulfophenyl isothiocyanate. More...
 
 UNIMOD_Label_2H_3_ = 100000262
 Label:2H(3): Trideuteration. More...
 
 UNIMOD_PET = 100000264
 PET: Phosphorylation to pyridyl thiol. More...
 
 UNIMOD_Label_13C_6_15N_4_ = 100000267
 Label:13C(6)15N(4): 13C(6) 15N(4) Silac label. More...
 
 UNIMOD_Label_13C_5_15N_1_ = 100000268
 Label:13C(5)15N(1): 13C(5) 15N(1) Silac label. More...
 
 UNIMOD_Label_13C_9_15N_1_ = 100000269
 Label:13C(9)15N(1): 13C(9) 15N(1) Silac label. More...
 
 UNIMOD_Cytopiloyne = 100000270
 Cytopiloyne: Nucleophilic addtion to cytopiloyne. More...
 
 UNIMOD_Cytopiloyne_water = 100000271
 Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O. More...
 
 UNIMOD_CAF = 100000272
 CAF: Sulfonation of N-terminus. More...
 
 UNIMOD_Xlink_SSD = 100000273
 Xlink:SSD: Covalent modification of lysine by cross-linking reagent. More...
 
 UNIMOD_Nitrosyl = 100000275
 Nitrosyl: S-nitrosylation. More...
 
 UNIMOD_AEBS = 100000276
 AEBS: Aminoethylbenzenesulfonylation. More...
 
 UNIMOD_Ethanolyl = 100000278
 Ethanolyl: Ethanolation. More...
 
 UNIMOD_Ethyl = 100000280
 Ethyl: Ethylation. More...
 
 UNIMOD_CoenzymeA = 100000281
 CoenzymeA: Cysteine modified Coenzyme A. More...
 
 UNIMOD_Methyl_2H_2_ = 100000284
 Methyl:2H(2): Deuterium Methylation of Lysine. More...
 
 UNIMOD_SulfanilicAcid = 100000285
 SulfanilicAcid: Light Sulfanilic Acid (SA) C12. More...
 
 UNIMOD_SulfanilicAcid_13C_6_ = 100000286
 SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13. More...
 
 UNIMOD_Trp__Oxolactone = 100000288
 Trp->Oxolactone: Tryptophan oxidation to oxolactone. More...
 
 UNIMOD_Biotin_PEO_Amine = 100000289
 Biotin-PEO-Amine: Biotin polyethyleneoxide amine. More...
 
 UNIMOD_Biotin_HPDP = 100000290
 Biotin-HPDP: Pierce EZ-Link Biotin-HPDP. More...
 
 UNIMOD_Delta_Hg_1_ = 100000291
 Delta:Hg(1): Mercury Mercaptan. More...
 
 UNIMOD_IodoU_AMP = 100000292
 IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y. More...
 
 UNIMOD_CAMthiopropanoyl = 100000293
 CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl. More...
 
 UNIMOD_IED_Biotin = 100000294
 IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine. More...
 
 UNIMOD_dHex = 100000295
 dHex: Fucose. More...
 
 UNIMOD_Methyl_2H_3_ = 100000298
 Methyl:2H(3): Deuterated methyl ester. More...
 
 UNIMOD_Carboxy = 100000299
 Carboxy: Carboxylation. More...
 
 UNIMOD_Bromobimane = 100000301
 Bromobimane: Monobromobimane derivative. More...
 
 UNIMOD_Menadione = 100000302
 Menadione: Menadione quinone derivative. More...
 
 UNIMOD_DeStreak = 100000303
 DeStreak: Cysteine mercaptoethanol. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_ = 100000305
 dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_4_ = 100000307
 dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_ = 100000308
 dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary. More...
 
 UNIMOD_Hex_3_HexNAc_4_ = 100000309
 Hex(3)HexNAc(4): Biantennary (-2 galactose). More...
 
 UNIMOD_Hex_4_HexNAc_4_ = 100000310
 Hex(4)HexNAc(4): Biantennary (-1 galactose). More...
 
 UNIMOD_Hex_5_HexNAc_4_ = 100000311
 Hex(5)HexNAc(4): Biantennary. More...
 
 UNIMOD_Cysteinyl = 100000312
 Cysteinyl: Cysteinylation. More...
 
 UNIMOD_Lys_loss = 100000313
 Lys-loss: Loss of C-terminal K from Heavy Chain of MAb. More...
 
 UNIMOD_Nmethylmaleimide = 100000314
 Nmethylmaleimide: Nmethylmaleimide. More...
 
 UNIMOD_DimethylpyrroleAdduct = 100000316
 DimethylpyrroleAdduct: 2,5-dimethypyrrole. More...
 
 UNIMOD_Delta_H_2_C_5_ = 100000318
 Delta:H(2)C(5): MDA adduct +62. More...
 
 UNIMOD_Delta_H_2_C_3_O_1_ = 100000319
 Delta:H(2)C(3)O(1): MDA adduct +54. More...
 
 UNIMOD_Nethylmaleimide_water = 100000320
 Nethylmaleimide+water: Nethylmaleimidehydrolysis. More...
 
 UNIMOD_Xlink_B10621 = 100000323
 Xlink:B10621: Bis-N-I-sulfonerahodamine. More...
 
 UNIMOD_DTBP = 100000324
 DTBP: Dimethyl 3,3\'-dithiobispropionimidate. More...
 
 UNIMOD_FP_Biotin = 100000325
 FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide. More...
 
 UNIMOD_Delta_H_4_C_2_O__1_S_1_ = 100000327
 Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine. More...
 
 UNIMOD_Methyl_2H_3_13C_1_ = 100000329
 Methyl:2H(3)13C(1): Monomethylation. More...
 
 UNIMOD_Dimethyl_2H_6_13C_2_ = 100000330
 Dimethyl:2H(6)13C(2): Dimethylation. More...
 
 UNIMOD_Thiophos_S_S_biotin = 100000332
 Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP. More...
 
 UNIMOD_Can_FP_biotin = 100000333
 Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate. More...
 
 UNIMOD_HNE_Delta_H_2_ = 100000335
 HNE+Delta:H(2): Reduced 4-Hydroxynonenal. More...
 
 UNIMOD_Methylamine = 100000337
 Methylamine: Michael addition with methylamine. More...
 
 UNIMOD_Bromo = 100000340
 Bromo: Bromination. More...
 
 UNIMOD_Amino = 100000342
 Amino: Tyrosine oxidation to 2-aminotyrosine. More...
 
 UNIMOD_Argbiotinhydrazide = 100000343
 Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide. More...
 
 UNIMOD_Arg__GluSA = 100000344
 Arg->GluSA: Arginine oxidation to glutamic semialdehyde. More...
 
 UNIMOD_Trioxidation = 100000345
 Trioxidation: Cysteine oxidation to cysteic acid. More...
 
 UNIMOD_His__Asn = 100000348
 His->Asn: His->Asn substitution. More...
 
 UNIMOD_His__Asp = 100000349
 His->Asp: His->Asp substitution. More...
 
 UNIMOD_Trp__Hydroxykynurenin = 100000350
 Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin. More...
 
 UNIMOD_Trp__Kynurenin = 100000351
 Trp->Kynurenin: Tryptophan oxidation to kynurenin. More...
 
 UNIMOD_Lys__Allysine = 100000352
 Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde. More...
 
 UNIMOD_Lysbiotinhydrazide = 100000353
 Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide. More...
 
 UNIMOD_Nitro = 100000354
 Nitro: Oxidation to nitro. More...
 
 UNIMOD_probiotinhydrazide = 100000357
 probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide. More...
 
 UNIMOD_Pro__pyro_Glu = 100000359
 Pro->pyro-Glu: Proline oxidation to pyroglutamic acid. More...
 
 UNIMOD_Pro__Pyrrolidinone = 100000360
 Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone. More...
 
 UNIMOD_Thrbiotinhydrazide = 100000361
 Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide. More...
 
 UNIMOD_Diisopropylphosphate = 100000362
 Diisopropylphosphate: O-Diisopropylphosphorylation. More...
 
 UNIMOD_Isopropylphospho = 100000363
 Isopropylphospho: O-Isopropylphosphorylation. More...
 
 UNIMOD_ICPL_13C_6_ = 100000364
 ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form. More...
 
 UNIMOD_ICPL = 100000365
 ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form. More...
 
 UNIMOD_Deamidated_18O_1_ = 100000366
 Deamidated:18O(1): Deamidation in presence of O18. More...
 
 UNIMOD_Cys__Dha = 100000368
 Cys->Dha: Dehydroalanine (from Cysteine). More...
 
 UNIMOD_Pro__Pyrrolidone = 100000369
 Pro->Pyrrolidone: Pyrrolidone from Proline. More...
 
 UNIMOD_HMVK = 100000371
 HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine. More...
 
 UNIMOD_Arg__Orn = 100000372
 Arg->Orn: Ornithine from Arginine. More...
 
 UNIMOD_Dehydro = 100000374
 Dehydro: Half of a disulfide bridge. More...
 
 UNIMOD_Diphthamide = 100000375
 Diphthamide: Diphthamide. More...
 
 UNIMOD_Hydroxyfarnesyl = 100000376
 Hydroxyfarnesyl: Hydroxyfarnesyl. More...
 
 UNIMOD_Diacylglycerol = 100000377
 Diacylglycerol: Diacylglycerol. More...
 
 UNIMOD_Carboxyethyl = 100000378
 Carboxyethyl: Carboxyethyl. More...
 
 UNIMOD_Hypusine = 100000379
 Hypusine: Hypusine. More...
 
 UNIMOD_Retinylidene = 100000380
 Retinylidene: Retinal. More...
 
 UNIMOD_Lys__AminoadipicAcid = 100000381
 Lys->AminoadipicAcid: Alpha-amino adipic acid. More...
 
 UNIMOD_Cys__PyruvicAcid = 100000382
 Cys->PyruvicAcid: Pyruvic acid from N-term cys. More...
 
 UNIMOD_Ammonia_loss = 100000385
 Ammonia-loss: Loss of ammonia. More...
 
 UNIMOD_Phycocyanobilin = 100000387
 Phycocyanobilin: Phycocyanobilin. More...
 
 UNIMOD_Phycoerythrobilin = 100000388
 Phycoerythrobilin: Phycoerythrobilin. More...
 
 UNIMOD_Phytochromobilin = 100000389
 Phytochromobilin: Phytochromobilin. More...
 
 UNIMOD_Heme = 100000390
 Heme: Heme. More...
 
 UNIMOD_Molybdopterin = 100000391
 Molybdopterin: Molybdopterin. More...
 
 UNIMOD_Quinone = 100000392
 Quinone: Quinone. More...
 
 UNIMOD_Glucosylgalactosyl = 100000393
 Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine. More...
 
 UNIMOD_GPIanchor = 100000394
 GPIanchor: Glycosylphosphatidylinositol. More...
 
 UNIMOD_PhosphoribosyldephosphoCoA = 100000395
 PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A. More...
 
 UNIMOD_GlycerylPE = 100000396
 GlycerylPE: Glycerylphosphorylethanolamine. More...
 
 UNIMOD_Triiodothyronine = 100000397
 Triiodothyronine: Triiodo. More...
 
 UNIMOD_Thyroxine = 100000398
 Thyroxine: Tetraiodo. More...
 
 UNIMOD_Tyr__Dha = 100000400
 Tyr->Dha: Dehydroalanine (from Tyrosine). More...
 
 UNIMOD_Didehydro = 100000401
 Didehydro: 2-amino-3-oxo-butanoic_acid. More...
 
 UNIMOD_Cys__Oxoalanine = 100000402
 Cys->Oxoalanine: Oxoalanine. More...
 
 UNIMOD_Ser__LacticAcid = 100000403
 Ser->LacticAcid: Lactic acid from N-term Ser. More...
 
 UNIMOD_Phosphoadenosine = 100000405
 Phosphoadenosine: AMP. More...
 
 UNIMOD_Hydroxycinnamyl = 100000407
 Hydroxycinnamyl: Hydroxycinnamyl. More...
 
 UNIMOD_Glycosyl = 100000408
 Glycosyl: Glycosyl-L-hydroxyproline. More...
 
 UNIMOD_FMNH = 100000409
 FMNH: Flavin mononucleotide. More...
 
 UNIMOD_Archaeol = 100000410
 Archaeol: S-diphytanylglycerol diether. More...
 
 UNIMOD_Phenylisocyanate = 100000411
 Phenylisocyanate: Phenyl isocyanate. More...
 
 UNIMOD_Phenylisocyanate_2H_5_ = 100000412
 Phenylisocyanate:2H(5): D5-phenyl isocyanate. More...
 
 UNIMOD_Phosphoguanosine = 100000413
 Phosphoguanosine: Phospho-guanosine. More...
 
 UNIMOD_Hydroxymethyl = 100000414
 Hydroxymethyl: Hydroxymethyl. More...
 
 UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_ = 100000415
 MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide). More...
 
 UNIMOD_Dipyrrolylmethanemethyl = 100000416
 Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl. More...
 
 UNIMOD_PhosphoUridine = 100000417
 PhosphoUridine: Uridine phosphodiester. More...
 
 UNIMOD_Glycerophospho = 100000419
 Glycerophospho: Glycerophospho. More...
 
 UNIMOD_Carboxy__Thiocarboxy = 100000420
 Carboxy->Thiocarboxy: Thiocarboxylic acid. More...
 
 UNIMOD_Sulfide = 100000421
 Sulfide: Persulfide. More...
 
 UNIMOD_PyruvicAcidIminyl = 100000422
 PyruvicAcidIminyl: N-pyruvic acid 2-iminyl. More...
 
 UNIMOD_Delta_Se_1_ = 100000423
 Delta:Se(1): Selenyl. More...
 
 UNIMOD_MolybdopterinGD = 100000424
 MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide). More...
 
 UNIMOD_Dioxidation = 100000425
 Dioxidation: Dihydroxy. More...
 
 UNIMOD_Octanoyl = 100000426
 Octanoyl: Octanoyl. More...
 
 UNIMOD_PhosphoHexNAc = 100000428
 PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl. More...
 
 UNIMOD_PhosphoHex = 100000429
 PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl. More...
 
 UNIMOD_Palmitoleyl = 100000431
 Palmitoleyl: Palmitoleyl. More...
 
 UNIMOD_Cholesterol = 100000432
 Cholesterol: Cholesterol ester. More...
 
 UNIMOD_Didehydroretinylidene = 100000433
 Didehydroretinylidene: 3,4-didehydroretinylidene. More...
 
 UNIMOD_CHDH = 100000434
 CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester. More...
 
 UNIMOD_Methylpyrroline = 100000435
 Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl. More...
 
 UNIMOD_Hydroxyheme = 100000436
 Hydroxyheme: Hydroxyheme. More...
 
 UNIMOD_MicrocinC7 = 100000437
 MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine. More...
 
 UNIMOD_Cyano = 100000438
 Cyano: Cyano. More...
 
 UNIMOD_Diironsubcluster = 100000439
 Diironsubcluster: Hydrogenase diiron subcluster. More...
 
 UNIMOD_Amidino = 100000440
 Amidino: Amidino. More...
 
 UNIMOD_FMN = 100000442
 FMN: O3-(riboflavin phosphoryl). More...
 
 UNIMOD_FMNC = 100000443
 FMNC: S-(4a-FMN). More...
 
 UNIMOD_CuSMo = 100000444
 CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide. More...
 
 UNIMOD_Hydroxytrimethyl = 100000445
 Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl. More...
 
 UNIMOD_Deoxy = 100000447
 Deoxy: Reduction. More...
 
 UNIMOD_Microcin = 100000448
 Microcin: Microcin E492 siderophore ester from serine. More...
 
 UNIMOD_Decanoyl = 100000449
 Decanoyl: Lipid. More...
 
 UNIMOD_Glu = 100000450
 Glu: Monoglutamyl. More...
 
 UNIMOD_GluGlu = 100000451
 GluGlu: Diglutamyl. More...
 
 UNIMOD_GluGluGlu = 100000452
 GluGluGlu: Triglutamyl. More...
 
 UNIMOD_GluGluGluGlu = 100000453
 GluGluGluGlu: Tetraglutamyl. More...
 
 UNIMOD_HexN = 100000454
 HexN: Hexosamine. More...
 
 UNIMOD_Xlink_DMP_s = 100000455
 Xlink:DMP-s: One end of crosslink attached, one end free. More...
 
 UNIMOD_Xlink_DMP = 100000456
 Xlink:DMP: Both ends of crosslink attached to same peptide. More...
 
 UNIMOD_NDA = 100000457
 NDA: Naphthalene-2,3-dicarboxaldehyde. More...
 
 UNIMOD_SPITC_13C_6_ = 100000464
 SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13). More...
 
 UNIMOD_AEC_MAEC = 100000472
 AEC-MAEC: Aminoethylcysteine. More...
 
 UNIMOD_TMAB = 100000476
 TMAB: 4-trimethyllammoniumbutyryl-. More...
 
 UNIMOD_TMAB_2H_9_ = 100000477
 TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-. More...
 
 UNIMOD_FTC = 100000478
 FTC: Fluorescein-5-thiosemicarbazide. More...
 
 UNIMOD_Label_2H_4_ = 100000481
 Label:2H(4): 4,4,5,5-D4 Lysine. More...
 
 UNIMOD_DHP = 100000488
 DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines. More...
 
 UNIMOD_Hep = 100000490
 Hep: Heptose. More...
 
 UNIMOD_BADGE = 100000493
 BADGE: Bisphenol A diglycidyl ether derivative. More...
 
 UNIMOD_CyDye_Cy3 = 100000494
 CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye. More...
 
 UNIMOD_CyDye_Cy5 = 100000495
 CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye. More...
 
 UNIMOD_BHTOH = 100000498
 BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K. More...
 
 UNIMOD_IGBP_13C_2_ = 100000499
 IGBP:13C(2): Heavy IDBEST tag for quantitation. More...
 
 UNIMOD_Nmethylmaleimide_water = 100000500
 Nmethylmaleimide+water: Nmethylmaleimidehydrolysis. More...
 
 UNIMOD_PyMIC = 100000501
 PyMIC: 3-methyl-2-pyridyl isocyanate. More...
 
 UNIMOD_LG_lactam_K = 100000503
 LG-lactam-K: Levuglandinyl - lysine lactam adduct. More...
 
 UNIMOD_LG_Hlactam_K = 100000504
 LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct. More...
 
 UNIMOD_LG_lactam_R = 100000505
 LG-lactam-R: Levuglandinyl - arginine lactam adduct. More...
 
 UNIMOD_LG_Hlactam_R = 100000506
 LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct. More...
 
 UNIMOD_Dimethyl_2H_4_13C_2_ = 100000510
 Dimethyl:2H(4)13C(2): DiMethyl-C13HD2. More...
 
 UNIMOD_Hex_2_ = 100000512
 Hex(2): Lactosylation. More...
 
 UNIMOD_C8_QAT = 100000513
 C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium. More...
 
 UNIMOD_PropylNAGthiazoline = 100000514
 PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline. More...
 
 UNIMOD_FNEM = 100000515
 FNEM: Fluorescein-5-maleimide. More...
 
 UNIMOD_Diethyl = 100000518
 Diethyl: Diethylation, analogous to Dimethylation. More...
 
 UNIMOD_BisANS = 100000519
 BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid. More...
 
 UNIMOD_Piperidine = 100000520
 Piperidine: Piperidination. More...
 
 UNIMOD_Maleimide_PEO2_Biotin = 100000522
 Maleimide-PEO2-Biotin: Maleimide-Biotin. More...
 
 UNIMOD_Sulfo_NHS_LC_LC_Biotin = 100000523
 Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC. More...
 
 UNIMOD_CLIP_TRAQ_2 = 100000525
 CLIP_TRAQ_2: CLIP_TRAQ_2. More...
 
 UNIMOD_Dethiomethyl = 100000526
 Dethiomethyl: Prompt loss of side chain from oxidised Met. More...
 
 UNIMOD_Methyl_Deamidated = 100000528
 Methyl+Deamidated: Deamidation followed by a methylation. More...
 
 UNIMOD_Delta_H_5_C_2_ = 100000529
 Delta:H(5)C(2): Dimethylation of proline residue. More...
 
 UNIMOD_Cation_K = 100000530
 Cation:K: Replacement of proton by potassium. More...
 
 UNIMOD_Cation_Cu_I_ = 100000531
 Cation:Cu[I]: Replacement of proton by copper. More...
 
 UNIMOD_iTRAQ4plex114 = 100000532
 iTRAQ4plex114: Accurate mass for 114. More...
 
 UNIMOD_iTRAQ4plex115 = 100000533
 iTRAQ4plex115: Accurate mass for 115. More...
 
 UNIMOD_Dibromo = 100000534
 Dibromo: Dibromo. More...
 
 UNIMOD_LRGG = 100000535
 LRGG: Ubiquitination. More...
 
 UNIMOD_CLIP_TRAQ_3 = 100000536
 CLIP_TRAQ_3: CLIP_TRAQ_3. More...
 
 UNIMOD_CLIP_TRAQ_4 = 100000537
 CLIP_TRAQ_4: CLIP_TRAQ_4. More...
 
 UNIMOD_Biotin_Cayman_10141 = 100000538
 Biotin:Cayman-10141: Was 15dB-biotin. More...
 
 UNIMOD_Biotin_Cayman_10013 = 100000539
 Biotin:Cayman-10013: Was PGA1-biotin. More...
 
 UNIMOD_Ala__Ser = 100000540
 Ala->Ser: Ala->Ser substitution. More...
 
 UNIMOD_Ala__Thr = 100000541
 Ala->Thr: Ala->Thr substitution. More...
 
 UNIMOD_Ala__Asp = 100000542
 Ala->Asp: Ala->Asp substitution. More...
 
 UNIMOD_Ala__Pro = 100000543
 Ala->Pro: Ala->Pro substitution. More...
 
 UNIMOD_Ala__Gly = 100000544
 Ala->Gly: Ala->Gly substitution. More...
 
 UNIMOD_Ala__Glu = 100000545
 Ala->Glu: Ala->Glu substitution. More...
 
 UNIMOD_Ala__Val = 100000546
 Ala->Val: Ala->Val substitution. More...
 
 UNIMOD_Cys__Phe = 100000547
 Cys->Phe: Cys->Phe substitution. More...
 
 UNIMOD_Cys__Ser = 100000548
 Cys->Ser: Cys->Ser substitution. More...
 
 UNIMOD_Cys__Trp = 100000549
 Cys->Trp: Cys->Trp substitution. More...
 
 UNIMOD_Cys__Tyr = 100000550
 Cys->Tyr: Cys->Tyr substitution. More...
 
 UNIMOD_Cys__Arg = 100000551
 Cys->Arg: Cys->Arg substitution. More...
 
 UNIMOD_Cys__Gly = 100000552
 Cys->Gly: Cys->Gly substitution. More...
 
 UNIMOD_Asp__Ala = 100000553
 Asp->Ala: Asp->Ala substitution. More...
 
 UNIMOD_Asp__His = 100000554
 Asp->His: Asp->His substitution. More...
 
 UNIMOD_Asp__Asn = 100000555
 Asp->Asn: Asp->Asn substitution. More...
 
 UNIMOD_Asp__Gly = 100000556
 Asp->Gly: Asp->Gly substitution. More...
 
 UNIMOD_Asp__Tyr = 100000557
 Asp->Tyr: Asp->Tyr substitution. More...
 
 UNIMOD_Asp__Glu = 100000558
 Asp->Glu: Asp->Glu substitution. More...
 
 UNIMOD_Asp__Val = 100000559
 Asp->Val: Asp->Val substitution. More...
 
 UNIMOD_Glu__Ala = 100000560
 Glu->Ala: Glu->Ala substitution. More...
 
 UNIMOD_Glu__Gln = 100000561
 Glu->Gln: Glu->Gln substitution. More...
 
 UNIMOD_Glu__Asp = 100000562
 Glu->Asp: Glu->Asp substitution. More...
 
 UNIMOD_Glu__Lys = 100000563
 Glu->Lys: Glu->Lys substitution. More...
 
 UNIMOD_Glu__Gly = 100000564
 Glu->Gly: Glu->Gly substitution. More...
 
 UNIMOD_Glu__Val = 100000565
 Glu->Val: Glu->Val substitution. More...
 
 UNIMOD_Phe__Ser = 100000566
 Phe->Ser: Phe->Ser substitution. More...
 
 UNIMOD_Phe__Cys = 100000567
 Phe->Cys: Phe->Cys substitution. More...
 
 UNIMOD_Phe__Xle = 100000568
 Phe->Xle: Phe->Leu/Ile substitution. More...
 
 UNIMOD_Phe__Tyr = 100000569
 Phe->Tyr: Phe->Tyr substitution. More...
 
 UNIMOD_Phe__Val = 100000570
 Phe->Val: Phe->Val substitution. More...
 
 UNIMOD_Gly__Ala = 100000571
 Gly->Ala: Gly->Ala substitution. More...
 
 UNIMOD_Gly__Ser = 100000572
 Gly->Ser: Gly->Ser substitution. More...
 
 UNIMOD_Gly__Trp = 100000573
 Gly->Trp: Gly->Trp substitution. More...
 
 UNIMOD_Gly__Glu = 100000574
 Gly->Glu: Gly->Glu substitution. More...
 
 UNIMOD_Gly__Val = 100000575
 Gly->Val: Gly->Val substitution. More...
 
 UNIMOD_Gly__Asp = 100000576
 Gly->Asp: Gly->Asp substitution. More...
 
 UNIMOD_Gly__Cys = 100000577
 Gly->Cys: Gly->Cys substitution. More...
 
 UNIMOD_Gly__Arg = 100000578
 Gly->Arg: Gly->Arg substitution. More...
 
 UNIMOD_His__Pro = 100000580
 His->Pro: His->Pro substitution. More...
 
 UNIMOD_His__Tyr = 100000581
 His->Tyr: His->Tyr substitution. More...
 
 UNIMOD_His__Gln = 100000582
 His->Gln: His->Gln substitution. More...
 
 UNIMOD_His__Arg = 100000584
 His->Arg: His->Arg substitution. More...
 
 UNIMOD_His__Xle = 100000585
 His->Xle: His->Leu/Ile substitution. More...
 
 UNIMOD_Xle__Thr = 100000588
 Xle->Thr: Leu/Ile->Thr substitution. More...
 
 UNIMOD_Xle__Asn = 100000589
 Xle->Asn: Leu/Ile->Asn substitution. More...
 
 UNIMOD_Xle__Lys = 100000590
 Xle->Lys: Leu/Ile->Lys substitution. More...
 
 UNIMOD_Lys__Thr = 100000594
 Lys->Thr: Lys->Thr substitution. More...
 
 UNIMOD_Lys__Asn = 100000595
 Lys->Asn: Lys->Asn substitution. More...
 
 UNIMOD_Lys__Glu = 100000596
 Lys->Glu: Lys->Glu substitution. More...
 
 UNIMOD_Lys__Gln = 100000597
 Lys->Gln: Lys->Gln substitution. More...
 
 UNIMOD_Lys__Met = 100000598
 Lys->Met: Lys->Met substitution. More...
 
 UNIMOD_Lys__Arg = 100000599
 Lys->Arg: Lys->Arg substitution. More...
 
 UNIMOD_Lys__Xle = 100000600
 Lys->Xle: Lys->Leu/Ile substitution. More...
 
 UNIMOD_Xle__Ser = 100000601
 Xle->Ser: Leu/Ile->Ser substitution. More...
 
 UNIMOD_Xle__Phe = 100000602
 Xle->Phe: Leu/Ile->Phe substitution. More...
 
 UNIMOD_Xle__Trp = 100000603
 Xle->Trp: Leu/Ile->Trp substitution. More...
 
 UNIMOD_Xle__Pro = 100000604
 Xle->Pro: Leu/Ile->Pro substitution. More...
 
 UNIMOD_Xle__Val = 100000605
 Xle->Val: Leu/Ile->Val substitution. More...
 
 UNIMOD_Xle__His = 100000606
 Xle->His: Leu/Ile->His substitution. More...
 
 UNIMOD_Xle__Gln = 100000607
 Xle->Gln: Leu/Ile->Gln substitution. More...
 
 UNIMOD_Xle__Met = 100000608
 Xle->Met: Leu/Ile->Met substitution. More...
 
 UNIMOD_Xle__Arg = 100000609
 Xle->Arg: Leu/Ile->Arg substitution. More...
 
 UNIMOD_Met__Thr = 100000610
 Met->Thr: Met->Thr substitution. More...
 
 UNIMOD_Met__Arg = 100000611
 Met->Arg: Met->Arg substitution. More...
 
 UNIMOD_Met__Lys = 100000613
 Met->Lys: Met->Lys substitution. More...
 
 UNIMOD_Met__Xle = 100000614
 Met->Xle: Met->Leu/Ile substitution. More...
 
 UNIMOD_Met__Val = 100000615
 Met->Val: Met->Val substitution. More...
 
 UNIMOD_Asn__Ser = 100000616
 Asn->Ser: Asn->Ser substitution. More...
 
 UNIMOD_Asn__Thr = 100000617
 Asn->Thr: Asn->Thr substitution. More...
 
 UNIMOD_Asn__Lys = 100000618
 Asn->Lys: Asn->Lys substitution. More...
 
 UNIMOD_Asn__Tyr = 100000619
 Asn->Tyr: Asn->Tyr substitution. More...
 
 UNIMOD_Asn__His = 100000620
 Asn->His: Asn->His substitution. More...
 
 UNIMOD_Asn__Asp = 100000621
 Asn->Asp: Asn->Asp substitution. More...
 
 UNIMOD_Asn__Xle = 100000622
 Asn->Xle: Asn->Leu/Ile substitution. More...
 
 UNIMOD_Pro__Ser = 100000623
 Pro->Ser: Pro->Ser substitution. More...
 
 UNIMOD_Pro__Ala = 100000624
 Pro->Ala: Pro->Ala substitution. More...
 
 UNIMOD_Pro__His = 100000625
 Pro->His: Pro->His substitution. More...
 
 UNIMOD_Pro__Gln = 100000626
 Pro->Gln: Pro->Gln substitution. More...
 
 UNIMOD_Pro__Thr = 100000627
 Pro->Thr: Pro->Thr substitution. More...
 
 UNIMOD_Pro__Arg = 100000628
 Pro->Arg: Pro->Arg substitution. More...
 
 UNIMOD_Pro__Xle = 100000629
 Pro->Xle: Pro->Leu/Ile substitution. More...
 
 UNIMOD_Gln__Pro = 100000630
 Gln->Pro: Gln->Pro substitution. More...
 
 UNIMOD_Gln__Lys = 100000631
 Gln->Lys: Gln->Lys substitution. More...
 
 UNIMOD_Gln__Glu = 100000632
 Gln->Glu: Gln->Glu substitution. More...
 
 UNIMOD_Gln__His = 100000633
 Gln->His: Gln->His substitution. More...
 
 UNIMOD_Gln__Arg = 100000634
 Gln->Arg: Gln->Arg substitution. More...
 
 UNIMOD_Gln__Xle = 100000635
 Gln->Xle: Gln->Leu/Ile substitution. More...
 
 UNIMOD_Arg__Ser = 100000636
 Arg->Ser: Arg->Ser substitution. More...
 
 UNIMOD_Arg__Trp = 100000637
 Arg->Trp: Arg->Trp substitution. More...
 
 UNIMOD_Arg__Thr = 100000638
 Arg->Thr: Arg->Thr substitution. More...
 
 UNIMOD_Arg__Pro = 100000639
 Arg->Pro: Arg->Pro substitution. More...
 
 UNIMOD_Arg__Lys = 100000640
 Arg->Lys: Arg->Lys substitution. More...
 
 UNIMOD_Arg__His = 100000641
 Arg->His: Arg->His substitution. More...
 
 UNIMOD_Arg__Gln = 100000642
 Arg->Gln: Arg->Gln substitution. More...
 
 UNIMOD_Arg__Met = 100000643
 Arg->Met: Arg->Met substitution. More...
 
 UNIMOD_Arg__Cys = 100000644
 Arg->Cys: Arg->Cys substitution. More...
 
 UNIMOD_Arg__Xle = 100000645
 Arg->Xle: Arg->Leu/Ile substitution. More...
 
 UNIMOD_Arg__Gly = 100000646
 Arg->Gly: Arg->Gly substitution. More...
 
 UNIMOD_Ser__Phe = 100000647
 Ser->Phe: Ser->Phe substitution. More...
 
 UNIMOD_Ser__Ala = 100000648
 Ser->Ala: Ser->Ala substitution. More...
 
 UNIMOD_Ser__Trp = 100000649
 Ser->Trp: Ser->Trp substitution. More...
 
 UNIMOD_Ser__Thr = 100000650
 Ser->Thr: Ser->Thr substitution. More...
 
 UNIMOD_Ser__Asn = 100000651
 Ser->Asn: Ser->Asn substitution. More...
 
 UNIMOD_Ser__Pro = 100000652
 Ser->Pro: Ser->Pro substitution. More...
 
 UNIMOD_Ser__Tyr = 100000653
 Ser->Tyr: Ser->Tyr substitution. More...
 
 UNIMOD_Ser__Cys = 100000654
 Ser->Cys: Ser->Cys substitution. More...
 
 UNIMOD_Ser__Arg = 100000655
 Ser->Arg: Ser->Arg substitution. More...
 
 UNIMOD_Ser__Xle = 100000656
 Ser->Xle: Ser->Leu/Ile substitution. More...
 
 UNIMOD_Ser__Gly = 100000657
 Ser->Gly: Ser->Gly substitution. More...
 
 UNIMOD_Thr__Ser = 100000658
 Thr->Ser: Thr->Ser substitution. More...
 
 UNIMOD_Thr__Ala = 100000659
 Thr->Ala: Thr->Ala substitution. More...
 
 UNIMOD_Thr__Asn = 100000660
 Thr->Asn: Thr->Asn substitution. More...
 
 UNIMOD_Thr__Lys = 100000661
 Thr->Lys: Thr->Lys substitution. More...
 
 UNIMOD_Thr__Pro = 100000662
 Thr->Pro: Thr->Pro substitution. More...
 
 UNIMOD_Thr__Met = 100000663
 Thr->Met: Thr->Met substitution. More...
 
 UNIMOD_Thr__Xle = 100000664
 Thr->Xle: Thr->Leu/Ile substitution. More...
 
 UNIMOD_Thr__Arg = 100000665
 Thr->Arg: Thr->Arg substitution. More...
 
 UNIMOD_Val__Phe = 100000666
 Val->Phe: Val->Phe substitution. More...
 
 UNIMOD_Val__Ala = 100000667
 Val->Ala: Val->Ala substitution. More...
 
 UNIMOD_Val__Glu = 100000668
 Val->Glu: Val->Glu substitution. More...
 
 UNIMOD_Val__Met = 100000669
 Val->Met: Val->Met substitution. More...
 
 UNIMOD_Val__Asp = 100000670
 Val->Asp: Val->Asp substitution. More...
 
 UNIMOD_Val__Xle = 100000671
 Val->Xle: Val->Leu/Ile substitution. More...
 
 UNIMOD_Val__Gly = 100000672
 Val->Gly: Val->Gly substitution. More...
 
 UNIMOD_Trp__Ser = 100000673
 Trp->Ser: Trp->Ser substitution. More...
 
 UNIMOD_Trp__Cys = 100000674
 Trp->Cys: Trp->Cys substitution. More...
 
 UNIMOD_Trp__Arg = 100000675
 Trp->Arg: Trp->Arg substitution. More...
 
 UNIMOD_Trp__Gly = 100000676
 Trp->Gly: Trp->Gly substitution. More...
 
 UNIMOD_Trp__Xle = 100000677
 Trp->Xle: Trp->Leu/Ile substitution. More...
 
 UNIMOD_Tyr__Phe = 100000678
 Tyr->Phe: Tyr->Phe substitution. More...
 
 UNIMOD_Tyr__Ser = 100000679
 Tyr->Ser: Tyr->Ser substitution. More...
 
 UNIMOD_Tyr__Asn = 100000680
 Tyr->Asn: Tyr->Asn substitution. More...
 
 UNIMOD_Tyr__His = 100000681
 Tyr->His: Tyr->His substitution. More...
 
 UNIMOD_Tyr__Asp = 100000682
 Tyr->Asp: Tyr->Asp substitution. More...
 
 UNIMOD_Tyr__Cys = 100000683
 Tyr->Cys: Tyr->Cys substitution. More...
 
 UNIMOD_BDMAPP = 100000684
 BDMAPP: Mass Defect Tag on lysine e-amino. More...
 
 UNIMOD_NA_LNO2 = 100000685
 NA-LNO2: Nitroalkylation by Nitro Linoleic Acid. More...
 
 UNIMOD_NA_OA_NO2 = 100000686
 NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid. More...
 
 UNIMOD_ICPL_2H_4_ = 100000687
 ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form. More...
 
 UNIMOD_Label_13C_6_15N_1_ = 100000695
 Label:13C(6)15N(1): 13C(6) 15N(1) Silac label. More...
 
 UNIMOD_Label_2H_9_13C_6_15N_2_ = 100000696
 Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label. More...
 
 UNIMOD_NIC = 100000697
 NIC: Nicotinic Acid. More...
 
 UNIMOD_dNIC = 100000698
 dNIC: Deuterated Nicotinic Acid. More...
 
 UNIMOD_HNE_Delta_H_2_O = 100000720
 HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal. More...
 
 UNIMOD_4_ONE = 100000721
 4-ONE: 4-Oxononenal (ONE). More...
 
 UNIMOD_O_Dimethylphosphate = 100000723
 O-Dimethylphosphate: O-Dimethylphosphorylation. More...
 
 UNIMOD_O_Methylphosphate = 100000724
 O-Methylphosphate: O-Methylphosphorylation. More...
 
 UNIMOD_Diethylphosphate = 100000725
 Diethylphosphate: O-Diethylphosphorylation. More...
 
 UNIMOD_Ethylphosphate = 100000726
 Ethylphosphate: O-Ethylphosphorylation. More...
 
 UNIMOD_O_pinacolylmethylphosphonate = 100000727
 O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation. More...
 
 UNIMOD_Methylphosphonate = 100000728
 Methylphosphonate: Methylphosphonylation. More...
 
 UNIMOD_O_Isopropylmethylphosphonate = 100000729
 O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation. More...
 
 UNIMOD_iTRAQ8plex = 100000730
 iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117. More...
 
 UNIMOD_iTRAQ8plex_13C_6_15N_2_ = 100000731
 iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121. More...
 
 UNIMOD_Ethanolamine = 100000734
 Ethanolamine: Carboxyl modification with ethanolamine. More...
 
 UNIMOD_DTT_ST = 100000735
 DTT_ST: Dithiothreitol (DTT). More...
 
 UNIMOD_DTT_C = 100000736
 DTT_C: Dithiothreitol (DTT) on Cys. More...
 
 UNIMOD_TMT6plex = 100000737
 TMT6plex: Sixplex Tandem Mass Tag®. More...
 
 UNIMOD_TMT2plex = 100000738
 TMT2plex: Duplex Tandem Mass Tag®. More...
 
 UNIMOD_TMT = 100000739
 TMT: Native Tandem Mass Tag®. More...
 
 UNIMOD_ExacTagThiol = 100000740
 ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex. More...
 
 UNIMOD_ExacTagAmine = 100000741
 ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex. More...
 
 UNIMOD_4_ONE_Delta_H__2_O__1_ = 100000743
 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct. More...
 
 UNIMOD_NO_SMX_SEMD = 100000744
 NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct. More...
 
 UNIMOD_NO_SMX_SMCT = 100000745
 NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct. More...
 
 UNIMOD_NO_SMX_SIMD = 100000746
 NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct. More...
 
 UNIMOD_Malonyl = 100000747
 Malonyl: Malonylation of C and S residues. More...
 
 UNIMOD_3sulfo = 100000748
 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester. More...
 
 UNIMOD_trifluoro = 100000750
 trifluoro: Trifluoroleucine replacement of leucine. More...
 
 UNIMOD_TNBS = 100000751
 TNBS: Tri nitro benzene. More...
 
 UNIMOD_IDEnT = 100000762
 IDEnT: Isotope Distribution Encoded Tag. More...
 
 UNIMOD_DTT_ST_2H_6_ = 100000763
 DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines. More...
 
 UNIMOD_DTT_C_2H_6_ = 100000764
 DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines. More...
 
 UNIMOD_Met_loss = 100000765
 Met-loss: Removal of initiator methionine from protein N-terminus. More...
 
 UNIMOD_Met_loss_Acetyl = 100000766
 Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus. More...
 
 UNIMOD_Menadione_HQ = 100000767
 Menadione-HQ: Menadione hydroquinone derivative. More...
 
 UNIMOD_Methyl_Acetyl_2H_3_ = 100000768
 Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy. More...
 
 UNIMOD_lapachenole = 100000771
 lapachenole: Lapachenole photochemically added to cysteine. More...
 
 UNIMOD_Label_13C_5_ = 100000772
 Label:13C(5): 13C(5) Silac label. More...
 
 UNIMOD_maleimide = 100000773
 maleimide: Maleimide. More...
 
 UNIMOD_Biotin_phenacyl = 100000774
 Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide. More...
 
 UNIMOD_Carboxymethyl_13C_2_ = 100000775
 Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label. More...
 
 UNIMOD_NEM_2H_5_ = 100000776
 NEM:2H(5): D5 N-ethylmaleimide on cysteines. More...
 
 UNIMOD_AEC_MAEC_2H_4_ = 100000792
 AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T. More...
 
 UNIMOD_Hex_1_HexNAc_1_ = 100000793
 Hex(1)HexNAc(1): Hex1HexNAc1. More...
 
 UNIMOD_Label_13C_6__GG = 100000799
 Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue. More...
 
 UNIMOD_Biotin_Thermo_21345 = 100000800
 Biotin:Thermo-21345: Was PentylamineBiotin. More...
 
 UNIMOD_Pentylamine = 100000801
 Pentylamine: Labeling transglutaminase substrate on glutamine side chain. More...
 
 UNIMOD_Biotin_Thermo_21360 = 100000811
 Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide. More...
 
 UNIMOD_Cy3b_maleimide = 100000821
 Cy3b-maleimide: Fluorescent dye that labels cysteines. More...
 
 UNIMOD_Gly_loss_Amide = 100000822
 Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus. More...
 
 UNIMOD_BMOE = 100000824
 BMOE: Addition of BMOE crosslinker. More...
 
 UNIMOD_DFDNB = 100000825
 DFDNB: Addition of DFDNB crosslinker. More...
 
 UNIMOD_TMPP_Ac = 100000827
 TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative. More...
 
 UNIMOD_Dihydroxyimidazolidine = 100000830
 Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct. More...
 
 UNIMOD_Label_2H_4__Acetyl = 100000834
 Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine. More...
 
 UNIMOD_Label_13C_6__Acetyl = 100000835
 Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label. More...
 
 UNIMOD_Label_13C_6_15N_2__Acetyl = 100000836
 Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label. More...
 
 UNIMOD_Arg__Npo = 100000837
 Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine. More...
 
 UNIMOD_EQIGG = 100000846
 EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion. More...
 
 UNIMOD_Arg2PG = 100000848
 Arg2PG: Adduct of phenylglyoxal with Arg. More...
 
 UNIMOD_cGMP = 100000849
 cGMP: S-guanylation. More...
 
 UNIMOD_cGMP_RMP_loss = 100000851
 cGMP+RMP-loss: S-guanylation-2. More...
 
 UNIMOD_Label_2H_4__GG = 100000853
 Label:2H(4)+GG: Ubiquitination 2H4 lysine. More...
 
 UNIMOD_MG_H1 = 100000859
 MG-H1: Methylglyoxal-derived hydroimidazolone. More...
 
 UNIMOD_G_H1 = 100000860
 G-H1: Glyoxal-derived hydroimiadazolone. More...
 
 UNIMOD_ZGB = 100000861
 ZGB: NHS ester linked Green Fluorescent Bodipy Dye. More...
 
 UNIMOD_Label_13C_1_2H_3_ = 100000862
 Label:13C(1)2H(3): SILAC. More...
 
 UNIMOD_Label_13C_6_15N_2__GG = 100000864
 Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly. More...
 
 UNIMOD_ICPL_13C_6_2H_4_ = 100000866
 ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form. More...
 
 UNIMOD_QEQTGG = 100000876
 QEQTGG: SUMOylation by SUMO-1. More...
 
 UNIMOD_QQQTGG = 100000877
 QQQTGG: SUMOylation by SUMO-2/3. More...
 
 UNIMOD_Bodipy = 100000878
 Bodipy: Bodipy modifications onto cysteine. More...
 
 UNIMOD_Biotin_Thermo_21325 = 100000884
 Biotin:Thermo-21325: Was ChromoBiotin. More...
 
 UNIMOD_Label_13C_1_2H_3__Oxidation = 100000885
 Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label. More...
 
 UNIMOD_HydroxymethylOP = 100000886
 HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate. More...
 
 UNIMOD_MDCC = 100000887
 MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253). More...
 
 UNIMOD_mTRAQ = 100000888
 mTRAQ: MTRAQ light. More...
 
 UNIMOD_mTRAQ_13C_3_15N_1_ = 100000889
 mTRAQ:13C(3)15N(1): MTRAQ medium. More...
 
 UNIMOD_DyLight_maleimide = 100000890
 DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins. More...
 
 UNIMOD_Methyl_PEO12_Maleimide = 100000891
 Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide. More...
 
 UNIMOD_CarbamidomethylDTT = 100000893
 CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine. More...
 
 UNIMOD_CarboxymethylDTT = 100000894
 CarboxymethylDTT: Carboxymethylated DTT modification of cysteine. More...
 
 UNIMOD_Biotin_PEG_PRA = 100000895
 Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne. More...
 
 UNIMOD_Met__Aha = 100000896
 Met->Aha: Methionine replacement by azido homoalanine. More...
 
 UNIMOD_Label_15N_4_ = 100000897
 Label:15N(4): SILAC 15N(4). More...
 
 UNIMOD_pyrophospho = 100000898
 pyrophospho: Pyrophosphorylation of Ser/Thr. More...
 
 UNIMOD_Met__Hpg = 100000899
 Met->Hpg: Methionine replacement by homopropargylglycine. More...
 
 UNIMOD_4AcAllylGal = 100000901
 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine. More...
 
 UNIMOD_DimethylArsino = 100000902
 DimethylArsino: Reaction with dimethylarsinous (AsIII) acid. More...
 
 UNIMOD_Lys__CamCys = 100000903
 Lys->CamCys: Lys->Cys substitution and carbamidomethylation. More...
 
 UNIMOD_Phe__CamCys = 100000904
 Phe->CamCys: Phe->Cys substitution and carbamidomethylation. More...
 
 UNIMOD_Leu__MetOx = 100000905
 Leu->MetOx: Leu->Met substitution and sulfoxidation. More...
 
 UNIMOD_Lys__MetOx = 100000906
 Lys->MetOx: Lys->Met substitution and sulfoxidation. More...
 
 UNIMOD_Galactosyl = 100000907
 Galactosyl: Gluconoylation. More...
 
 UNIMOD_SMCC_maleimide = 100000908
 SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine. More...
 
 UNIMOD_Bacillosamine = 100000910
 Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose. More...
 
 UNIMOD_MTSL = 100000911
 MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL). More...
 
 UNIMOD_HNE_BAHAH = 100000912
 HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced. More...
 
 UNIMOD_Methylmalonylation = 100000914
 Methylmalonylation: Methylmalonylation on Serine. More...
 
 UNIMOD_Ethoxyformyl = 100000915
 Ethoxyformyl: Ethoxyformylation. More...
 
 UNIMOD_Label_13C_4_15N_2__GG = 100000923
 Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly. More...
 
 UNIMOD_ethylamino = 100000926
 ethylamino: Ethyl amino. More...
 
 UNIMOD_MercaptoEthanol = 100000928
 MercaptoEthanol: 2-OH-ethyl thio-Ser. More...
 
 UNIMOD_Ethyl_Deamidated = 100000931
 Ethyl+Deamidated: Deamidation followed by esterification with ethanol. More...
 
 UNIMOD_VFQQQTGG = 100000932
 VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage). More...
 
 UNIMOD_VIEVYQEQTGG = 100000933
 VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage). More...
 
 UNIMOD_AMTzHexNAc2 = 100000934
 AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc. More...
 
 UNIMOD_Atto495Maleimide = 100000935
 Atto495Maleimide: High molecular absorption maleimide label for proteins. More...
 
 UNIMOD_Chlorination = 100000936
 Chlorination: Chlorination of tyrosine residues. More...
 
 UNIMOD_dichlorination = 100000937
 dichlorination: Dichlorination. More...
 
 UNIMOD_AROD = 100000938
 AROD: Cysteine modifier. More...
 
 UNIMOD_Cys__methylaminoAla = 100000939
 Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine. More...
 
 UNIMOD_Cys__ethylaminoAla = 100000940
 Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine. More...
 
 UNIMOD_DNPS = 100000941
 DNPS: 2,4-Dinitrobenzenesulfenyl. More...
 
 UNIMOD_SulfoGMBS = 100000942
 SulfoGMBS: High molecular absorption label for proteins. More...
 
 UNIMOD_DimethylamineGMBS = 100000943
 DimethylamineGMBS: Modified GMBS X linker for proteins. More...
 
 UNIMOD_Label_15N_2_2H_9_ = 100000944
 Label:15N(2)2H(9): SILAC label. More...
 
 UNIMOD_LG_anhydrolactam = 100000946
 LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct. More...
 
 UNIMOD_LG_pyrrole = 100000947
 LG-pyrrole: Levuglandinyl-lysine pyrrole adduct. More...
 
 UNIMOD_LG_anhyropyrrole = 100000948
 LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct. More...
 
 UNIMOD_3_deoxyglucosone = 100000949
 3-deoxyglucosone: Condensation product of 3-deoxyglucosone. More...
 
 UNIMOD_Cation_Li = 100000950
 Cation:Li: Replacement of proton by lithium. More...
 
 UNIMOD_Cation_Ca_II_ = 100000951
 Cation:Ca[II]: Replacement of 2 protons by calcium. More...
 
 UNIMOD_Cation_Fe_II_ = 100000952
 Cation:Fe[II]: Replacement of 2 protons by iron. More...
 
 UNIMOD_Cation_Ni_II_ = 100000953
 Cation:Ni[II]: Replacement of 2 protons by nickel. More...
 
 UNIMOD_Cation_Zn_II_ = 100000954
 Cation:Zn[II]: Replacement of 2 protons by zinc. More...
 
 UNIMOD_Cation_Ag = 100000955
 Cation:Ag: Replacement of proton by silver. More...
 
 UNIMOD_Cation_Mg_II_ = 100000956
 Cation:Mg[II]: Replacement of 2 protons by magnesium. More...
 
 UNIMOD_2_succinyl = 100000957
 2-succinyl: S-(2-succinyl) cysteine. More...
 
 UNIMOD_Propargylamine = 100000958
 Propargylamine: Propargylamine. More...
 
 UNIMOD_Phosphopropargyl = 100000959
 Phosphopropargyl: Phospho-propargylamine. More...
 
 UNIMOD_SUMO2135 = 100000960
 SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage. More...
 
 UNIMOD_SUMO3549 = 100000961
 SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage. More...
 
 UNIMOD_thioacylPA = 100000967
 thioacylPA: Membrane protein extraction. More...
 
 UNIMOD_maleimide3 = 100000971
 maleimide3: Maleimide-3-saccharide. More...
 
 UNIMOD_maleimide5 = 100000972
 maleimide5: Maleimide-5-saccharide. More...
 
 UNIMOD_Puromycin = 100000973
 Puromycin: Puromycin. More...
 
 UNIMOD_Chlorpyrifos = 100000975
 Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate. More...
 
 UNIMOD_Carbofuran = 100000977
 Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate. More...
 
 UNIMOD_BITC = 100000978
 BITC: Benzyl isothiocyanate. More...
 
 UNIMOD_PEITC = 100000979
 PEITC: Phenethyl isothiocyanate. More...
 
 UNIMOD_glucosone = 100000981
 glucosone: Condensation product of glucosone. More...
 
 UNIMOD_cysTMT = 100000984
 cysTMT: Native cysteine-reactive Tandem Mass Tag®. More...
 
 UNIMOD_cysTMT6plex = 100000985
 cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®. More...
 
 UNIMOD_Label_13C_6__Dimethyl = 100000986
 Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label. More...
 
 UNIMOD_Label_13C_6_15N_2__Dimethyl = 100000987
 Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label. More...
 
 UNIMOD_Ammonium = 100000989
 Ammonium: Replacement of proton with ammonium ion. More...
 
 UNIMOD_ISD_z_2_ion = 100000991
 ISD_z+2_ion: ISD (z+2)-series. More...
 
 UNIMOD_Biotin_Sigma_B1267 = 100000993
 Biotin:Sigma-B1267: Was Biotin-maleimide. More...
 
 UNIMOD_Label_15N_1_ = 100000994
 Label:15N(1): 15N(1). More...
 
 UNIMOD_Label_15N_2_ = 100000995
 Label:15N(2): 15N(2). More...
 
 UNIMOD_Label_15N_3_ = 100000996
 Label:15N(3): 15N(3). More...
 
 UNIMOD_sulfo_amino = 100000997
 sulfo+amino: Aminotyrosine with sulfation. More...
 
 UNIMOD_AHA_Alkyne = 100001000
 AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne). More...
 
 UNIMOD_AHA_Alkyne_KDDDD = 100001001
 AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne). More...
 
 UNIMOD_EGCG1 = 100001002
 EGCG1: (-)-epigallocatechin-3-gallate. More...
 
 UNIMOD_EGCG2 = 100001003
 EGCG2: (-)-dehydroepigallocatechin. More...
 
 UNIMOD_Label_13C_6_15N_4__Methyl = 100001004
 Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4). More...
 
 UNIMOD_Label_13C_6_15N_4__Dimethyl = 100001005
 Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4). More...
 
 UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_ = 100001006
 Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4). More...
 
 UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_ = 100001007
 Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4). More...
 
 UNIMOD_Cys__CamSec = 100001008
 Cys->CamSec: Sec Iodoacetamide derivative. More...
 
 UNIMOD_Thiazolidine = 100001009
 Thiazolidine: Addition of Carbon to cysteine. More...
 
 UNIMOD_DEDGFLYMVYASQETFG = 100001010
 DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG. More...
 
 UNIMOD_Biotin_Invitrogen_M1602 = 100001012
 Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin. More...
 
 UNIMOD_glycidamide = 100001014
 glycidamide: Glycidamide adduct. More...
 
 UNIMOD_Ahx2_Hsl = 100001015
 Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids. More...
 
 UNIMOD_DMPO = 100001017
 DMPO: DMPO spin-trap nitrone adduct. More...
 
 UNIMOD_ICDID = 100001018
 ICDID: Isotope-Coded Dimedone light form. More...
 
 UNIMOD_ICDID_2H_6_ = 100001019
 ICDID:2H(6): Isotope-Coded Dimedone heavy form. More...
 
 UNIMOD_Xlink_DSS = 100001020
 Xlink:DSS: Water-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus. More...
 
 UNIMOD_Xlink_EGS = 100001021
 Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus. More...
 
 UNIMOD_Xlink_DST = 100001022
 Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus. More...
 
 UNIMOD_Xlink_DTSSP = 100001023
 Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus. More...
 
 UNIMOD_Xlink_SMCC = 100001024
 Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys. More...
 
 UNIMOD_Xlink_DMP_de = 100001027
 Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus. More...
 
 UNIMOD_Xlink_EGScleaved = 100001028
 Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage. More...
 
 UNIMOD_Biotin_Thermo_88310 = 100001031
 Biotin:Thermo-88310: Desthiobiotin modification of lysine. More...
 
 UNIMOD_2_nitrobenzyl = 100001032
 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB). More...
 
 UNIMOD_Cys__SecNEM = 100001033
 Cys->SecNEM: N-ethylmaleimide on selenocysteines. More...
 
 UNIMOD_Cys__SecNEM_2H_5_ = 100001034
 Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines. More...
 
 UNIMOD_Thiadiazole = 100001035
 Thiadiazole: Thiadiazolydation of Cys. More...
 
 UNIMOD_Withaferin = 100001036
 Withaferin: Modification of cystein by withaferin. More...
 
 UNIMOD_Biotin_Thermo_88317 = 100001037
 Biotin:Thermo-88317: Desthiobiotin fluorophosphonate. More...
 
 UNIMOD_TAMRA_FP = 100001038
 TAMRA-FP: TAMRA fluorophosphonate modification of serine. More...
 
 UNIMOD_Biotin_Thermo_21901_H2O = 100001039
 Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water. More...
 
 UNIMOD_Deoxyhypusine = 100001041
 Deoxyhypusine: Deoxyhypusine. More...
 
 UNIMOD_Acetyldeoxyhypusine = 100001042
 Acetyldeoxyhypusine: Acetyldeoxyhypusine. More...
 
 UNIMOD_Acetylhypusine = 100001043
 Acetylhypusine: Acetylhypusine. More...
 
 UNIMOD_Ala__Cys = 100001044
 Ala->Cys: Ala->Cys substitution. More...
 
 UNIMOD_Ala__Phe = 100001045
 Ala->Phe: Ala->Phe substitution. More...
 
 UNIMOD_Ala__His = 100001046
 Ala->His: Ala->His substitution. More...
 
 UNIMOD_Ala__Xle = 100001047
 Ala->Xle: Ala->Leu/Ile substitution. More...
 
 UNIMOD_Ala__Lys = 100001048
 Ala->Lys: Ala->Lys substitution. More...
 
 UNIMOD_Ala__Met = 100001049
 Ala->Met: Ala->Met substitution. More...
 
 UNIMOD_Ala__Asn = 100001050
 Ala->Asn: Ala->Asn substitution. More...
 
 UNIMOD_Ala__Gln = 100001051
 Ala->Gln: Ala->Gln substitution. More...
 
 UNIMOD_Ala__Arg = 100001052
 Ala->Arg: Ala->Arg substitution. More...
 
 UNIMOD_Ala__Trp = 100001053
 Ala->Trp: Ala->Trp substitution. More...
 
 UNIMOD_Ala__Tyr = 100001054
 Ala->Tyr: Ala->Tyr substitution. More...
 
 UNIMOD_Cys__Ala = 100001055
 Cys->Ala: Cys->Ala substitution. More...
 
 UNIMOD_Cys__Asp = 100001056
 Cys->Asp: Cys->Asp substitution. More...
 
 UNIMOD_Cys__Glu = 100001057
 Cys->Glu: Cys->Glu substitution. More...
 
 UNIMOD_Cys__His = 100001058
 Cys->His: Cys->His substitution. More...
 
 UNIMOD_Cys__Xle = 100001059
 Cys->Xle: Cys->Leu/Ile substitution. More...
 
 UNIMOD_Cys__Lys = 100001060
 Cys->Lys: Cys->Lys substitution. More...
 
 UNIMOD_Cys__Met = 100001061
 Cys->Met: Cys->Met substitution. More...
 
 UNIMOD_Cys__Asn = 100001062
 Cys->Asn: Cys->Asn substitution. More...
 
 UNIMOD_Cys__Pro = 100001063
 Cys->Pro: Cys->Pro substitution. More...
 
 UNIMOD_Cys__Gln = 100001064
 Cys->Gln: Cys->Gln substitution. More...
 
 UNIMOD_Cys__Thr = 100001065
 Cys->Thr: Cys->Thr substitution. More...
 
 UNIMOD_Cys__Val = 100001066
 Cys->Val: Cys->Val substitution. More...
 
 UNIMOD_Asp__Cys = 100001067
 Asp->Cys: Asp->Cys substitution. More...
 
 UNIMOD_Asp__Phe = 100001068
 Asp->Phe: Asp->Phe substitution. More...
 
 UNIMOD_Asp__Xle = 100001069
 Asp->Xle: Asp->Leu/Ile substitution. More...
 
 UNIMOD_Asp__Lys = 100001070
 Asp->Lys: Asp->Lys substitution. More...
 
 UNIMOD_Asp__Met = 100001071
 Asp->Met: Asp->Met substitution. More...
 
 UNIMOD_Asp__Pro = 100001072
 Asp->Pro: Asp->Pro substitution. More...
 
 UNIMOD_Asp__Gln = 100001073
 Asp->Gln: Asp->Gln substitution. More...
 
 UNIMOD_Asp__Arg = 100001074
 Asp->Arg: Asp->Arg substitution. More...
 
 UNIMOD_Asp__Ser = 100001075
 Asp->Ser: Asp->Ser substitution. More...
 
 UNIMOD_Asp__Thr = 100001076
 Asp->Thr: Asp->Thr substitution. More...
 
 UNIMOD_Asp__Trp = 100001077
 Asp->Trp: Asp->Trp substitution. More...
 
 UNIMOD_Glu__Cys = 100001078
 Glu->Cys: Glu->Cys substitution. More...
 
 UNIMOD_Glu__Phe = 100001079
 Glu->Phe: Glu->Phe substitution. More...
 
 UNIMOD_Glu__His = 100001080
 Glu->His: Glu->His substitution. More...
 
 UNIMOD_Glu__Xle = 100001081
 Glu->Xle: Glu->Leu/Ile substitution. More...
 
 UNIMOD_Glu__Met = 100001082
 Glu->Met: Glu->Met substitution. More...
 
 UNIMOD_Glu__Asn = 100001083
 Glu->Asn: Glu->Asn substitution. More...
 
 UNIMOD_Glu__Pro = 100001084
 Glu->Pro: Glu->Pro substitution. More...
 
 UNIMOD_Glu__Arg = 100001085
 Glu->Arg: Glu->Arg substitution. More...
 
 UNIMOD_Glu__Ser = 100001086
 Glu->Ser: Glu->Ser substitution. More...
 
 UNIMOD_Glu__Thr = 100001087
 Glu->Thr: Glu->Thr substitution. More...
 
 UNIMOD_Glu__Trp = 100001088
 Glu->Trp: Glu->Trp substitution. More...
 
 UNIMOD_Glu__Tyr = 100001089
 Glu->Tyr: Glu->Tyr substitution. More...
 
 UNIMOD_Phe__Ala = 100001090
 Phe->Ala: Phe->Ala substitution. More...
 
 UNIMOD_Phe__Asp = 100001091
 Phe->Asp: Phe->Asp substitution. More...
 
 UNIMOD_Phe__Glu = 100001092
 Phe->Glu: Phe->Glu substitution. More...
 
 UNIMOD_Phe__Gly = 100001093
 Phe->Gly: Phe->Gly substitution. More...
 
 UNIMOD_Phe__His = 100001094
 Phe->His: Phe->His substitution. More...
 
 UNIMOD_Phe__Lys = 100001095
 Phe->Lys: Phe->Lys substitution. More...
 
 UNIMOD_Phe__Met = 100001096
 Phe->Met: Phe->Met substitution. More...
 
 UNIMOD_Phe__Asn = 100001097
 Phe->Asn: Phe->Asn substitution. More...
 
 UNIMOD_Phe__Pro = 100001098
 Phe->Pro: Phe->Pro substitution. More...
 
 UNIMOD_Phe__Gln = 100001099
 Phe->Gln: Phe->Gln substitution. More...
 
 UNIMOD_Phe__Arg = 100001100
 Phe->Arg: Phe->Arg substitution. More...
 
 UNIMOD_Phe__Thr = 100001101
 Phe->Thr: Phe->Thr substitution. More...
 
 UNIMOD_Phe__Trp = 100001102
 Phe->Trp: Phe->Trp substitution. More...
 
 UNIMOD_Gly__Phe = 100001103
 Gly->Phe: Gly->Phe substitution. More...
 
 UNIMOD_Gly__His = 100001104
 Gly->His: Gly->His substitution. More...
 
 UNIMOD_Gly__Xle = 100001105
 Gly->Xle: Gly->Leu/Ile substitution. More...
 
 UNIMOD_Gly__Lys = 100001106
 Gly->Lys: Gly->Lys substitution. More...
 
 UNIMOD_Gly__Met = 100001107
 Gly->Met: Gly->Met substitution. More...
 
 UNIMOD_Gly__Asn = 100001108
 Gly->Asn: Gly->Asn substitution. More...
 
 UNIMOD_Gly__Pro = 100001109
 Gly->Pro: Gly->Pro substitution. More...
 
 UNIMOD_Gly__Gln = 100001110
 Gly->Gln: Gly->Gln substitution. More...
 
 UNIMOD_Gly__Thr = 100001111
 Gly->Thr: Gly->Thr substitution. More...
 
 UNIMOD_Gly__Tyr = 100001112
 Gly->Tyr: Gly->Tyr substitution. More...
 
 UNIMOD_His__Ala = 100001113
 His->Ala: His->Ala substitution. More...
 
 UNIMOD_His__Cys = 100001114
 His->Cys: His->Cys substitution. More...
 
 UNIMOD_His__Glu = 100001115
 His->Glu: His->Glu substitution. More...
 
 UNIMOD_His__Phe = 100001116
 His->Phe: His->Phe substitution. More...
 
 UNIMOD_His__Gly = 100001117
 His->Gly: His->Gly substitution. More...
 
 UNIMOD_His__Lys = 100001119
 His->Lys: His->Lys substitution. More...
 
 UNIMOD_His__Met = 100001120
 His->Met: His->Met substitution. More...
 
 UNIMOD_His__Ser = 100001121
 His->Ser: His->Ser substitution. More...
 
 UNIMOD_His__Thr = 100001122
 His->Thr: His->Thr substitution. More...
 
 UNIMOD_His__Val = 100001123
 His->Val: His->Val substitution. More...
 
 UNIMOD_His__Trp = 100001124
 His->Trp: His->Trp substitution. More...
 
 UNIMOD_Xle__Ala = 100001125
 Xle->Ala: Leu/Ile->Ala substitution. More...
 
 UNIMOD_Xle__Cys = 100001126
 Xle->Cys: Leu/Ile->Cys substitution. More...
 
 UNIMOD_Xle__Asp = 100001127
 Xle->Asp: Leu/Ile->Asp substitution. More...
 
 UNIMOD_Xle__Glu = 100001128
 Xle->Glu: Leu/Ile->Glu substitution. More...
 
 UNIMOD_Xle__Gly = 100001129
 Xle->Gly: Leu/Ile->Gly substitution. More...
 
 UNIMOD_Xle__Tyr = 100001130
 Xle->Tyr: Leu/Ile->Tyr substitution. More...
 
 UNIMOD_Lys__Ala = 100001131
 Lys->Ala: Lys->Ala substitution. More...
 
 UNIMOD_Lys__Cys = 100001132
 Lys->Cys: Lys->Cys substitution. More...
 
 UNIMOD_Lys__Asp = 100001133
 Lys->Asp: Lys->Asp substitution. More...
 
 UNIMOD_Lys__Phe = 100001134
 Lys->Phe: Lys->Phe substitution. More...
 
 UNIMOD_Lys__Gly = 100001135
 Lys->Gly: Lys->Gly substitution. More...
 
 UNIMOD_Lys__His = 100001136
 Lys->His: Lys->His substitution. More...
 
 UNIMOD_Lys__Pro = 100001137
 Lys->Pro: Lys->Pro substitution. More...
 
 UNIMOD_Lys__Ser = 100001138
 Lys->Ser: Lys->Ser substitution. More...
 
 UNIMOD_Lys__Val = 100001139
 Lys->Val: Lys->Val substitution. More...
 
 UNIMOD_Lys__Trp = 100001140
 Lys->Trp: Lys->Trp substitution. More...
 
 UNIMOD_Lys__Tyr = 100001141
 Lys->Tyr: Lys->Tyr substitution. More...
 
 UNIMOD_Met__Ala = 100001142
 Met->Ala: Met->Ala substitution. More...
 
 UNIMOD_Met__Cys = 100001143
 Met->Cys: Met->Cys substitution. More...
 
 UNIMOD_Met__Asp = 100001144
 Met->Asp: Met->Asp substitution. More...
 
 UNIMOD_Met__Glu = 100001145
 Met->Glu: Met->Glu substitution. More...
 
 UNIMOD_Met__Phe = 100001146
 Met->Phe: Met->Phe substitution. More...
 
 UNIMOD_Met__Gly = 100001147
 Met->Gly: Met->Gly substitution. More...
 
 UNIMOD_Met__His = 100001148
 Met->His: Met->His substitution. More...
 
 UNIMOD_Met__Asn = 100001149
 Met->Asn: Met->Asn substitution. More...
 
 UNIMOD_Met__Pro = 100001150
 Met->Pro: Met->Pro substitution. More...
 
 UNIMOD_Met__Gln = 100001151
 Met->Gln: Met->Gln substitution. More...
 
 UNIMOD_Met__Ser = 100001152
 Met->Ser: Met->Ser substitution. More...
 
 UNIMOD_Met__Trp = 100001153
 Met->Trp: Met->Trp substitution. More...
 
 UNIMOD_Met__Tyr = 100001154
 Met->Tyr: Met->Tyr substitution. More...
 
 UNIMOD_Asn__Ala = 100001155
 Asn->Ala: Asn->Ala substitution. More...
 
 UNIMOD_Asn__Cys = 100001156
 Asn->Cys: Asn->Cys substitution. More...
 
 UNIMOD_Asn__Glu = 100001157
 Asn->Glu: Asn->Glu substitution. More...
 
 UNIMOD_Asn__Phe = 100001158
 Asn->Phe: Asn->Phe substitution. More...
 
 UNIMOD_Asn__Gly = 100001159
 Asn->Gly: Asn->Gly substitution. More...
 
 UNIMOD_Asn__Met = 100001160
 Asn->Met: Asn->Met substitution. More...
 
 UNIMOD_Asn__Pro = 100001161
 Asn->Pro: Asn->Pro substitution. More...
 
 UNIMOD_Asn__Gln = 100001162
 Asn->Gln: Asn->Gln substitution. More...
 
 UNIMOD_Asn__Arg = 100001163
 Asn->Arg: Asn->Arg substitution. More...
 
 UNIMOD_Asn__Val = 100001164
 Asn->Val: Asn->Val substitution. More...
 
 UNIMOD_Asn__Trp = 100001165
 Asn->Trp: Asn->Trp substitution. More...
 
 UNIMOD_Pro__Cys = 100001166
 Pro->Cys: Pro->Cys substitution. More...
 
 UNIMOD_Pro__Asp = 100001167
 Pro->Asp: Pro->Asp substitution. More...
 
 UNIMOD_Pro__Glu = 100001168
 Pro->Glu: Pro->Glu substitution. More...
 
 UNIMOD_Pro__Phe = 100001169
 Pro->Phe: Pro->Phe substitution. More...
 
 UNIMOD_Pro__Gly = 100001170
 Pro->Gly: Pro->Gly substitution. More...
 
 UNIMOD_Pro__Lys = 100001171
 Pro->Lys: Pro->Lys substitution. More...
 
 UNIMOD_Pro__Met = 100001172
 Pro->Met: Pro->Met substitution. More...
 
 UNIMOD_Pro__Asn = 100001173
 Pro->Asn: Pro->Asn substitution. More...
 
 UNIMOD_Pro__Val = 100001174
 Pro->Val: Pro->Val substitution. More...
 
 UNIMOD_Pro__Trp = 100001175
 Pro->Trp: Pro->Trp substitution. More...
 
 UNIMOD_Pro__Tyr = 100001176
 Pro->Tyr: Pro->Tyr substitution. More...
 
 UNIMOD_Gln__Ala = 100001177
 Gln->Ala: Gln->Ala substitution. More...
 
 UNIMOD_Gln__Cys = 100001178
 Gln->Cys: Gln->Cys substitution. More...
 
 UNIMOD_Gln__Asp = 100001179
 Gln->Asp: Gln->Asp substitution. More...
 
 UNIMOD_Gln__Phe = 100001180
 Gln->Phe: Gln->Phe substitution. More...
 
 UNIMOD_Gln__Gly = 100001181
 Gln->Gly: Gln->Gly substitution. More...
 
 UNIMOD_Gln__Met = 100001182
 Gln->Met: Gln->Met substitution. More...
 
 UNIMOD_Gln__Asn = 100001183
 Gln->Asn: Gln->Asn substitution. More...
 
 UNIMOD_Gln__Ser = 100001184
 Gln->Ser: Gln->Ser substitution. More...
 
 UNIMOD_Gln__Thr = 100001185
 Gln->Thr: Gln->Thr substitution. More...
 
 UNIMOD_Gln__Val = 100001186
 Gln->Val: Gln->Val substitution. More...
 
 UNIMOD_Gln__Trp = 100001187
 Gln->Trp: Gln->Trp substitution. More...
 
 UNIMOD_Gln__Tyr = 100001188
 Gln->Tyr: Gln->Tyr substitution. More...
 
 UNIMOD_Arg__Ala = 100001189
 Arg->Ala: Arg->Ala substitution. More...
 
 UNIMOD_Arg__Asp = 100001190
 Arg->Asp: Arg->Asp substitution. More...
 
 UNIMOD_Arg__Glu = 100001191
 Arg->Glu: Arg->Glu substitution. More...
 
 UNIMOD_Arg__Asn = 100001192
 Arg->Asn: Arg->Asn substitution. More...
 
 UNIMOD_Arg__Val = 100001193
 Arg->Val: Arg->Val substitution. More...
 
 UNIMOD_Arg__Tyr = 100001194
 Arg->Tyr: Arg->Tyr substitution. More...
 
 UNIMOD_Arg__Phe = 100001195
 Arg->Phe: Arg->Phe substitution. More...
 
 UNIMOD_Ser__Asp = 100001196
 Ser->Asp: Ser->Asp substitution. More...
 
 UNIMOD_Ser__Glu = 100001197
 Ser->Glu: Ser->Glu substitution. More...
 
 UNIMOD_Ser__His = 100001198
 Ser->His: Ser->His substitution. More...
 
 UNIMOD_Ser__Lys = 100001199
 Ser->Lys: Ser->Lys substitution. More...
 
 UNIMOD_Ser__Met = 100001200
 Ser->Met: Ser->Met substitution. More...
 
 UNIMOD_Ser__Gln = 100001201
 Ser->Gln: Ser->Gln substitution. More...
 
 UNIMOD_Ser__Val = 100001202
 Ser->Val: Ser->Val substitution. More...
 
 UNIMOD_Thr__Cys = 100001203
 Thr->Cys: Thr->Cys substitution. More...
 
 UNIMOD_Thr__Asp = 100001204
 Thr->Asp: Thr->Asp substitution. More...
 
 UNIMOD_Thr__Glu = 100001205
 Thr->Glu: Thr->Glu substitution. More...
 
 UNIMOD_Thr__Phe = 100001206
 Thr->Phe: Thr->Phe substitution. More...
 
 UNIMOD_Thr__Gly = 100001207
 Thr->Gly: Thr->Gly substitution. More...
 
 UNIMOD_Thr__His = 100001208
 Thr->His: Thr->His substitution. More...
 
 UNIMOD_Thr__Gln = 100001209
 Thr->Gln: Thr->Gln substitution. More...
 
 UNIMOD_Thr__Val = 100001210
 Thr->Val: Thr->Val substitution. More...
 
 UNIMOD_Thr__Trp = 100001211
 Thr->Trp: Thr->Trp substitution. More...
 
 UNIMOD_Thr__Tyr = 100001212
 Thr->Tyr: Thr->Tyr substitution. More...
 
 UNIMOD_Val__Cys = 100001213
 Val->Cys: Val->Cys substitution. More...
 
 UNIMOD_Val__His = 100001214
 Val->His: Val->His substitution. More...
 
 UNIMOD_Val__Lys = 100001215
 Val->Lys: Val->Lys substitution. More...
 
 UNIMOD_Val__Asn = 100001216
 Val->Asn: Val->Asn substitution. More...
 
 UNIMOD_Val__Pro = 100001217
 Val->Pro: Val->Pro substitution. More...
 
 UNIMOD_Val__Gln = 100001218
 Val->Gln: Val->Gln substitution. More...
 
 UNIMOD_Val__Arg = 100001219
 Val->Arg: Val->Arg substitution. More...
 
 UNIMOD_Val__Ser = 100001220
 Val->Ser: Val->Ser substitution. More...
 
 UNIMOD_Val__Thr = 100001221
 Val->Thr: Val->Thr substitution. More...
 
 UNIMOD_Val__Trp = 100001222
 Val->Trp: Val->Trp substitution. More...
 
 UNIMOD_Val__Tyr = 100001223
 Val->Tyr: Val->Tyr substitution. More...
 
 UNIMOD_Trp__Ala = 100001224
 Trp->Ala: Trp->Ala substitution. More...
 
 UNIMOD_Trp__Asp = 100001225
 Trp->Asp: Trp->Asp substitution. More...
 
 UNIMOD_Trp__Glu = 100001226
 Trp->Glu: Trp->Glu substitution. More...
 
 UNIMOD_Trp__Phe = 100001227
 Trp->Phe: Trp->Phe substitution. More...
 
 UNIMOD_Trp__His = 100001228
 Trp->His: Trp->His substitution. More...
 
 UNIMOD_Trp__Lys = 100001229
 Trp->Lys: Trp->Lys substitution. More...
 
 UNIMOD_Trp__Met = 100001230
 Trp->Met: Trp->Met substitution. More...
 
 UNIMOD_Trp__Asn = 100001231
 Trp->Asn: Trp->Asn substitution. More...
 
 UNIMOD_Trp__Pro = 100001232
 Trp->Pro: Trp->Pro substitution. More...
 
 UNIMOD_Trp__Gln = 100001233
 Trp->Gln: Trp->Gln substitution. More...
 
 UNIMOD_Trp__Thr = 100001234
 Trp->Thr: Trp->Thr substitution. More...
 
 UNIMOD_Trp__Val = 100001235
 Trp->Val: Trp->Val substitution. More...
 
 UNIMOD_Trp__Tyr = 100001236
 Trp->Tyr: Trp->Tyr substitution. More...
 
 UNIMOD_Tyr__Ala = 100001237
 Tyr->Ala: Tyr->Ala substitution. More...
 
 UNIMOD_Tyr__Glu = 100001238
 Tyr->Glu: Tyr->Glu substitution. More...
 
 UNIMOD_Tyr__Gly = 100001239
 Tyr->Gly: Tyr->Gly substitution. More...
 
 UNIMOD_Tyr__Lys = 100001240
 Tyr->Lys: Tyr->Lys substitution. More...
 
 UNIMOD_Tyr__Met = 100001241
 Tyr->Met: Tyr->Met substitution. More...
 
 UNIMOD_Tyr__Pro = 100001242
 Tyr->Pro: Tyr->Pro substitution. More...
 
 UNIMOD_Tyr__Gln = 100001243
 Tyr->Gln: Tyr->Gln substitution. More...
 
 UNIMOD_Tyr__Arg = 100001244
 Tyr->Arg: Tyr->Arg substitution. More...
 
 UNIMOD_Tyr__Thr = 100001245
 Tyr->Thr: Tyr->Thr substitution. More...
 
 UNIMOD_Tyr__Val = 100001246
 Tyr->Val: Tyr->Val substitution. More...
 
 UNIMOD_Tyr__Trp = 100001247
 Tyr->Trp: Tyr->Trp substitution. More...
 
 UNIMOD_Tyr__Xle = 100001248
 Tyr->Xle: Tyr->Leu/Ile substitution. More...
 
 UNIMOD_AHA_SS = 100001249
 AHA-SS: Azidohomoalanine coupled to reductively cleaved tag. More...
 
 UNIMOD_AHA_SS_CAM = 100001250
 AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine. More...
 
 UNIMOD_Biotin_Thermo_33033 = 100001251
 Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker. More...
 
 UNIMOD_Biotin_Thermo_33033_H = 100001252
 Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen. More...
 
 UNIMOD_2_monomethylsuccinyl = 100001253
 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine. More...
 
 UNIMOD_Saligenin = 100001254
 Saligenin: O-toluene. More...
 
 UNIMOD_Cresylphosphate = 100001255
 Cresylphosphate: O-toluyl-phosphorylation. More...
 
 UNIMOD_CresylSaligeninPhosphate = 100001256
 CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation. More...
 
 UNIMOD_Ub_Br2 = 100001257
 Ub-Br2: Ub Bromide probe addition. More...
 
 UNIMOD_Ub_VME = 100001258
 Ub-VME: Ubiquitin vinylmethylester. More...
 
 UNIMOD_Ub_amide = 100001260
 Ub-amide: Ub amide probe addition. More...
 
 UNIMOD_Ub_fluorescein = 100001261
 Ub-fluorescein: Ub Fluorescein probe addition. More...
 
 UNIMOD_2_dimethylsuccinyl = 100001262
 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine. More...
 
 UNIMOD_Gly = 100001263
 Gly: Addition of Glycine. More...
 
 UNIMOD_pupylation = 100001264
 pupylation: Addition of GGE. More...
 
 UNIMOD_Label_13C_4_ = 100001266
 Label:13C(4): 13C4 Methionine label. More...
 
 UNIMOD_Label_13C_4__Oxidation = 100001267
 Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine. More...
 
 UNIMOD_HCysThiolactone = 100001270
 HCysThiolactone: N-Homocysteine thiolactone. More...
 
 UNIMOD_HCysteinyl = 100001271
 HCysteinyl: S-homocysteinylation. More...
 
 UNIMOD_UgiJoullie = 100001276
 UgiJoullie: Side reaction of HisTag. More...
 
 UNIMOD_Dipyridyl = 100001277
 Dipyridyl: Cys modified with dipy ligand. More...
 
 UNIMOD_Furan = 100001278
 Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction. More...
 
 UNIMOD_Difuran = 100001279
 Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction. More...
 
 UNIMOD_BMP_piperidinol = 100001281
 BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine. More...
 
 UNIMOD_UgiJoullieProGly = 100001282
 UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid. More...
 
 UNIMOD_UgiJoullieProGlyProGly = 100001283
 UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid. More...
 
 UNIMOD_IMEHex_2_NeuAc_1_ = 100001286
 IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc. More...
 
 UNIMOD_Arg_loss = 100001287
 Arg-loss: Loss of arginine due to transpeptidation. More...
 
 UNIMOD_Arg = 100001288
 Arg: Addition of arginine due to transpeptidation. More...
 
 UNIMOD_Butyryl = 100001289
 Butyryl: Butyryl. More...
 
 UNIMOD_Dicarbamidomethyl = 100001290
 Dicarbamidomethyl: Double Carbamidomethylation. More...
 
 UNIMOD_Dimethyl_2H_6_ = 100001291
 Dimethyl:2H(6): Dimethyl-Medium. More...
 
 UNIMOD_GGQ = 100001292
 GGQ: SUMOylation leaving GlyGlyGln. More...
 
 UNIMOD_QTGG = 100001293
 QTGG: SUMOylation leaving GlnThrGlyGly. More...
 
 UNIMOD_Label_13C_3_ = 100001296
 Label:13C(3): 13C3 label for SILAC. More...
 
 UNIMOD_Label_13C_3_15N_1_ = 100001297
 Label:13C(3)15N(1): 13C3 15N1 label for SILAC. More...
 
 UNIMOD_Label_13C_4_15N_1_ = 100001298
 Label:13C(4)15N(1): 13C4 15N1 label for SILAC. More...
 
 UNIMOD_Label_2H_10_ = 100001299
 Label:2H(10): 2H(10) label. More...
 
 UNIMOD_Label_2H_4_13C_1_ = 100001300
 Label:2H(4)13C(1): Label:2H(4)13C(1). More...
 
 UNIMOD_Lys = 100001301
 Lys: Addition of lysine due to transpeptidation. More...
 
 UNIMOD_mTRAQ_13C_6_15N_2_ = 100001302
 mTRAQ:13C(6)15N(2): MTRAQ heavy. More...
 
 UNIMOD_NeuAc = 100001303
 NeuAc: N-acetyl neuraminic acid. More...
 
 UNIMOD_NeuGc = 100001304
 NeuGc: N-glycoyl neuraminic acid. More...
 
 UNIMOD_Propyl = 100001305
 Propyl: Propyl. More...
 
 UNIMOD_Propyl_2H_6_ = 100001306
 Propyl:2H(6): Propyl:2H(6). More...
 
 UNIMOD_Propiophenone = 100001310
 Propiophenone: Propiophenone. More...
 
 UNIMOD_Delta_H_6_C_3_O_1_ = 100001312
 Delta:H(6)C(3)O(1): Reduced acrolein addition +58. More...
 
 UNIMOD_Delta_H_8_C_6_O_1_ = 100001313
 Delta:H(8)C(6)O(1): Reduced acrolein addition +96. More...
 
 UNIMOD_biotinAcrolein298 = 100001314
 biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298. More...
 
 UNIMOD_MM_diphenylpentanone = 100001315
 MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one. More...
 
 UNIMOD_EHD_diphenylpentanone = 100001317
 EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one. More...
 
 UNIMOD_Biotin_Thermo_21901_2H2O = 100001320
 Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water. More...
 
 UNIMOD_DiLeu4plex115 = 100001321
 DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag. More...
 
 UNIMOD_DiLeu4plex = 100001322
 DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag. More...
 
 UNIMOD_DiLeu4plex117 = 100001323
 DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag. More...
 
 UNIMOD_DiLeu4plex118 = 100001324
 DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag. More...
 
 UNIMOD_NEMsulfur = 100001326
 NEMsulfur: N-ethylmaleimideSulfur. More...
 
 UNIMOD_SulfurDioxide = 100001327
 SulfurDioxide: SulfurDioxide. More...
 
 UNIMOD_NEMsulfurWater = 100001328
 NEMsulfurWater: N-ethylmaleimideSulfurWater. More...
 
 UNIMOD_bisANS_sulfonates = 100001330
 bisANS-sulfonates: BisANS with loss of both sulfonates. More...
 
 UNIMOD_DNCB_hapten = 100001331
 DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB). More...
 
 UNIMOD_Biotin_Thermo_21911 = 100001340
 Biotin:Thermo-21911: Biotin-PEG11-maleimide. More...
 
 UNIMOD_iodoTMT = 100001341
 iodoTMT: Native iodoacetyl Tandem Mass Tag®. More...
 
 UNIMOD_iodoTMT6plex = 100001342
 iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®. More...
 
 UNIMOD_Phosphogluconoylation = 100001344
 Phosphogluconoylation: Phosphogluconoylation. More...
 
 UNIMOD_PS_Hapten = 100001345
 PS_Hapten: Reaction with phenyl salicylate (PS). More...
 
 UNIMOD_Cy3_maleimide = 100001348
 Cy3-maleimide: Cy3 Maleimide mono-Reactive dye. More...
 
 UNIMOD_benzylguanidine = 100001349
 benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group. More...
 
 UNIMOD_CarboxymethylDMAP = 100001350
 CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides. More...
 
 UNIMOD_azole = 100001355
 azole: Formation of five membered aromatic heterocycle. More...
 
 UNIMOD_phosphoRibosyl = 100001356
 phosphoRibosyl: Phosphate-ribosylation. More...
 
 UNIMOD_NEM_2H_5__H2O = 100001358
 NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines. More...
 
 UNIMOD_Crotonyl = 100001363
 Crotonyl: Crotonylation. More...
 
 UNIMOD_O_Et_N_diMePhospho = 100001364
 O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate. More...
 
 UNIMOD_N_dimethylphosphate = 100001365
 N-dimethylphosphate: N-dimethylphosphate. More...
 
 UNIMOD_dHex_1_Hex_1_ = 100001367
 dHex(1)Hex(1): Hex1dHex1. More...
 
 UNIMOD_Methyl_2H_3__Acetyl_2H_3_ = 100001368
 Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy. More...
 
 UNIMOD_Label_2H_3__Oxidation = 100001370
 Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine. More...
 
 UNIMOD_Trimethyl_2H_9_ = 100001371
 Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups. More...
 
 UNIMOD_Acetyl_13C_2_ = 100001372
 Acetyl:13C(2): Heavy acetylation. More...
 
 UNIMOD_dHex_1_Hex_2_ = 100001375
 dHex(1)Hex(2): Hex2dHex1. More...
 
 UNIMOD_dHex_1_Hex_3_ = 100001376
 dHex(1)Hex(3): Hex3dHex1. More...
 
 UNIMOD_dHex_1_Hex_4_ = 100001377
 dHex(1)Hex(4): Hex4dHex1. More...
 
 UNIMOD_dHex_1_Hex_5_ = 100001378
 dHex(1)Hex(5): Hex5dHex1. More...
 
 UNIMOD_dHex_1_Hex_6_ = 100001379
 dHex(1)Hex(6): Hex6dHex1. More...
 
 UNIMOD_methylsulfonylethyl = 100001380
 methylsulfonylethyl: Reaction with methyl vinyl sulfone. More...
 
 UNIMOD_ethylsulfonylethyl = 100001381
 ethylsulfonylethyl: Reaction with ethyl vinyl sulfone. More...
 
 UNIMOD_phenylsulfonylethyl = 100001382
 phenylsulfonylethyl: Reaction with phenyl vinyl sulfone. More...
 
 UNIMOD_PyridoxalPhosphateH2 = 100001383
 PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage. More...
 
 UNIMOD_Homocysteic_acid = 100001384
 Homocysteic_acid: Methionine oxidation to homocysteic acid. More...
 
 UNIMOD_Hydroxamic_acid = 100001385
 Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid. More...
 
 UNIMOD_3_phosphoglyceryl = 100001387
 3-phosphoglyceryl: 3-phosphoglyceryl. More...
 
 UNIMOD_HN2_mustard = 100001388
 HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2). More...
 
 UNIMOD_HN3_mustard = 100001389
 HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3). More...
 
 UNIMOD_Oxidation_NEM = 100001390
 Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid. More...
 
 UNIMOD_NHS_fluorescein = 100001391
 NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis. More...
 
 UNIMOD_DiART6plex = 100001392
 DiART6plex: Representative mass and accurate mass for 114. More...
 
 UNIMOD_DiART6plex115 = 100001393
 DiART6plex115: Accurate mass for DiART6plex 115. More...
 
 UNIMOD_DiART6plex116_119 = 100001394
 DiART6plex116/119: Accurate mass for DiART6plex 116 and 119. More...
 
 UNIMOD_DiART6plex117 = 100001395
 DiART6plex117: Accurate mass for DiART6plex 117. More...
 
 UNIMOD_DiART6plex118 = 100001396
 DiART6plex118: Accurate mass for DiART6plex 118. More...
 
 UNIMOD_Iodoacetanilide = 100001397
 Iodoacetanilide: Iodoacetanilide derivative. More...
 
 UNIMOD_Iodoacetanilide_13C_6_ = 100001398
 Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative. More...
 
 UNIMOD_Dap_DSP = 100001399
 Dap-DSP: Diaminopimelic acid-DSP monolinked. More...
 
 UNIMOD_MurNAc = 100001400
 MurNAc: N-Acetylmuramic acid. More...
 
 UNIMOD_Label_2H_7_15N_4_ = 100001402
 Label:2H(7)15N(4): Label:2H(7)15N(4). More...
 
 UNIMOD_Label_2H_6_15N_1_ = 100001403
 Label:2H(6)15N(1): Label:2H(6)15N(1). More...
 
 UNIMOD_EEEDVIEVYQEQTGG = 100001405
 EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage. More...
 
 UNIMOD_EDEDTIDVFQQQTGG = 100001406
 EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage. More...
 
 UNIMOD_Hex_5_HexNAc_4_NeuAc_2_ = 100001408
 Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2). More...
 
 UNIMOD_Hex_5_HexNAc_4_NeuAc_1_ = 100001409
 Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_ = 100001410
 dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_ = 100001411
 dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2). More...
 
 UNIMOD_s_GlcNAc = 100001412
 s-GlcNAc: O3S1HexNAc1. More...
 
 UNIMOD_PhosphoHex_2_ = 100001413
 PhosphoHex(2): H1O3P1Hex2. More...
 
 UNIMOD_Trimethyl_13C_3_2H_9_ = 100001414
 Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups. More...
 
 UNIMOD_15N_oxobutanoic = 100001419
 15N-oxobutanoic: Loss of ammonia (15N). More...
 
 UNIMOD_spermine = 100001420
 spermine: Spermine adduct. More...
 
 UNIMOD_spermidine = 100001421
 spermidine: Spermidine adduct. More...
 
 UNIMOD_Biotin_Thermo_21330 = 100001423
 Biotin:Thermo-21330: Biotin_PEG4. More...
 
 UNIMOD_Pentose = 100001425
 Pentose: Pentose. More...
 
 UNIMOD_Hex_1_Pent_1_ = 100001426
 Hex(1)Pent(1): Hex Pent. More...
 
 UNIMOD_Hex_1_HexA_1_ = 100001427
 Hex(1)HexA(1): Hex HexA. More...
 
 UNIMOD_Hex_1_Pent_2_ = 100001428
 Hex(1)Pent(2): Hex Pent(2). More...
 
 UNIMOD_Hex_1_HexNAc_1_Phos_1_ = 100001429
 Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos. More...
 
 UNIMOD_Hex_1_HexNAc_1_Sulf_1_ = 100001430
 Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf. More...
 
 UNIMOD_Hex_1_NeuAc_1_ = 100001431
 Hex(1)NeuAc(1): Hex NeuAc. More...
 
 UNIMOD_Hex_1_NeuGc_1_ = 100001432
 Hex(1)NeuGc(1): Hex NeuGc. More...
 
 UNIMOD_HexNAc_3_ = 100001433
 HexNAc(3): HexNAc(3). More...
 
 UNIMOD_HexNAc_1_NeuAc_1_ = 100001434
 HexNAc(1)NeuAc(1): HexNAc NeuAc. More...
 
 UNIMOD_HexNAc_1_NeuGc_1_ = 100001435
 HexNAc(1)NeuGc(1): HexNAc NeuGc. More...
 
 UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_ = 100001436
 Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me. More...
 
 UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_ = 100001437
 Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2). More...
 
 UNIMOD_Hex_2_HexNAc_1_ = 100001438
 Hex(2)HexNAc(1): Hex(2) HexNAc. More...
 
 UNIMOD_Hex_1_HexA_1_HexNAc_1_ = 100001439
 Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc. More...
 
 UNIMOD_Hex_2_HexNAc_1_Me_1_ = 100001440
 Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me. More...
 
 UNIMOD_Hex_3_Phos_1_ = 100001441
 Hex(3)Phos(1): Hex(3) Phos. More...
 
 UNIMOD_Hex_1_NeuAc_1_Pent_1_ = 100001442
 Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent. More...
 
 UNIMOD_Hex_2_HexNAc_1_Sulf_1_ = 100001443
 Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf. More...
 
 UNIMOD_Hex_2_NeuAc_1_ = 100001444
 Hex(2)NeuAc(1): Hex(2) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_2_ = 100001445
 dHex(2)Hex(2): Hex2 dHex2. More...
 
 UNIMOD_dHex_1_Hex_2_HexA_1_ = 100001446
 dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA. More...
 
 UNIMOD_Hex_1_HexNAc_2_Sulf_1_ = 100001447
 Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf. More...
 
 UNIMOD_Hex_4_ = 100001448
 Hex(4): Hex(4). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_ = 100001449
 dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_2_HexNAc_2_NeuAc_1_ = 100001450
 Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc. More...
 
 UNIMOD_Hex_3_HexNAc_2_Pent_1_ = 100001451
 Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_4_HexNAc_2_ = 100001452
 Hex(4)HexNAc(2): Hex(4) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_ = 100001453
 dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_ = 100001454
 dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_3_HexNAc_2_NeuAc_1_ = 100001455
 Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc. More...
 
 UNIMOD_Hex_4_HexNAc_2_Pent_1_ = 100001456
 Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_3_HexNAc_3_Pent_1_ = 100001457
 Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent. More...
 
 UNIMOD_Hex_5_HexNAc_2_Phos_1_ = 100001458
 Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_ = 100001459
 dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_7_HexNAc_1_ = 100001460
 Hex(7)HexNAc(1): Hex(7) HexNAc. More...
 
 UNIMOD_Hex_4_HexNAc_2_NeuAc_1_ = 100001461
 Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_2_ = 100001462
 dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_ = 100001463
 dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent. More...
 
 UNIMOD_Hex_3_HexNAc_4_Sulf_1_ = 100001464
 Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf. More...
 
 UNIMOD_Hex_6_HexNAc_2_ = 100001465
 Hex(6)HexNAc(2): Hex(6) HexNAc(2). More...
 
 UNIMOD_Hex_4_HexNAc_3_Pent_1_ = 100001466
 Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_ = 100001467
 dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3). More...
 
 UNIMOD_Hex_5_HexNAc_3_ = 100001468
 Hex(5)HexNAc(3): Hex(5) HexNAc(3). More...
 
 UNIMOD_Hex_3_HexNAc_4_Pent_1_ = 100001469
 Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent. More...
 
 UNIMOD_Hex_6_HexNAc_2_Phos_1_ = 100001470
 Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_ = 100001471
 dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_ = 100001472
 dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent. More...
 
 UNIMOD_Hex_8_HexNAc_1_ = 100001473
 Hex(8)HexNAc(1): Hex(8) HexNAc. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_ = 100001474
 dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_ = 100001475
 dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_ = 100001476
 dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf. More...
 
 UNIMOD_dHex_1_Hex_6_HexNAc_2_ = 100001477
 dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_ = 100001478
 dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent. More...
 
 UNIMOD_Hex_4_HexNAc_4_Sulf_1_ = 100001479
 Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf. More...
 
 UNIMOD_Hex_7_HexNAc_2_ = 100001480
 Hex(7)HexNAc(2): Hex(7) HexNAc(2). More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_3_ = 100001481
 dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3). More...
 
 UNIMOD_Hex_5_HexNAc_3_Pent_1_ = 100001482
 Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent. More...
 
 UNIMOD_Hex_4_HexNAc_3_NeuGc_1_ = 100001483
 Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_ = 100001484
 dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_ = 100001485
 dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent. More...
 
 UNIMOD_Hex_3_HexNAc_5_Sulf_1_ = 100001486
 Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf. More...
 
 UNIMOD_Hex_6_HexNAc_3_ = 100001487
 Hex(6)HexNAc(3): Hex(6) HexNAc(3). More...
 
 UNIMOD_Hex_3_HexNAc_4_NeuAc_1_ = 100001488
 Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc. More...
 
 UNIMOD_Hex_4_HexNAc_4_Pent_1_ = 100001489
 Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent. More...
 
 UNIMOD_Hex_7_HexNAc_2_Phos_1_ = 100001490
 Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos. More...
 
 UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_ = 100001491
 Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_ = 100001492
 dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_ = 100001493
 dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_ = 100001494
 dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2). More...
 
 UNIMOD_Hex_6_HexNAc_3_Phos_1_ = 100001495
 Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos. More...
 
 UNIMOD_Hex_4_HexNAc_5_ = 100001496
 Hex(4)HexNAc(5): Hex(4) HexNAc(5). More...
 
 UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_ = 100001497
 dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent. More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_ = 100001498
 dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_ = 100001499
 dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf. More...
 
 UNIMOD_dHex_1_Hex_7_HexNAc_2_ = 100001500
 dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_ = 100001501
 dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc. More...
 
 UNIMOD_Hex_7_HexNAc_2_Phos_2_ = 100001502
 Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2). More...
 
 UNIMOD_Hex_5_HexNAc_4_Sulf_1_ = 100001503
 Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf. More...
 
 UNIMOD_Hex_8_HexNAc_2_ = 100001504
 Hex(8)HexNAc(2): Hex(8) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_ = 100001505
 dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_ = 100001506
 dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_ = 100001507
 dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_ = 100001508
 dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf. More...
 
 UNIMOD_dHex_1_Hex_6_HexNAc_3_ = 100001509
 dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_ = 100001510
 dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_3_Hex_3_HexNAc_4_ = 100001511
 dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_ = 100001512
 dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent. More...
 
 UNIMOD_Hex_4_HexNAc_5_Sulf_1_ = 100001513
 Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf. More...
 
 UNIMOD_Hex_7_HexNAc_3_ = 100001514
 Hex(7)HexNAc(3): Hex(7) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_ = 100001515
 dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_ = 100001516
 Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent. More...
 
 UNIMOD_Hex_3_HexNAc_6_Sulf_1_ = 100001517
 Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf. More...
 
 UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_ = 100001518
 dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_5_ = 100001519
 dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_ = 100001520
 dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_7_HexNAc_3_Phos_1_ = 100001521
 Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos. More...
 
 UNIMOD_Hex_6_HexNAc_4_Me_3_ = 100001522
 Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3). More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_ = 100001523
 dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf. More...
 
 UNIMOD_Hex_4_HexNAc_3_NeuAc_2_ = 100001524
 Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_ = 100001525
 dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3). More...
 
 UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_ = 100001526
 dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_ = 100001527
 dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_ = 100001528
 dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_ = 100001529
 dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc. More...
 
 UNIMOD_Hex_3_HexNAc_6_Sulf_2_ = 100001530
 Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2). More...
 
 UNIMOD_Hex_9_HexNAc_2_ = 100001531
 Hex(9)HexNAc(2): Hex(9) HexNAc(2). More...
 
 UNIMOD_Hex_4_HexNAc_6_ = 100001532
 Hex(4)HexNAc(6): Hex(4) HexNAc(6). More...
 
 UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_ = 100001533
 dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_ = 100001534
 dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_ = 100001535
 dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent. More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_ = 100001536
 dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf. More...
 
 UNIMOD_dHex_1_Hex_7_HexNAc_3_ = 100001537
 dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_ = 100001538
 dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent. More...
 
 UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_ = 100001539
 dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2). More...
 
 UNIMOD_Hex_3_HexNAc_7_ = 100001540
 Hex(3)HexNAc(7): Hex(3) HexNAc(7). More...
 
 UNIMOD_dHex_2_Hex_5_HexNAc_4_ = 100001541
 dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4). More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_ = 100001542
 dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_ = 100001543
 dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_ = 100001544
 dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent. More...
 
 UNIMOD_Hex_5_HexNAc_4_NeuGc_1_ = 100001545
 Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_ = 100001546
 dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf. More...
 
 UNIMOD_dHex_1_Hex_6_HexNAc_4_ = 100001547
 dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_ = 100001548
 dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_Hex_7_HexNAc_4_ = 100001549
 Hex(7)HexNAc(4): Hex(7) HexNAc(4). More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_ = 100001550
 dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf. More...
 
 UNIMOD_Hex_4_HexNAc_5_NeuAc_1_ = 100001551
 Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc. More...
 
 UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_ = 100001552
 Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent. More...
 
 UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_ = 100001553
 dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_ = 100001554
 dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos. More...
 
 UNIMOD_dHex_1_Hex_5_HexNAc_5_ = 100001555
 dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_ = 100001556
 dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf. More...
 
 UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_ = 100001557
 dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_7_Sulf_1_ = 100001558
 Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf. More...
 
 UNIMOD_Hex_6_HexNAc_5_ = 100001559
 Hex(6)HexNAc(5): Hex(6) HexNAc(5). More...
 
 UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_ = 100001560
 Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_6_NeuAc_1_ = 100001561
 Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_6_ = 100001562
 dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuGc_1_ = 100001563
 Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_1_ = 100001564
 dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc. More...
 
 UNIMOD_HexNAc_3_Sulf_1_ = 100001565
 HexNAc(3)Sulf(1): HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_1_ = 100001566
 Hex(3)HexNAc(1): Hex(3) HexNAc. More...
 
 UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_ = 100001567
 Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf. More...
 
 UNIMOD_HexNAc_2_NeuAc_1_ = 100001568
 HexNAc(2)NeuAc(1): HexNAc(2) NeuAc. More...
 
 UNIMOD_HexNAc_1_Kdn_2_ = 100001570
 HexNAc(1)Kdn(2): HexNAc Kdn(2). More...
 
 UNIMOD_Hex_3_HexNAc_1_Me_1_ = 100001571
 Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me. More...
 
 UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_ = 100001572
 Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf. More...
 
 UNIMOD_HexNAc_2_NeuGc_1_ = 100001573
 HexNAc(2)NeuGc(1): HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_4_Phos_1_ = 100001575
 Hex(4)Phos(1): Hex(4) Phos. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_ = 100001577
 Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf. More...
 
 UNIMOD_Hex_1_HexA_1_HexNAc_2_ = 100001578
 Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_ = 100001579
 dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf. More...
 
 UNIMOD_dHex_1_HexNAc_3_ = 100001580
 dHex(1)HexNAc(3): DHex HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_ = 100001581
 dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn. More...
 
 UNIMOD_Hex_1_HexNAc_3_ = 100001582
 Hex(1)HexNAc(3): Hex HexNAc(3). More...
 
 UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_ = 100001583
 HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_ = 100001584
 dHex(2)Hex(3): DHex(2) Hex(3). More...
 
 UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_ = 100001585
 Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexA_1_ = 100001586
 dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_ = 100001587
 dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_ = 100001588
 dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc. More...
 
 UNIMOD_Hex_2_HexNAc_2_Sulf_1_ = 100001589
 Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf. More...
 
 UNIMOD_Hex_5_ = 100001590
 Hex(5): Hex(5). More...
 
 UNIMOD_HexNAc_4_ = 100001591
 HexNAc(4): HexNAc(4). More...
 
 UNIMOD_HexNAc_1_NeuGc_2_ = 100001592
 HexNAc(1)NeuGc(2): HexNAc NeuGc(2). More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_ = 100001593
 dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_1_ = 100001594
 dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc. More...
 
 UNIMOD_Hex_2_HexNAc_1_NeuGc_1_ = 100001595
 Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_1_ = 100001596
 dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc. More...
 
 UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_ = 100001597
 dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc. More...
 
 UNIMOD_Hex_1_HexNAc_3_Sulf_1_ = 100001598
 Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_4_HexNAc_1_ = 100001599
 Hex(4)HexNAc(1): Hex(4) HexNAc. More...
 
 UNIMOD_Hex_1_HexNAc_2_NeuAc_1_ = 100001600
 Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc. More...
 
 UNIMOD_Hex_1_HexNAc_2_NeuGc_1_ = 100001602
 Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_5_Phos_1_ = 100001604
 Hex(5)Phos(1): Hex(5) Phos. More...
 
 UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_ = 100001606
 dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_ = 100001607
 dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_3_ = 100001608
 dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_ = 100001609
 dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf. More...
 
 UNIMOD_Hex_2_HexNAc_3_ = 100001610
 Hex(2)HexNAc(3): Hex(2) HexNAc(3). More...
 
 UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_ = 100001611
 Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_dHex_2_Hex_4_ = 100001612
 dHex(2)Hex(4): DHex(2) Hex(4). More...
 
 UNIMOD_dHex_2_HexNAc_2_Kdn_1_ = 100001614
 dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_ = 100001615
 dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_1_HexNAc_4_ = 100001616
 dHex(1)HexNAc(4): DHex HexNAc(4). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_ = 100001617
 Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_ = 100001618
 dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuGc_2_ = 100001619
 Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_ = 100001620
 Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2). More...
 
 UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_ = 100001621
 dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_ = 100001622
 dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_ = 100001623
 Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_ = 100001624
 dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_ = 100001625
 dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc. More...
 
 UNIMOD_Hex_2_HexNAc_3_Sulf_1_ = 100001626
 Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_5_HexNAc_1_ = 100001627
 Hex(5)HexNAc(1): Hex(5) HexNAc. More...
 
 UNIMOD_HexNAc_5_ = 100001628
 HexNAc(5): HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuGc_1_ = 100001629
 dHex(1)Hex(1)HexNAc(2)NeuGc(1): DHex Hex HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_ = 100001630
 Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2). More...
 
 UNIMOD_Hex_2_HexNAc_2_NeuGc_1_ = 100001631
 Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_5_Phos_3_ = 100001632
 Hex(5)Phos(3): Hex(5) Phos(3). More...
 
 UNIMOD_Hex_6_Phos_1_ = 100001633
 Hex(6)Phos(1): Hex(6) Phos. More...
 
 UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_ = 100001634
 dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_ = 100001635
 dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf. More...
 
 UNIMOD_Hex_1_HexNAc_3_NeuAc_1_ = 100001636
 Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_1_HexNAc_3_ = 100001637
 dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3). More...
 
 UNIMOD_Hex_1_HexNAc_3_NeuGc_1_ = 100001638
 Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_ = 100001639
 dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_ = 100001640
 dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_ = 100001641
 dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3). More...
 
 UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001642
 Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_ = 100001643
 dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_ = 100001644
 dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_4_ = 100001645
 dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4). More...
 
 UNIMOD_Hex_2_HexNAc_4_ = 100001646
 Hex(2)HexNAc(4): Hex(2) HexNAc(4). More...
 
 UNIMOD_Hex_2_HexNAc_1_NeuGc_2_ = 100001647
 Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2). More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_1_ = 100001648
 dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc. More...
 
 UNIMOD_Hex_1_HexNAc_2_NeuAc_2_ = 100001649
 Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2). More...
 
 UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_ = 100001650
 dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_ = 100001651
 dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_1_HexNAc_5_ = 100001652
 dHex(1)HexNAc(5): DHex HexNAc(5). More...
 
 UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_ = 100001653
 dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc. More...
 
 UNIMOD_dHex_3_Hex_2_HexNAc_2_ = 100001654
 dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2). More...
 
 UNIMOD_Hex_3_HexNAc_3_Sulf_1_ = 100001655
 Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_ = 100001656
 dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_ = 100001657
 dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_ = 100001658
 dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc. More...
 
 UNIMOD_Hex_6_Phos_3_ = 100001659
 Hex(6)Phos(3): Hex(6) Phos(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_ = 100001660
 dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_ = 100001661
 dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc. More...
 
 UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_ = 100001662
 Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_ = 100001663
 dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf. More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_3_ = 100001664
 Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3). More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuGc_1_ = 100001665
 Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001666
 dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_ = 100001667
 dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_ = 100001668
 dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_ = 100001669
 dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_ = 100001670
 dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_4_ = 100001671
 dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuGc_3_ = 100001672
 Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3). More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_ = 100001673
 dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_ = 100001674
 dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_ = 100001675
 dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2). More...
 
 UNIMOD_dHex_3_HexNAc_3_Kdn_1_ = 100001676
 dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn. More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_ = 100001678
 Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_ = 100001679
 dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_2_HexNAc_5_ = 100001680
 dHex(2)HexNAc(5): DHex(2) HexNAc(5). More...
 
 UNIMOD_Hex_2_HexNAc_2_NeuAc_2_ = 100001681
 Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2). More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_ = 100001682
 dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_ = 100001683
 dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_ = 100001684
 dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_2_HexNAc_5_ = 100001685
 Hex(2)HexNAc(5): Hex(2) HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_ = 100001686
 dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc. More...
 
 UNIMOD_Hex_1_HexNAc_3_NeuAc_2_ = 100001687
 Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_ = 100001688
 dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_3_Hex_2_HexNAc_3_ = 100001689
 dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3). More...
 
 UNIMOD_Hex_7_Phos_3_ = 100001690
 Hex(7)Phos(3): Hex(7) Phos(3). More...
 
 UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_ = 100001691
 dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2). More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuAc_1_ = 100001692
 Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_ = 100001693
 dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2). More...
 
 UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_ = 100001694
 Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001695
 dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuGc_1_ = 100001696
 Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_ = 100001697
 dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_ = 100001698
 dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_ = 100001699
 dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf. More...
 
 UNIMOD_Hex_2_HexNAc_4_NeuAc_1_ = 100001700
 Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_4_ = 100001701
 dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4). More...
 
 UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_ = 100001702
 dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_4_HexNAc_3_Kdn_1_ = 100001703
 dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn. More...
 
 UNIMOD_Hex_2_HexNAc_1_NeuGc_3_ = 100001705
 Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3). More...
 
 UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_ = 100001706
 dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_ = 100001707
 dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_ = 100001708
 dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2). More...
 
 UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_ = 100001709
 dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn. More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_ = 100001711
 Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_2_NeuAc_2_ = 100001712
 Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2). More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_ = 100001713
 Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_ = 100001714
 dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_ = 100001715
 dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc. More...
 
 UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_ = 100001716
 dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuAc_2_ = 100001717
 Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2). More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_ = 100001718
 dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_4_Hex_2_HexNAc_3_ = 100001719
 dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3). More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_ = 100001720
 Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_ = 100001721
 dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc. More...
 
 UNIMOD_dHex_3_Hex_3_HexNAc_3_ = 100001722
 dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3). More...
 
 UNIMOD_Hex_8_Phos_3_ = 100001723
 Hex(8)Phos(3): Hex(8) Phos(3). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_ = 100001724
 dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf. More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuGc_2_ = 100001725
 Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2). More...
 
 UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_ = 100001726
 dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn. More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_ = 100001727
 dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_3_Hex_2_HexNAc_4_ = 100001728
 dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuGc_4_ = 100001729
 Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4). More...
 
 UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_ = 100001730
 dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn. More...
 
 UNIMOD_Hex_4_HexNAc_4_Sulf_2_ = 100001732
 Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2). More...
 
 UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_ = 100001733
 dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn. More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_5_ = 100001735
 dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5). More...
 
 UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_ = 100001736
 dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf. More...
 
 UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_ = 100001737
 dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuAc_2_ = 100001738
 Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_ = 100001739
 dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_4_Hex_3_HexNAc_3_ = 100001740
 dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuGc_1_ = 100001741
 dHex(2)Hex(3)HexNAc(3)NeuGc(1): DHex(2) Hex(3) HexNAc(3) NeuGc. More...
 
 UNIMOD_Hex_9_Phos_3_ = 100001742
 Hex(9)Phos(3): Hex(9) Phos(3). More...
 
 UNIMOD_dHex_2_HexNAc_7_ = 100001743
 dHex(2)HexNAc(7): DHex(2) HexNAc(7). More...
 
 UNIMOD_Hex_2_HexNAc_1_NeuGc_4_ = 100001744
 Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4). More...
 
 UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_ = 100001745
 Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_5_ = 100001746
 dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_ = 100001747
 dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3). More...
 
 UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_ = 100001748
 dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf. More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuAc_3_ = 100001749
 Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_ = 100001750
 dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2). More...
 
 UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_ = 100001751
 dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc. More...
 
 UNIMOD_Hex_2_HexNAc_3_NeuGc_3_ = 100001752
 Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3). More...
 
 UNIMOD_Hex_10_Phos_3_ = 100001753
 Hex(10)Phos(3): Hex(10) Phos(3). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_ = 100001754
 dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuGc_5_ = 100001755
 Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5). More...
 
 UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_ = 100001756
 Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2). More...
 
 UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_ = 100001757
 Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_ = 100001758
 dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2). More...
 
 UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_ = 100001759
 Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3). More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_2_ = 100001760
 dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_2_ = 100001761
 dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_2_HexNAc_3_ = 100001762
 dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3). More...
 
 UNIMOD_Hex_3_HexNAc_3_ = 100001763
 Hex(3)HexNAc(3): Hex(3) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_ = 100001764
 dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_2_ = 100001765
 dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_2_ = 100001766
 dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2). More...
 
 UNIMOD_dHex_2_Hex_2_HexNAc_3_ = 100001767
 dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_3_ = 100001768
 dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3). More...
 
 UNIMOD_Hex_4_HexNAc_3_ = 100001769
 Hex(4)HexNAc(3): Hex(4) HexNAc(3). More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_2_ = 100001770
 dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2). More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_3_ = 100001771
 dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3). More...
 
 UNIMOD_Hex_3_HexNAc_5_ = 100001772
 Hex(3)HexNAc(5): Hex(3) HexNAc(5). More...
 
 UNIMOD_Hex_4_HexNAc_3_NeuAc_1_ = 100001773
 Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_3_HexNAc_4_ = 100001774
 dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_5_ = 100001775
 dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5). More...
 
 UNIMOD_Hex_3_HexNAc_6_ = 100001776
 Hex(3)HexNAc(6): Hex(3) HexNAc(6). More...
 
 UNIMOD_Hex_4_HexNAc_4_NeuAc_1_ = 100001777
 Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_4_ = 100001778
 dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4). More...
 
 UNIMOD_Hex_6_HexNAc_4_ = 100001779
 Hex(6)HexNAc(4): Hex(6) HexNAc(4). More...
 
 UNIMOD_Hex_5_HexNAc_5_ = 100001780
 Hex(5)HexNAc(5): Hex(5) HexNAc(5). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_6_ = 100001781
 dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6). More...
 
 UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_ = 100001782
 dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc. More...
 
 UNIMOD_dHex_3_Hex_4_HexNAc_4_ = 100001783
 dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4). More...
 
 UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_ = 100001784
 dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc. More...
 
 UNIMOD_dHex_2_Hex_4_HexNAc_5_ = 100001785
 dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5). More...
 
 UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_ = 100001786
 Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc. More...
 
 UNIMOD_Label_13C_2_15N_2_ = 100001787
 Label:13C(2)15N(2): 13C(2) 15N(2). More...
 
 UNIMOD_Xlink_DSS_NH2 = 100001789
 Xlink:DSS-NH2: Ammonium-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus. More...
 
 UNIMOD_NQIGG = 100001799
 NQIGG: SUMOylation by Giardia lamblia. More...
 
 UNIMOD_Carboxyethylpyrrole = 100001800
 Carboxyethylpyrrole: Carboxyethylpyrrole. More...
 
 UNIMOD_Fluorescein_tyramine = 100001801
 Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity. More...
 
 UNIMOD_GEE = 100001824
 GEE: Transamidation of glycine ethyl ester to glutamine. More...
 
 UNIMOD_RNPXL = 100001825
 RNPXL: Simulate peptide-RNA conjugates. More...
 
 UNIMOD_Glu__pyro_Glu_Methyl = 100001826
 Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation. More...
 
 UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_ = 100001827
 Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium. More...
 
 UO_unit = 200000000
 unit: A unit of measurement is a standardized quantity of a physical quality. More...
 
 UO_length_unit = 200000001
 length unit: A unit which is a standard measure of the distance between two points. More...
 
 UO_mass_unit = 200000002
 mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object. More...
 
 UO_time_unit = 200000003
 time unit: A unit which is a standard measure of the dimension in which events occur in sequence. More...
 
 UO_electric_current_unit = 200000004
 electric current unit: A unit which is a standard measure of the flow of electric charge. More...
 
 UO_temperature_unit = 200000005
 temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter. More...
 
 UO_substance_unit = 200000006
 substance unit: A unit which is a standardised quantity of an element or compound with uniform composition. More...
 
 UO_luminous_intensity_unit = 200000007
 luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction. More...
 
 UO_meter = 200000008
 meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second. More...
 
 UO_kilogram = 200000009
 kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France. More...
 
 UO_second = 200000010
 second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom. More...
 
 UO_ampere = 200000011
 ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length. More...
 
 UO_kelvin = 200000012
 kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water. More...
 
 UO_mole = 200000013
 mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12. More...
 
 UO_candela = 200000014
 candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian. More...
 
 UO_centimeter = 200000015
 centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m. More...
 
 UO_millimeter = 200000016
 millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m. More...
 
 UO_micrometer = 200000017
 micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m. More...
 
 UO_nanometer = 200000018
 nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m. More...
 
 UO_angstrom = 200000019
 angstrom: A length unit which is equal to 10 [-10] m. More...
 
 UO_picometer = 200000020
 picometer: A length unit which is equal to 10^[-12] m. More...
 
 UO_gram = 200000021
 gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg. More...
 
 UO_milligram = 200000022
 milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g. More...
 
 UO_microgram = 200000023
 microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g. More...
 
 UO_nanogram = 200000024
 nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g. More...
 
 UO_picogram = 200000025
 picogram: A mass unit which is equal to 10^[-12] g. More...
 
 UO_femtogram = 200000026
 femtogram: A mass unit which is equal to 10^[-15] g. More...
 
 UO_degree_celsius = 200000027
 degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K. More...
 
 UO_millisecond = 200000028
 millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s. More...
 
 UO_microsecond = 200000029
 microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s. More...
 
 UO_picosecond = 200000030
 picosecond: A time unit which is equal to 10^[-12] s. More...
 
 UO_minute = 200000031
 minute: A time unit which is equal to 60 seconds. More...
 
 UO_hour = 200000032
 hour: A time unit which is equal to 3600 seconds or 60 minutes. More...
 
 UO_day = 200000033
 day: A time unit which is equal to 24 hours. More...
 
 UO_week = 200000034
 week: A time unit which is equal to 7 days. More...
 
 UO_month = 200000035
 month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days. More...
 
 UO_year = 200000036
 year: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days. More...
 
 UO_milliampere = 200000037
 milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A. More...
 
 UO_microampere = 200000038
 microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A. More...
 
 UO_micromole = 200000039
 micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol. More...
 
 UO_millimole = 200000040
 millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol. More...
 
 UO_nanomole = 200000041
 nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol. More...
 
 UO_picomole = 200000042
 picomole: A substance unit equal to 10^[-12] mol. More...
 
 UO_femtomole = 200000043
 femtomole: A substance unit equal to 10^[-15] mol. More...
 
 UO_attomole = 200000044
 attomole: A substance unit equal to 10^[-18] mol. More...
 
 UO_base_unit = 200000045
 base unit: A unit which is one of a particular measure to which all measures of that type can be related. More...
 
 UO_derived_unit_OBSOLETE = 200000046
 derived unit: A unit which is derived from base units. More...
 
 UO_area_unit = 200000047
 area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface. More...
 
 UO_acceleration_unit = 200000048
 acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction. More...
 
 UO_angular_velocity_unit = 200000049
 angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time. More...
 
 UO_angular_acceleration_unit = 200000050
 angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity. More...
 
 UO_concentration_unit = 200000051
 concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance. More...
 
 UO_mass_density_unit = 200000052
 mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume. More...
 
 UO_luminance_unit = 200000053
 luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area. More...
 
 UO_area_density_unit = 200000054
 area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area. More...
 
 UO_molar_mass_unit = 200000055
 molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules. More...
 
 UO_molar_volume_unit = 200000056
 molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules. More...
 
 UO_momentum_unit = 200000057
 momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity. More...
 
 UO_rotational_frequency_unit = 200000058
 rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time. More...
 
 UO_specific_volume_unit = 200000059
 specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density). More...
 
 UO_speed_velocity_unit = 200000060
 speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity. More...
 
 UO_unit_of_molarity = 200000061
 unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution. More...
 
 UO_molar = 200000062
 molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L). More...
 
 UO_millimolar = 200000063
 millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M. More...
 
 UO_micromolar = 200000064
 micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M. More...
 
 UO_nanomolar = 200000065
 nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M. More...
 
 UO_picomolar = 200000066
 picomolar: A unit of molarity which is equal to 10^[-12] M. More...
 
 UO_unit_of_molality = 200000067
 unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent. More...
 
 UO_molal = 200000068
 molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg). More...
 
 UO_millimolal = 200000069
 millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m. More...
 
 UO_micromolal = 200000070
 micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m. More...
 
 UO_nanomolal = 200000071
 nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m. More...
 
 UO_picomolal = 200000072
 picomolal: A molality unit which is equal to 10^[-12] m. More...
 
 UO_femtomolar = 200000073
 femtomolar: A unit of molarity which is equal to 10^[-15] M. More...
 
 UO_unit_of_normality = 200000074
 unit of normality: A unit of concentration which highlights the chemical nature of salts. More...
 
 UO_normal = 200000075
 normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule. More...
 
 UO_mole_fraction = 200000076
 mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution. More...
 
 UO_meter_per_second_per_second = 200000077
 meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second. More...
 
 UO_radian_per_second_per_second = 200000078
 radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second. More...
 
 UO_radian_per_second = 200000079
 radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute). More...
 
 UO_square_meter = 200000080
 square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long. More...
 
 UO_square_centimeter = 200000081
 square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]. More...
 
 UO_square_millimeter = 200000082
 square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]. More...
 
 UO_kilogram_per_cubic_meter = 200000083
 kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters. More...
 
 UO_gram_per_cubic_centimeter = 200000084
 gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters. More...
 
 UO_candela_per_square_meter = 200000085
 candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter. More...
 
 UO_kilogram_per_square_meter = 200000086
 kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared. More...
 
 UO_kilogram_per_mole = 200000087
 kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound. More...
 
 UO_gram_per_mole = 200000088
 gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound. More...
 
 UO_cubic_meter_per_mole = 200000089
 cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas. More...
 
 UO_cubic_centimeter_per_mole = 200000090
 cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas. More...
 
 UO_kilogram_meter_per_second = 200000091
 kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second. More...
 
 UO_turns_per_second = 200000092
 turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second. More...
 
 UO_cubic_meter_per_kilogram = 200000093
 cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance. More...
 
 UO_meter_per_second = 200000094
 meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second. More...
 
 UO_volume_unit = 200000095
 volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas. More...
 
 UO_cubic_meter = 200000096
 cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters. More...
 
 UO_cubic_centimeter = 200000097
 cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml. More...
 
 UO_milliliter = 200000098
 milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter. More...
 
 UO_liter = 200000099
 liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter. More...
 
 UO_cubic_decimeter = 200000100
 cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L. More...
 
 UO_microliter = 200000101
 microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L. More...
 
 UO_nanoliter = 200000102
 nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L. More...
 
 UO_picoliter = 200000103
 picoliter: A volume unit which is equal to 10^[-12] L. More...
 
 UO_femtoliter = 200000104
 femtoliter: A volume unit which is equal to 10^[-15] L. More...
 
 UO_frequency_unit = 200000105
 frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time. More...
 
 UO_hertz = 200000106
 hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second. More...
 
 UO_force_unit = 200000107
 force unit: A unit which is a standard measure of the force is applied when a mass is accelerated. More...
 
 UO_newton = 200000108
 newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force. More...
 
 UO_pressure_unit = 200000109
 pressure unit: A unit which is a standard measure of the force applied to a given area. More...
 
 UO_pascal = 200000110
 pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2]. More...
 
 UO_energy_unit = 200000111
 energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc). More...
 
 UO_joule = 200000112
 joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force. More...
 
 UO_power_unit = 200000113
 power unit: A unit which is a standard measure power or the rate of doing work. More...
 
 UO_watt = 200000114
 watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second. More...
 
 UO_illuminance_unit = 200000115
 illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area. More...
 
 UO_lux = 200000116
 lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2]. More...
 
 UO_luminous_flux_unit = 200000117
 luminous flux unit: A unit which is a standard measure of the flow of radiant energy. More...
 
 UO_lumen = 200000118
 lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela. More...
 
 UO_catalytic_activity_unit = 200000119
 catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst. More...
 
 UO_katal = 200000120
 katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second. More...
 
 UO_angle_unit = 200000121
 angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes. More...
 
 UO_plane_angle_unit = 200000122
 plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane. More...
 
 UO_radian = 200000123
 radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds. More...
 
 UO_solid_angle_unit = 200000124
 solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point. More...
 
 UO_steradian = 200000125
 steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared. More...
 
 UO_radiation_unit = 200000127
 radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source. More...
 
 UO_activity__of_a_radionuclide__unit = 200000128
 activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance. More...
 
 UO_absorbed_dose_unit = 200000129
 absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue. More...
 
 UO_dose_equivalent_unit = 200000130
 dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect. More...
 
 UO_exposure_unit = 200000131
 exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured. More...
 
 UO_becquerel = 200000132
 becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps). More...
 
 UO_curie = 200000133
 curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps). More...
 
 UO_gray = 200000134
 gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter. More...
 
 UO_rad = 200000135
 rad: An absorbed dose unit which is equal to 0.01 gray (Gy). More...
 
 UO_roentgen = 200000136
 roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs. More...
 
 UO_sievert = 200000137
 sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter. More...
 
 UO_millisievert = 200000138
 millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv. More...
 
 UO_microsievert = 200000139
 microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv. More...
 
 UO_Roentgen_equivalent_man = 200000140
 Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem. More...
 
 UO_microgray = 200000141
 microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy. More...
 
 UO_milligray = 200000142
 milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy. More...
 
 UO_nanogray = 200000143
 nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy. More...
 
 UO_nanosievert = 200000144
 nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv. More...
 
 UO_millicurie = 200000145
 millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci. More...
 
 UO_microcurie = 200000146
 microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci. More...
 
 UO_disintegrations_per_minute = 200000147
 disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute. More...
 
 UO_counts_per_minute = 200000148
 counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute. More...
 
 UO_nanosecond = 200000150
 nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s. More...
 
 UO_century = 200000151
 century: A time unit which is equal to 100 years. More...
 
 UO_half_life = 200000152
 half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration. More...
 
 UO_foot_candle = 200000153
 foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux. More...
 
 UO_irradiance_unit = 200000154
 irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area. More...
 
 UO_watt_per_square_meter = 200000155
 watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area. More...
 
 UO_einstein_per_square_meter_per_second = 200000156
 einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number. More...
 
 UO_light_unit = 200000157
 light unit: A unit which is a standard measure of the intensity of light. More...
 
 UO_watt_per_steradian_per_square_meter = 200000158
 watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction. More...
 
 UO_radiant_intensity_unit = 200000159
 radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation. More...
 
 UO_microeinstein_per_square_meter_per_second = 200000160
 microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2]. More...
 
 UO_radiance_unit = 200000161
 radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves. More...
 
 UO_watt_per_steradian = 200000162
 watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian. More...
 
 UO_mass_percentage = 200000163
 mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture. More...
 
 UO_mass_volume_percentage = 200000164
 mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture. More...
 
 UO_volume_percentage = 200000165
 volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution. More...
 
 UO_parts_per_notation_unit = 200000166
 parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance. More...
 
 UO_parts_per_hundred = 200000167
 parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same. More...
 
 UO_parts_per_thousand = 200000168
 parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same. More...
 
 UO_parts_per_million = 200000169
 parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6]. More...
 
 UO_parts_per_billion = 200000170
 parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9]. More...
 
 UO_parts_per_trillion = 200000171
 parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12]. More...
 
 UO_parts_per_quadrillion = 200000172
 parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15]. More...
 
 UO_gram_per_milliliter = 200000173
 gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter. More...
 
 UO_kilogram_per_liter = 200000174
 kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters. More...
 
 UO_gram_per_liter = 200000175
 gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters. More...
 
 UO_milligram_per_milliliter = 200000176
 milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters. More...
 
 UO_unit_per_volume_unit = 200000177
 unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution. More...
 
 UO_unit_per_milliliter = 200000178
 unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter. More...
 
 UO_unit_per_liter = 200000179
 unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter. More...
 
 UO_mass_per_unit_volume = 200000180
 mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density). More...
 
 UO_enzyme_unit = 200000181
 enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute. More...
 
 UO_density_unit = 200000182
 density unit: A unit which is a standard measure of the influence exerted by some mass. More...
 
 UO_linear_density_unit = 200000183
 linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object. More...
 
 UO_kilogram_per_meter = 200000184
 kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter. More...
 
 UO_degree = 200000185
 degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad. More...
 
 UO_dimensionless_unit = 200000186
 dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units. More...
 
 UO_percent = 200000187
 percent: A dimensionless ratio unit which denotes numbers as fractions of 100. More...
 
 UO_pi = 200000188
 pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry. More...
 
 UO_count_unit = 200000189
 count unit: A dimensionless unit which denotes a simple count of things. More...
 
 UO_ratio = 200000190
 ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another. More...
 
 UO_fraction = 200000191
 fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator). More...
 
 UO_molecule_count = 200000192
 molecule count: A dimensionless count unit which denotes the number of molecules. More...
 
 UO_purity_percentage = 200000193
 purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial. More...
 
 UO_confluence_percentage = 200000194
 confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture). More...
 
 UO_degree_fahrenheit = 200000195
 degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius. More...
 
 UO_pH = 200000196
 pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+). More...
 
 UO_liter_per_kilogram = 200000197
 liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance. More...
 
 UO_milliliter_per_kilogram = 200000198
 milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg. More...
 
 UO_microliter_per_kilogram = 200000199
 microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg. More...
 
 UO_cell_concentration_unit = 200000200
 cell concentration unit: A concentration unit which denotes the average cell number in a given volume. More...
 
 UO_cells_per_milliliter = 200000201
 cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter. More...
 
 UO_catalytic__activity__concentration_unit = 200000202
 catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume. More...
 
 UO_katal_per_cubic_meter = 200000203
 katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter. More...
 
 UO_katal_per_liter = 200000204
 katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter. More...
 
 UO_volume_per_unit_volume = 200000205
 volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution. More...
 
 UO_milliliter_per_cubic_meter = 200000206
 milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution. More...
 
 UO_milliliter_per_liter = 200000207
 milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution. More...
 
 UO_gram_per_deciliter = 200000208
 gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters. More...
 
 UO_deciliter = 200000209
 deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L. More...
 
 UO_colony_forming_unit = 200000210
 colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers. More...
 
 UO_plaque_forming_unit = 200000211
 plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume. More...
 
 UO_colony_forming_unit_per_volume = 200000212
 colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume. More...
 
 UO_colony_forming_unit_per_milliliter = 200000213
 colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter. More...
 
 UO_plaque_forming_unit_per_volume = 200000214
 plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume. More...
 
 UO_plaque_forming_unit_per_milliliter = 200000215
 plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter. More...
 
 UO_disintegrations_per_second = 200000216
 disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second. More...
 
 UO_electric_potential_difference_unit = 200000217
 electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field. More...
 
 UO_volt = 200000218
 volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy. More...
 
 UO_electric_charge = 200000219
 electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons. More...
 
 UO_coulomb = 200000220
 coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second. More...
 
 UO_dalton = 200000221
 dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state. More...
 
 UO_kilodalton = 200000222
 kilodalton: A mass unit which is equal to one thousand daltons. More...
 
 UO_watt_hour = 200000223
 watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour. More...
 
 UO_kilowatt_hour = 200000224
 kilowatt-hour: An energy unit which is equal to 1,000 watt-hours. More...
 
 UO_magnetic_flux_unit = 200000225
 magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field. More...
 
 UO_weber = 200000226
 weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt. More...
 
 UO_magnetic_flux_density_unit = 200000227
 magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field. More...
 
 UO_tesla = 200000228
 tesla: A magnetic flux density unit which is equal to one weber per square meter. More...
 
 UO_volt_hour = 200000229
 volt-hour: A magnetic flux unit which is equal to 3600 Wb. More...
 
 UO_kilovolt_hour = 200000230
 kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours. More...
 
 UO_information_unit = 200000231
 information unit: A unit which is a standard measure of the amount of information. More...
 
 UO_bit = 200000232
 bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1). More...
 
 UO_byte = 200000233
 byte: An information unit which is equal to 8 bits. More...
 
 UO_kilobyte = 200000234
 kilobyte: An information unit which is equal to 1000 bytes. More...
 
 UO_megabyte = 200000235
 megabyte: An information unit which is equal to 1000 kB. More...
 
 UO_image_resolution_unit = 200000236
 image resolution unit: An information unit which is a standard measure of the detail an image holds. More...
 
 UO_chroma_sampling_unit = 200000237
 chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image. More...
 
 UO_dynamic_range_unit = 200000238
 dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel. More...
 
 UO_spatial_resolution_unit = 200000239
 spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels. More...
 
 UO_dots_per_inch = 200000240
 dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space. More...
 
 UO_micron_pixel = 200000241
 micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer. More...
 
 UO_pixels_per_inch = 200000242
 pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions. More...
 
 UO_pixels_per_millimeter = 200000243
 pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image. More...
 
 UO_base_pair = 200000244
 base pair: A count unit which contains one nucleotide. More...
 
 UO_kibibyte = 200000245
 kibibyte: An information unit which is equal to 1024 B. More...
 
 UO_mebibyte = 200000246
 mebibyte: An information unit which is equal to 1024 KiB. More...
 
 UO_millivolt = 200000247
 millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V. More...
 
 UO_kilovolt = 200000248
 kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V. More...
 
 UO_microvolt = 200000249
 microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V. More...
 
 UO_nanovolt = 200000250
 nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V. More...
 
 UO_picovolt = 200000251
 picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V. More...
 
 UO_megavolt = 200000252
 megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V. More...
 
 UO_surface_tension_unit = 200000253
 surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces. More...
 
 UO_newton_per_meter = 200000254
 newton per meter: A surface tension unit which is equal to one newton per meter. More...
 
 UO_dyne_per_cm = 200000255
 dyne per cm: A surface tension unit which is equal to one dyne per centimeter. More...
 
 UO_viscosity_unit = 200000256
 viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow. More...
 
 UO_pascal_second = 200000257
 pascal second: A viscosity unit which is equal to one pascale per second. More...
 
 UO_poise = 200000258
 poise: A viscosity unit which is equal to one dyne second per square centimeter. More...
 
 UO_decibel = 200000259
 decibel: An ratio unit which is an indicator of sound power per unit area. More...
 
 UO_effective_dose_unit = 200000260
 effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human. More...
 
 UO_conduction_unit = 200000261
 conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium. More...
 
 UO_electrical_conduction_unit = 200000262
 electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor). More...
 
 UO_heat_conduction_unit = 200000263
 heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature. More...
 
 UO_siemens = 200000264
 siemens: An electrical conduction unit which is equal to A/V. More...
 
 UO_watt_per_meter_kelvin = 200000265
 watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin. More...
 
 UO_electronvolt = 200000266
 electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J. More...
 
 UO_electric_field_strength_unit = 200000267
 electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart. More...
 
 UO_volt_per_meter = 200000268
 volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart. More...
 
 UO_absorbance_unit = 200000269
 absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light. More...
 
 UO_volumetric_flow_rate_unit = 200000270
 volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time . More...
 
 UO_microliters_per_minute = 200000271
 microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute. More...
 
 UO_millimetres_of_mercury = 200000272
 millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth. More...
 
 UO_milligram_per_liter = 200000273
 milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters. More...
 
 UO_microgram_per_milliliter = 200000274
 microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters. More...
 
 UO_nanogram_per_milliliter = 200000275
 nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters. More...
 
 UO_amount_per_container = 200000276
 amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container. More...
 
 UO_ug_disk = 200000277
 ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited. More...
 
 UO_nmole_disk = 200000278
 nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited. More...
 
 UO_milliunits_per_milliliter = 200000279
 milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter. More...
 
 UO_rate_unit = 200000280
 rate unit: A unit which represents a standard measurement occurrence of a process per unit time. More...
 
 UO_count_per_nanomolar_second = 200000281
 count per nanomolar second: A rate unit which is equal to one over one nanomolar second. More...
 
 UO_count_per_molar_second = 200000282
 count per molar second: A rate unit which is equal to one over one molar second. More...
 
 UO_kilogram_per_hectare = 200000283
 kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares.. More...
 
 UO_count_per_nanomolar = 200000284
 count per nanomolar: A rate unit which is equal to one over one nanomolar. More...
 
 UO_count_per_molar = 200000285
 count per molar: A rate unit which is equal to one over one molar. More...
 

Macro Definition Documentation

#define _PSI_MS_OBO_

Definition at line 42 of file cv.hpp.

#define _UNIMOD_OBO_

Definition at line 72 of file cv.hpp.

#define _UNIT_OBO_

Definition at line 77 of file cv.hpp.

Variable Documentation

CVID_Unknown = -1
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies = 0

Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.

Definition at line 100 of file cv.hpp.

MS_sample_number = 1000001

sample number: A reference number relevant to the sample under study.

Definition at line 103 of file cv.hpp.

Referenced by test(), and testSourceFile().

MS_sample_name = 1000002

sample name: A reference string relevant to the sample under study.

Definition at line 106 of file cv.hpp.

Referenced by testCVMap(), testCVMapIO(), testRegexCVMap(), testRegexCVMapIO(), testSample(), and testSourceFile().

MS_sample_state = 1000003

sample state: The chemical phase of a pure sample, or the state of a mixed sample.

Definition at line 109 of file cv.hpp.

MS_sample_mass = 1000004

sample mass: Total mass of sample used.

Definition at line 112 of file cv.hpp.

MS_sample_volume = 1000005

sample volume: Total volume of solution used.

Definition at line 115 of file cv.hpp.

MS_sample_concentration = 1000006

sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.

Definition at line 118 of file cv.hpp.

MS_inlet_type = 1000007

inlet type: The nature of the sample inlet.

Definition at line 121 of file cv.hpp.

MS_ionization_type = 1000008

ionization type: The method by which gas phase ions are generated from the sample.

Definition at line 124 of file cv.hpp.

Referenced by main(), testComponent(), testCVParam(), testNamedParamContainer(), testParamContainer(), testParamGroup(), testPrecursor(), testProduct(), testSample(), testScan(), testSoftware(), testSourceFile(), testSpectrum(), and testSpectrumListSimple().

MS_ionization_mode_OBSOLETE = 1000009

ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.

Definition at line 127 of file cv.hpp.

MS_analyzer_type_OBSOLETE = 1000010

analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.

Definition at line 130 of file cv.hpp.

MS_mass_resolution = 1000011

mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.

Definition at line 133 of file cv.hpp.

MS_resolution_measurement_method = 1000012

resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.

Definition at line 136 of file cv.hpp.

MS_resolution_type_OBSOLETE = 1000013

resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.

Definition at line 139 of file cv.hpp.

MS_accuracy = 1000014

accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.

Definition at line 142 of file cv.hpp.

Referenced by testOtherRelations().

MS_scan_rate = 1000015

scan rate: Rate in Th/sec for scanning analyzers.

Definition at line 145 of file cv.hpp.

MS_scan_start_time = 1000016

scan start time: The time that an analyzer started a scan, relative to the start of the MS run.

Definition at line 148 of file cv.hpp.

Referenced by createSpectrumList(), initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), printSpectrumList(), test(), test_v3(), testScan(), testScanList(), testSpectrum(), and testWrapSortScanTime().

MS_Scan_Function_OBSOLETE = 1000017

Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.

Definition at line 151 of file cv.hpp.

MS_scan_direction = 1000018

scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).

Definition at line 154 of file cv.hpp.

MS_scan_law = 1000019

scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.

Definition at line 157 of file cv.hpp.

MS_scanning_method_OBSOLETE = 1000020

scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.

Definition at line 160 of file cv.hpp.

MS_reflectron_state = 1000021

reflectron state: Status of the reflectron, turned on or off.

Definition at line 163 of file cv.hpp.

MS_TOF_Total_Path_Length = 1000022

TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.

Definition at line 166 of file cv.hpp.

MS_isolation_width_OBSOLETE = 1000023

isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.

Definition at line 169 of file cv.hpp.

MS_final_MS_exponent = 1000024

final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).

Definition at line 172 of file cv.hpp.

MS_magnetic_field_strength = 1000025

magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.

Definition at line 175 of file cv.hpp.

B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.

Definition at line 178 of file cv.hpp.

Referenced by testIDTranslation(), and testSynonyms().

MS_detector_type = 1000026

detector type: Type of detector used in the mass spectrometer.

Definition at line 181 of file cv.hpp.

MS_detector_acquisition_mode = 1000027

detector acquisition mode: Method by which detector signal is acquired by the data system.

Definition at line 184 of file cv.hpp.

MS_detector_resolution = 1000028

detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.

Definition at line 187 of file cv.hpp.

MS_sampling_frequency = 1000029

sampling frequency: The rate of signal sampling (measurement) with respect to time.

Definition at line 190 of file cv.hpp.

MS_vendor_OBSOLETE = 1000030

vendor: Name of instrument vendor.

Definition at line 193 of file cv.hpp.

MS_instrument_model = 1000031

instrument model: Instrument model name not including the vendor's name.

Definition at line 196 of file cv.hpp.

Referenced by test().

MS_customization = 1000032

customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.

Definition at line 199 of file cv.hpp.

MS_deisotoping = 1000033

deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.

Definition at line 202 of file cv.hpp.

Referenced by initializeTestData(), test(), testDataProcessing(), testParamContainer(), and testProcessingMethod().

MS_charge_deconvolution = 1000034

charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.

Definition at line 205 of file cv.hpp.

Referenced by initializeTestData(), testDataProcessing(), and testProcessingMethod().

MS_peak_picking = 1000035

peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.

Definition at line 208 of file cv.hpp.

Referenced by initializeTestData(), test(), testDataProcessing(), and testProcessingMethod().

MS_scan_mode_OBSOLETE = 1000036

scan mode: OBSOLETE.

Definition at line 211 of file cv.hpp.

MS_polarity_OBSOLETE = 1000037

polarity: Terms to describe the polarity setting of the instrument.

Definition at line 214 of file cv.hpp.

MS_minute_OBSOLETE = 1000038

minute: Acquisition time in minutes.

Definition at line 217 of file cv.hpp.

MS_second_OBSOLETE = 1000039

second: Acquisition time in seconds.

Definition at line 220 of file cv.hpp.

MS_m_z = 1000040

m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.

Definition at line 223 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS2(), test(), testComponent(), testCompound(), testConfiguration(), testContact(), testCVParam(), testDeisotoping(), testEvidence(), testInstrument(), testIsA(), testMS2Denoising(), testNamedParamContainer(), testOtherRelations(), testParamContainer(), testParamGroup(), testPeptide(), testPrecursor(), testPrecursorMassRemoval(), testPrediction(), testProduct(), testProtein(), testRetentionTime(), testSample(), testScan(), testSourceFile(), testSpectrum(), testValidation(), and testZeroSamplesFilter().

MS_mass_to_charge_ratio = MS_m_z

mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.

Definition at line 226 of file cv.hpp.

MS_Th = MS_m_z

Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.

Definition at line 229 of file cv.hpp.

MS_thomson = MS_m_z

thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.

Definition at line 232 of file cv.hpp.

MS_charge_state = 1000041

charge state: The charge state of the ion, single or multiple and positive or negatively charged.

Definition at line 235 of file cv.hpp.

Referenced by checkSpectrumInfo(), initializeTestData(), initializeTinyMGF(), test(), test_v3(), testDeisotoping(), testMS2Denoising(), testParamContainer(), testPrecursor(), testPrecursorMassRemoval(), testSpectrum(), testZeroSamplesFilter(), verifyPrecursorInfo(), and verifyPrecursorMZ().

z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.

Definition at line 238 of file cv.hpp.

MS_peak_intensity = 1000042

peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.

Definition at line 241 of file cv.hpp.

Referenced by initializeTinyMGF(), test(), testEvidence(), testIDTranslation(), testParamContainer(), testPeptide(), testRetentionTime(), testSample(), testTarget(), testTraData(), testTransition(), and testValidation().

MS_intensity_unit = 1000043

intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.

Definition at line 244 of file cv.hpp.

MS_dissociation_method = 1000044

dissociation method: Fragmentation method used for dissociation or fragmentation.

Definition at line 247 of file cv.hpp.

Referenced by testIsChildOf(), and testParamContainer().

MS_collision_energy = 1000045

collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.

Definition at line 250 of file cv.hpp.

Referenced by initializeTestData(), test(), testPrecursor(), and testSpectrum().

MS_energy_unit_OBSOLETE = 1000046

energy unit: Energy units are represented in either eV or Joules.

Definition at line 253 of file cv.hpp.

MS_emulsion = 1000047

emulsion: State if the sample is in emulsion form.

Definition at line 256 of file cv.hpp.

MS_gaseous_sample_state = 1000048

gaseous sample state: State if the sample is in gaseous form.

Definition at line 259 of file cv.hpp.

MS_liquid_sample_state = 1000049

liquid sample state: State if the sample is in liquid form.

Definition at line 262 of file cv.hpp.

MS_solid_sample_state = 1000050

solid sample state: State if the sample is in solid form.

Definition at line 265 of file cv.hpp.

MS_solution = 1000051

solution: State if the sample is in solution form.

Definition at line 268 of file cv.hpp.

MS_suspension = 1000052

suspension: State if the sample is in suspension form.

Definition at line 271 of file cv.hpp.

MS_sample_batch = 1000053

sample batch: Sample batch lot identifier.

Definition at line 274 of file cv.hpp.

MS_chromatography_OBSOLETE = 1000054

chromatography: Chromatographic conditions used to obtain the sample.

Definition at line 277 of file cv.hpp.

MS_continuous_flow_fast_atom_bombardment = 1000055

continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.

Definition at line 280 of file cv.hpp.

CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.

Definition at line 283 of file cv.hpp.

MS_direct_inlet = 1000056

direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.

Definition at line 286 of file cv.hpp.

MS_electrospray_inlet = 1000057

electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.

Definition at line 289 of file cv.hpp.

MS_flow_injection_analysis = 1000058

flow injection analysis: Sample is directly injected or infused into the ionization source.

Definition at line 292 of file cv.hpp.

MS_inductively_coupled_plasma = 1000059

inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.

Definition at line 295 of file cv.hpp.

MS_infusion = 1000060

infusion: The continuous flow of solution of a sample into the ionization source.

Definition at line 298 of file cv.hpp.

MS_jet_separator = 1000061

jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.

Definition at line 301 of file cv.hpp.

MS_membrane_separator = 1000062

membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.

Definition at line 304 of file cv.hpp.

MS_moving_belt = 1000063

moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules.

Definition at line 307 of file cv.hpp.

MS_moving_wire = 1000064

moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules.

Definition at line 310 of file cv.hpp.

MS_open_split = 1000065

open split: A division of flowing stream of liquid into two streams.

Definition at line 313 of file cv.hpp.

MS_particle_beam = 1000066

particle beam: Method for generating ions from a solution of an analyte.

Definition at line 316 of file cv.hpp.

MS_reservoir = 1000067

reservoir: A sample inlet method involving a reservoir.

Definition at line 319 of file cv.hpp.

MS_septum = 1000068

septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.

Definition at line 322 of file cv.hpp.

Referenced by testSample().

MS_thermospray_inlet = 1000069

thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.

Definition at line 325 of file cv.hpp.

MS_atmospheric_pressure_chemical_ionization = 1000070

atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.

Definition at line 328 of file cv.hpp.

APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.

Definition at line 331 of file cv.hpp.

MS_chemical_ionization = 1000071

chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.

Definition at line 334 of file cv.hpp.

Referenced by testSynonyms().

CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.

Definition at line 337 of file cv.hpp.

MS_Electronic_Ionization_OBSOLETE = 1000072

Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.

Definition at line 340 of file cv.hpp.

EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.

Definition at line 343 of file cv.hpp.

MS_electrospray_ionization = 1000073

electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.

Definition at line 346 of file cv.hpp.

ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.

Definition at line 349 of file cv.hpp.

MS_fast_atom_bombardment_ionization = 1000074

fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.

Definition at line 352 of file cv.hpp.

FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.

Definition at line 355 of file cv.hpp.

MS_matrix_assisted_laser_desorption_ionization = 1000075

matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.

Definition at line 358 of file cv.hpp.

Referenced by test().

MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.

Definition at line 361 of file cv.hpp.

MS_negative_ion_mode_OBSOLETE = 1000076

negative ion mode: OBSOLETE.

Definition at line 364 of file cv.hpp.

MS_positive_ion_mode_OBSOLETE = 1000077

positive ion mode: OBSOLETE.

Definition at line 367 of file cv.hpp.

MS_axial_ejection_linear_ion_trap = 1000078

axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.

Definition at line 370 of file cv.hpp.

MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer = 1000079

fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.

Definition at line 373 of file cv.hpp.

Referenced by testMassAnalyzerFilter(), and testSynonyms().

FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.

Definition at line 376 of file cv.hpp.

Referenced by FTSieve::accept(), anal(), initializeSpectrumList(), test(), testBasic(), testIsA(), and testSynonyms().

MS_magnetic_sector = 1000080

magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.

Definition at line 379 of file cv.hpp.

MS_quadrupole = 1000081

quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.

Definition at line 382 of file cv.hpp.

Referenced by main().

MS_quadrupole_ion_trap = 1000082

quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.

Definition at line 385 of file cv.hpp.

Referenced by initializeTestData(), testComponentList(), and testInstrumentConfiguration().

MS_Paul_Ion_trap = MS_quadrupole_ion_trap

Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.

Definition at line 388 of file cv.hpp.

QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.

Definition at line 391 of file cv.hpp.

Referenced by test(), testMetadata(), and testSynonyms().

MS_Quistor = MS_quadrupole_ion_trap

Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.

Definition at line 394 of file cv.hpp.

MS_radial_ejection_linear_ion_trap = 1000083

radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.

Definition at line 397 of file cv.hpp.

Referenced by createSpectrumList(), and testIsA().

MS_time_of_flight = 1000084

time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.

Definition at line 400 of file cv.hpp.

TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.

Definition at line 403 of file cv.hpp.

MS_baseline = 1000085

baseline: An attribute of resolution when recording the detector response in absence of the analyte.

Definition at line 406 of file cv.hpp.

MS_full_width_at_half_maximum = 1000086

full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.

Definition at line 409 of file cv.hpp.

FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.

Definition at line 412 of file cv.hpp.

MS_ten_percent_valley = 1000087

ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.

Definition at line 415 of file cv.hpp.

MS_constant_OBSOLETE = 1000088

constant: When resolution is constant with respect to m/z.

Definition at line 418 of file cv.hpp.

MS_proportional_OBSOLETE = 1000089

proportional: When resolution is proportional with respect to m/z.

Definition at line 421 of file cv.hpp.

MS_mass_scan_OBSOLETE = 1000090

mass scan: A variation of instrument where a selected mass is scanned.

Definition at line 424 of file cv.hpp.

MS_selected_ion_detection_OBSOLETE = 1000091

selected ion detection: Please see Single Ion Monitoring.

Definition at line 427 of file cv.hpp.

MS_decreasing_m_z_scan = 1000092

decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.

Definition at line 430 of file cv.hpp.

MS_increasing_m_z_scan = 1000093

increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.

Definition at line 433 of file cv.hpp.

MS_exponential = 1000094

exponential: The mass scan is done in exponential mode.

Definition at line 436 of file cv.hpp.

MS_linear_OBSOLETE = 1000095

linear: The mass scan is done in linear mode.

Definition at line 439 of file cv.hpp.

MS_quadratic = 1000096

quadratic: The mass scan is done in quadratic mode.

Definition at line 442 of file cv.hpp.

MS_constant_neutral_mass_loss_OBSOLETE = 1000097

constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.

Definition at line 445 of file cv.hpp.

MS_multiple_ion_monitoring_OBSOLETE = 1000098

multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.

Definition at line 448 of file cv.hpp.

MS_multiple_reaction_monitoring_OBSOLETE = 1000099

multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.

Definition at line 451 of file cv.hpp.

MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.

Definition at line 454 of file cv.hpp.

MS_precursor_ion_scan_OBSOLETE = 1000100

precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.

Definition at line 457 of file cv.hpp.

MS_product_ion_scan_OBSOLETE = 1000101

product ion scan: The specific scan function or process that records product ion spectrum.

Definition at line 460 of file cv.hpp.

MS_single_ion_monitoring_OBSOLETE = 1000102

single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.

Definition at line 463 of file cv.hpp.

MS_single_reaction_monitoring_OBSOLETE = 1000103

single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.

Definition at line 466 of file cv.hpp.

MS_None____OBSOLETE = 1000104

None ??: None.

Definition at line 469 of file cv.hpp.

Referenced by test().

MS_reflectron_off = 1000105

reflectron off: Reflectron is off.

Definition at line 472 of file cv.hpp.

Referenced by testInstrumentConfiguration(), testParamContainer(), testPrecursor(), and testScanList().

MS_reflectron_on = 1000106

reflectron on: Reflectron is on.

Definition at line 475 of file cv.hpp.

Referenced by testMSData(), testParamContainer(), testPrecursor(), testScanList(), and testSpectrum().

MS_channeltron = 1000107

channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.

Definition at line 478 of file cv.hpp.

MS_Channeltron_Detector = MS_channeltron

Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.

Definition at line 481 of file cv.hpp.

MS_conversion_dynode_electron_multiplier = 1000108

conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.

Definition at line 484 of file cv.hpp.

MS_conversion_dynode_photomultiplier = 1000109

conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.

Definition at line 487 of file cv.hpp.

MS_daly_detector = 1000110

daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.

Definition at line 490 of file cv.hpp.

MS_Daly = MS_daly_detector

Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.

Definition at line 493 of file cv.hpp.

MS_electron_multiplier_tube = 1000111

electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.

Definition at line 496 of file cv.hpp.

EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.

Definition at line 499 of file cv.hpp.

MS_faraday_cup = 1000112

faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.

Definition at line 502 of file cv.hpp.

MS_focal_plane_array = 1000113

focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.

Definition at line 505 of file cv.hpp.

MS_microchannel_plate_detector = 1000114

microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.

Definition at line 508 of file cv.hpp.

MS_multichannel_plate = MS_microchannel_plate_detector

multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.

Definition at line 511 of file cv.hpp.

MS_multi_collector = 1000115

multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.

Definition at line 514 of file cv.hpp.

MS_photomultiplier = 1000116

photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.

Definition at line 517 of file cv.hpp.

PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.

Definition at line 520 of file cv.hpp.

MS_analog_digital_converter = 1000117

analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.

Definition at line 523 of file cv.hpp.

ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.

Definition at line 526 of file cv.hpp.

MS_pulse_counting = 1000118

pulse counting: Definition to do.

Definition at line 529 of file cv.hpp.

MS_time_digital_converter = 1000119

time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.

Definition at line 532 of file cv.hpp.

TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.

Definition at line 535 of file cv.hpp.

MS_transient_recorder = 1000120

transient recorder: A detector acquisition mode used for detecting transient signals.

Definition at line 538 of file cv.hpp.

MS_SCIEX_instrument_model = 1000121

SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as "Applied Biosystems|MDS SCIEX".

Definition at line 541 of file cv.hpp.

MS_Bruker_Daltonics_instrument_model = 1000122

Bruker Daltonics instrument model: Bruker Daltonics' instrument model.

Definition at line 544 of file cv.hpp.

MS_IonSpec_instrument_model = 1000123

IonSpec instrument model: IonSpec corporation instrument model.

Definition at line 547 of file cv.hpp.

MS_Shimadzu_instrument_model = 1000124

Shimadzu instrument model: Shimadzu corporation instrument model.

Definition at line 550 of file cv.hpp.

MS_Thermo_Finnigan_instrument_model = 1000125

Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.

Definition at line 553 of file cv.hpp.

MS_Waters_instrument_model = 1000126

Waters instrument model: Waters Corporation instrument model.

Definition at line 556 of file cv.hpp.

MS_centroid_spectrum = 1000127

centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.

Definition at line 559 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), and test().

MS_Discrete_Mass_Spectrum = MS_centroid_spectrum

Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.

Definition at line 562 of file cv.hpp.

MS_profile_spectrum = 1000128

profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.

Definition at line 565 of file cv.hpp.

Referenced by test().

MS_continuous_mass_spectrum = MS_profile_spectrum

continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.

Definition at line 568 of file cv.hpp.

MS_Continuum_Mass_Spectrum = MS_profile_spectrum

Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.

Definition at line 571 of file cv.hpp.

MS_negative_scan = 1000129

negative scan: Polarity of the scan is negative.

Definition at line 574 of file cv.hpp.

Referenced by initializeTinyMGF(), and pwiz::msdata::ChromatogramListBase::polarityStringForFilter().

MS_positive_scan = 1000130

positive scan: Polarity of the scan is positive.

Definition at line 577 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), and test().

MS_number_of_detector_counts = 1000131
MS_percent_of_base_peak = 1000132

percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.

Definition at line 583 of file cv.hpp.

MS_collision_induced_dissociation = 1000133

collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.

Definition at line 586 of file cv.hpp.

Referenced by createSpectrumList(), initializeTestData(), testIs(), testIsChildOf(), testMS2Activation(), testPrecursor(), and testSpectrum().

CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.

Definition at line 589 of file cv.hpp.

Referenced by test(), and testParamContainer().

CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.

Definition at line 592 of file cv.hpp.

MS_collisionally_activated_dissociation = MS_collision_induced_dissociation

collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.

Definition at line 595 of file cv.hpp.

MS_plasma_desorption = 1000134

plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.

Definition at line 598 of file cv.hpp.

Referenced by testIs(), and testIsChildOf().

PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.

Definition at line 601 of file cv.hpp.

MS_post_source_decay = 1000135

post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.

Definition at line 604 of file cv.hpp.

PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.

Definition at line 607 of file cv.hpp.

MS_surface_induced_dissociation = 1000136

surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.

Definition at line 610 of file cv.hpp.

SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.

Definition at line 613 of file cv.hpp.

MS_electron_volt_OBSOLETE = 1000137

electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.

Definition at line 616 of file cv.hpp.

MS_eV_OBSOLETE = MS_electron_volt_OBSOLETE

eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.

Definition at line 619 of file cv.hpp.

MS_normalized_collision_energy = 1000138

normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions.

Definition at line 622 of file cv.hpp.

MS_4000_QTRAP = 1000139

4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.

Definition at line 625 of file cv.hpp.

MS_4700_Proteomics_Analyzer = 1000140

4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.

Definition at line 628 of file cv.hpp.

MS_apex_IV = 1000141

apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.

Definition at line 631 of file cv.hpp.

MS_apex_Q = 1000142

apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.

Definition at line 634 of file cv.hpp.

MS_API_150EX = 1000143

API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.

Definition at line 637 of file cv.hpp.

MS_API_150EX_Prep = 1000144

API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.

Definition at line 640 of file cv.hpp.

MS_API_2000 = 1000145

API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.

Definition at line 643 of file cv.hpp.

MS_API_3000 = 1000146

API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.

Definition at line 646 of file cv.hpp.

MS_API_4000 = 1000147

API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.

Definition at line 649 of file cv.hpp.

MS_autoflex_II = 1000148

autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.

Definition at line 652 of file cv.hpp.

MS_autoflex_TOF_TOF = 1000149

autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.

Definition at line 655 of file cv.hpp.

MS_Auto_Spec_Ultima_NT = 1000150

Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.

Definition at line 658 of file cv.hpp.

MS_BioTOF_II = 1000151

BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.

Definition at line 661 of file cv.hpp.

MS_BioTOF_Q = 1000152

BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.

Definition at line 664 of file cv.hpp.

MS_DELTA_plusAdvantage = 1000153

DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.

Definition at line 667 of file cv.hpp.

MS_DELTAplusXP = 1000154

DELTAplusXP: ThermoFinnigan DELTAplusXP MS.

Definition at line 670 of file cv.hpp.

MS_ELEMENT2_OBSOLETE = 1000155

ELEMENT2: ThermoFinnigan ELEMENT2 MS.

Definition at line 673 of file cv.hpp.

MS_esquire_4000 = 1000156

esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.

Definition at line 676 of file cv.hpp.

MS_esquire_6000 = 1000157

esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.

Definition at line 679 of file cv.hpp.

MS_explorer = 1000158

explorer: IonSpec Explorer MS.

Definition at line 682 of file cv.hpp.

MS_GCT = 1000159

GCT: Waters oa-ToF based GCT.

Definition at line 685 of file cv.hpp.

MS_HCT = 1000160

HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.

Definition at line 688 of file cv.hpp.

MS_HCTplus = 1000161

HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.

Definition at line 691 of file cv.hpp.

MS_HiRes_ESI = 1000162

HiRes ESI: IonSpec HiResESI MS.

Definition at line 694 of file cv.hpp.

MS_HiRes_MALDI = 1000163

HiRes MALDI: IonSpec HiResMALDI MS.

Definition at line 697 of file cv.hpp.

MS_IsoPrime = 1000164

IsoPrime: Waters IsoPrime MS.

Definition at line 700 of file cv.hpp.

MS_IsoProbe = 1000165

IsoProbe: Waters IsoProbe MS.

Definition at line 703 of file cv.hpp.

MS_IsoProbe_T = 1000166

IsoProbe T: Waters IsoProbe T MS.

Definition at line 706 of file cv.hpp.

MS_LCQ_Advantage = 1000167

LCQ Advantage: ThermoFinnigan LCQ Advantage MS.

Definition at line 709 of file cv.hpp.

MS_LCQ_Classic = 1000168

LCQ Classic: ThermoFinnigan LCQ Classic MS.

Definition at line 712 of file cv.hpp.

MS_LCQ_Deca_XP_Plus = 1000169

LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.

Definition at line 715 of file cv.hpp.

MS_M_LDI_L = 1000170

M L: Waters oa-ToF based MALDI L.

Definition at line 718 of file cv.hpp.

MS_M_LDI_LR = 1000171

M LR: Waters oa-ToF based MALDI LR.

Definition at line 721 of file cv.hpp.

MS_MAT253 = 1000172

MAT253: ThermoFinnigan MAT253 MS.

Definition at line 724 of file cv.hpp.

MS_MAT900XP = 1000173

MAT900XP: ThermoFinnigan MAT900XP MS.

Definition at line 727 of file cv.hpp.

MS_MAT900XP_Trap = 1000174

MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.

Definition at line 730 of file cv.hpp.

MS_MAT95XP = 1000175

MAT95XP: ThermoFinnigan MAT95XP MS.

Definition at line 733 of file cv.hpp.

MS_MAT95XP_Trap = 1000176

MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.

Definition at line 736 of file cv.hpp.

MS_microflex = 1000177

microflex: Bruker Daltonics' microflex: MALDI TOF.

Definition at line 739 of file cv.hpp.

MS_microTOF_LC = 1000178

microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.

Definition at line 742 of file cv.hpp.

MS_neptune = 1000179

neptune: ThermoFinnigan NEPTUNE MS.

Definition at line 745 of file cv.hpp.

MS_NG_5400 = 1000180

NG-5400: Waters NG-5400 MS.

Definition at line 748 of file cv.hpp.

MS_OMEGA = 1000181

OMEGA: IonSpec OMEGA MS.

Definition at line 751 of file cv.hpp.

MS_OMEGA_2001 = 1000182

OMEGA-2001: IonSpec OMEGA-2001 MS.

Definition at line 754 of file cv.hpp.

MS_OmniFlex = 1000183

OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.

Definition at line 757 of file cv.hpp.

MS_Platform_ICP = 1000184

Platform ICP: Waters Platform ICP MS.

Definition at line 760 of file cv.hpp.

MS_PolarisQ = 1000185

PolarisQ: ThermoFinnigan PolarisQ MS.

Definition at line 763 of file cv.hpp.

MS_proteomics_solution_1 = 1000186

proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.

Definition at line 766 of file cv.hpp.

MS_Q_TRAP = 1000187

Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.

Definition at line 769 of file cv.hpp.

MS_Q_Tof_micro = 1000188

Q-Tof micro: Waters oa-ToF based Q-Tof micro.

Definition at line 772 of file cv.hpp.

MS_Q_Tof_ultima = 1000189

Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima.

Definition at line 775 of file cv.hpp.

MS_QSTAR = 1000190

QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.

Definition at line 778 of file cv.hpp.

MS_quattro_micro = 1000191

quattro micro: Waters oa-ToF based micro.

Definition at line 781 of file cv.hpp.

MS_Quattro_UItima = 1000192

Quattro UItima: Waters oa-ToF based Ultima.

Definition at line 784 of file cv.hpp.

MS_Surveyor_MSQ = 1000193

Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.

Definition at line 787 of file cv.hpp.

MS_SymBiot_I = 1000194

SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.

Definition at line 790 of file cv.hpp.

MS_SymBiot_XVI = 1000195

SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.

Definition at line 793 of file cv.hpp.

MS_TEMPUS_TOF = 1000196

TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.

Definition at line 796 of file cv.hpp.

MS_TRACE_DSQ = 1000197

TRACE DSQ: ThermoFinnigan TRACE DSQ MS.

Definition at line 799 of file cv.hpp.

MS_TRITON = 1000198

TRITON: ThermoFinnigan TRITON MS.

Definition at line 802 of file cv.hpp.

MS_TSQ_Quantum = 1000199

TSQ Quantum: ThermoFinnigan TSQ Quantum MS.

Definition at line 805 of file cv.hpp.

MS_ultima = 1000200

ultima: IonSpec Ultima MS.

Definition at line 808 of file cv.hpp.

MS_ultraflex = 1000201

ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.

Definition at line 811 of file cv.hpp.

MS_ultraflex_TOF_TOF = 1000202

ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.

Definition at line 814 of file cv.hpp.

MS_Voyager_DE_PRO = 1000203

Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.

Definition at line 817 of file cv.hpp.

MS_Voyager_DE_STR = 1000204

Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.

Definition at line 820 of file cv.hpp.

MS_selected_ion_monitoring = 1000205

selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.

Definition at line 823 of file cv.hpp.

MS_Multiple_Ion_Monitoring = MS_selected_ion_monitoring

Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.

Definition at line 826 of file cv.hpp.

SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.

Definition at line 829 of file cv.hpp.

MS_selected_reaction_monitoring = 1000206

selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.

Definition at line 832 of file cv.hpp.

SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.

Definition at line 835 of file cv.hpp.

MS_accurate_mass_OBSOLETE = 1000207

accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.

Definition at line 838 of file cv.hpp.

Referenced by test_v3().

MS_average_mass_OBSOLETE = 1000208

average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.

Definition at line 841 of file cv.hpp.

MS_appearance_energy_OBSOLETE = 1000209

appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.

Definition at line 844 of file cv.hpp.

AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.

Definition at line 847 of file cv.hpp.

MS_base_peak = 1000210

base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.

Definition at line 850 of file cv.hpp.

MS_BP = MS_base_peak

BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.

Definition at line 853 of file cv.hpp.

MS_OBSOLETE_charge_number_OBSOLETE = 1000211

OBSOLETE charge number: The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.

Definition at line 856 of file cv.hpp.

z (OBSOLETE charge number): The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.

Definition at line 859 of file cv.hpp.

MS_dalton_OBSOLETE = 1000212

dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.

Definition at line 862 of file cv.hpp.

MS_Da_OBSOLETE = MS_dalton_OBSOLETE

Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.

Definition at line 865 of file cv.hpp.

MS_electron_affinity_OBSOLETE = 1000213

electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.

Definition at line 868 of file cv.hpp.

EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.

Definition at line 871 of file cv.hpp.

MS_electron_energy_obsolete_OBSOLETE = 1000214

electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.

Definition at line 874 of file cv.hpp.

MS_exact_mass_OBSOLETE = 1000215

exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.

Definition at line 877 of file cv.hpp.

MS_field_free_region = 1000216

field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.

Definition at line 880 of file cv.hpp.

FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.

Definition at line 883 of file cv.hpp.

MS_ionization_cross_section_OBSOLETE = 1000217

ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.

Definition at line 886 of file cv.hpp.

MS_ionization_efficiency_OBSOLETE = 1000218

ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.

Definition at line 889 of file cv.hpp.

MS_ionization_energy_OBSOLETE = 1000219

ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.

Definition at line 892 of file cv.hpp.

IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.

Definition at line 895 of file cv.hpp.

MS_isotope_dilution_mass_spectrometry_OBSOLETE = 1000220

isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.

Definition at line 898 of file cv.hpp.

IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.

Definition at line 901 of file cv.hpp.

MS_magnetic_deflection = 1000221

magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.

Definition at line 904 of file cv.hpp.

MS_mass_defect_OBSOLETE = 1000222

mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.

Definition at line 907 of file cv.hpp.

MS_mass_number_OBSOLETE = 1000223

mass number: The sum of the protons and neutrons in an atom, molecule or ion.

Definition at line 910 of file cv.hpp.

MS_molecular_mass_OBSOLETE = 1000224

molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).

Definition at line 913 of file cv.hpp.

MS_monoisotopic_mass_OBSOLETE = 1000225

monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.

Definition at line 916 of file cv.hpp.

MS_molecular_beam_mass_spectrometry_OBSOLETE = 1000226

molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.

Definition at line 919 of file cv.hpp.

MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.

Definition at line 922 of file cv.hpp.

MS_multiphoton_ionization = 1000227

multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.

Definition at line 925 of file cv.hpp.

MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.

Definition at line 928 of file cv.hpp.

MS_nitrogen_rule_OBSOLETE = 1000228

nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.

Definition at line 931 of file cv.hpp.

MS_nominal_mass_OBSOLETE = 1000229

nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.

Definition at line 934 of file cv.hpp.

MS_odd_electron_rule_OBSOLETE = 1000230

odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.

Definition at line 937 of file cv.hpp.

MS_peak = 1000231

peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.

Definition at line 940 of file cv.hpp.

MS_peak_intensity_OBSOLETE = 1000232

peak intensity: The height or area of a peak in a mass spectrum.

Definition at line 943 of file cv.hpp.

MS_proton_affinity_OBSOLETE = 1000233

proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.

Definition at line 946 of file cv.hpp.

MS_PA_OBSOLETE = MS_proton_affinity_OBSOLETE

PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.

Definition at line 949 of file cv.hpp.

MS_mass_resolving_power_OBSOLETE = 1000234

mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.

Definition at line 952 of file cv.hpp.

MS_total_ion_current_chromatogram = 1000235

total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.

Definition at line 955 of file cv.hpp.

Referenced by initializeTestData(), and testChromatogram().

MS_TIC_chromatogram = MS_total_ion_current_chromatogram

TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.

Definition at line 958 of file cv.hpp.

MS_transmission = 1000236

transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.

Definition at line 961 of file cv.hpp.

MS_unified_atomic_mass_unit_OBSOLETE = 1000237

unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.

Definition at line 964 of file cv.hpp.

u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.

Definition at line 967 of file cv.hpp.

MS_accelerator_mass_spectrometry_OBSOLETE = 1000238

accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.

Definition at line 970 of file cv.hpp.

AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.

Definition at line 973 of file cv.hpp.

MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization = 1000239

atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.

Definition at line 976 of file cv.hpp.

AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.

Definition at line 979 of file cv.hpp.

MS_atmospheric_pressure_ionization = 1000240

atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.

Definition at line 982 of file cv.hpp.

API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.

Definition at line 985 of file cv.hpp.

MS_Atmostpheric_Pressure_Photoionization_OBSOLETE = 1000241

Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.

Definition at line 988 of file cv.hpp.

APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.

Definition at line 991 of file cv.hpp.

MS_blackbody_infrared_radiative_dissociation = 1000242

blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.

Definition at line 994 of file cv.hpp.

BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.

Definition at line 997 of file cv.hpp.

MS_charge_remote_fragmentation_OBSOLETE = 1000243

charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.

Definition at line 1000 of file cv.hpp.

CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.

Definition at line 1003 of file cv.hpp.

MS_consecutive_reaction_monitoring_OBSOLETE_1000244 = 1000244

consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.

Definition at line 1006 of file cv.hpp.

CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.

Definition at line 1009 of file cv.hpp.

MS_charge_stripping = 1000245

charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.

Definition at line 1012 of file cv.hpp.

CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.

Definition at line 1015 of file cv.hpp.

MS_delayed_extraction = 1000246

delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.

Definition at line 1018 of file cv.hpp.

DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.

Definition at line 1021 of file cv.hpp.

MS_desorption_ionization = 1000247

desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.

Definition at line 1024 of file cv.hpp.

DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.

Definition at line 1027 of file cv.hpp.

MS_direct_insertion_probe = 1000248

direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.

Definition at line 1030 of file cv.hpp.

DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.

Definition at line 1033 of file cv.hpp.

MS_direct_liquid_introduction = 1000249

direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.

Definition at line 1036 of file cv.hpp.

DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.

Definition at line 1039 of file cv.hpp.

MS_electron_capture_dissociation = 1000250

electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.

Definition at line 1042 of file cv.hpp.

ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.

Definition at line 1045 of file cv.hpp.

MS_even_electron_ion_OBSOLETE = 1000251

even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.

Definition at line 1048 of file cv.hpp.

EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.

Definition at line 1051 of file cv.hpp.

MS_electron_induced_excitation_in_organics_OBSOLETE = 1000252

electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.

Definition at line 1054 of file cv.hpp.

EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.

Definition at line 1057 of file cv.hpp.

MS_electron_multiplier = 1000253

electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.

Definition at line 1060 of file cv.hpp.

Referenced by initializeTestData(), main(), testComponentList(), and testInstrumentConfiguration().

EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.

Definition at line 1063 of file cv.hpp.

MS_electrostatic_energy_analyzer = 1000254

electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.

Definition at line 1066 of file cv.hpp.

ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.

Definition at line 1069 of file cv.hpp.

MS_flowing_afterglow = 1000255

flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.

Definition at line 1072 of file cv.hpp.

FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.

Definition at line 1075 of file cv.hpp.

MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE = 1000256

high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.

Definition at line 1078 of file cv.hpp.

FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.

Definition at line 1081 of file cv.hpp.

MS_field_desorption = 1000257

field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.

Definition at line 1084 of file cv.hpp.

FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.

Definition at line 1087 of file cv.hpp.

MS_field_ionization = 1000258

field ionization: The removal of electrons from any species by interaction with a high electric field.

Definition at line 1090 of file cv.hpp.

FI (field ionization): The removal of electrons from any species by interaction with a high electric field.

Definition at line 1093 of file cv.hpp.

MS_glow_discharge_ionization = 1000259

glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.

Definition at line 1096 of file cv.hpp.

GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.

Definition at line 1099 of file cv.hpp.

MS_ion_kinetic_energy_spectrometry_OBSOLETE = 1000260

ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.

Definition at line 1102 of file cv.hpp.

IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.

Definition at line 1105 of file cv.hpp.

MS_ion_mobility_spectrometry_OBSOLETE = 1000261

ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.

Definition at line 1108 of file cv.hpp.

IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.

Definition at line 1111 of file cv.hpp.

MS_infrared_multiphoton_dissociation = 1000262

infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.

Definition at line 1114 of file cv.hpp.

IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.

Definition at line 1117 of file cv.hpp.

Referenced by createSpectrumList(), and testMS2Activation().

MS_isotope_ratio_mass_spectrometry_OBSOLETE = 1000263

isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.

Definition at line 1120 of file cv.hpp.

IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.

Definition at line 1123 of file cv.hpp.

MS_ion_trap = 1000264

ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.

Definition at line 1126 of file cv.hpp.

Referenced by anal(), initializeSpectrumList(), test(), testBasic(), testCleavageAgents(), testIsA(), and testMassAnalyzerFilter().

MS_IT = MS_ion_trap

IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.

Definition at line 1129 of file cv.hpp.

MS_kinetic_energy_release_distribution_OBSOLETE = 1000265

kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.

Definition at line 1132 of file cv.hpp.

KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.

Definition at line 1135 of file cv.hpp.

MS_Laser_Desorption_OBSOLETE = 1000266

Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.

Definition at line 1138 of file cv.hpp.

MS_Laser_Ionization_MERGE_OBSOLETE = MS_Laser_Desorption_OBSOLETE

Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.

Definition at line 1141 of file cv.hpp.

MS_LD_OBSOLETE = MS_Laser_Desorption_OBSOLETE

LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.

Definition at line 1144 of file cv.hpp.

MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE = 1000267

mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.

Definition at line 1147 of file cv.hpp.

MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.

Definition at line 1150 of file cv.hpp.

MS_mass_spectrometry_OBSOLETE = 1000268

mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.

Definition at line 1153 of file cv.hpp.

MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.

Definition at line 1156 of file cv.hpp.

MS_mass_spectrometry_mass_spectrometry_OBSOLETE = 1000269

mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.

Definition at line 1159 of file cv.hpp.

MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.

Definition at line 1162 of file cv.hpp.

MS_multiple_stage_mass_spectrometry_OBSOLETE = 1000270

multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.

Definition at line 1165 of file cv.hpp.

MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.

Definition at line 1168 of file cv.hpp.

MS_Negative_Ion_chemical_ionization = 1000271

Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.

Definition at line 1171 of file cv.hpp.

NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.

Definition at line 1174 of file cv.hpp.

MS_neutralization_reionization_mass_spectrometry = 1000272

neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.

Definition at line 1177 of file cv.hpp.

NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.

Definition at line 1180 of file cv.hpp.

MS_photoionization = 1000273

photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.

Definition at line 1183 of file cv.hpp.

PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.

Definition at line 1186 of file cv.hpp.

MS_pyrolysis_mass_spectrometry = 1000274

pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.

Definition at line 1189 of file cv.hpp.

PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.

Definition at line 1192 of file cv.hpp.

MS_collision_quadrupole = 1000275

collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.

Definition at line 1195 of file cv.hpp.

q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.

Definition at line 1198 of file cv.hpp.

MS_resonance_enhanced_multiphoton_ionization = 1000276

resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.

Definition at line 1201 of file cv.hpp.

REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.

Definition at line 1204 of file cv.hpp.

MS_residual_gas_analyzer_OBSOLETE = 1000277

residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.

Definition at line 1207 of file cv.hpp.

RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.

Definition at line 1210 of file cv.hpp.

MS_surface_enhanced_laser_desorption_ionization = 1000278

surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.

Definition at line 1213 of file cv.hpp.

SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.

Definition at line 1216 of file cv.hpp.

MS_surface_enhanced_neat_desorption = 1000279

surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.

Definition at line 1219 of file cv.hpp.

SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.

Definition at line 1222 of file cv.hpp.

MS_suface_ionization_OBSOLETE = 1000280

suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.

Definition at line 1225 of file cv.hpp.

SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.

Definition at line 1228 of file cv.hpp.

MS_selected_ion_flow_tube = 1000281

selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.

Definition at line 1231 of file cv.hpp.

SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.

Definition at line 1234 of file cv.hpp.

MS_sustained_off_resonance_irradiation = 1000282

sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.

Definition at line 1237 of file cv.hpp.

SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.

Definition at line 1240 of file cv.hpp.

MS_Spark_Source_Mass_Spectrometry_OBSOLETE = 1000283

Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.

Definition at line 1243 of file cv.hpp.

SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.

Definition at line 1246 of file cv.hpp.

MS_stored_waveform_inverse_fourier_transform = 1000284

stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.

Definition at line 1249 of file cv.hpp.

SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.

Definition at line 1252 of file cv.hpp.

MS_total_ion_current = 1000285

total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.

Definition at line 1255 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), and test_v3().

TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.

Definition at line 1258 of file cv.hpp.

Referenced by test(), and testIdentifiableParamContainer().

MS_time_lag_focusing = 1000286

time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.

Definition at line 1261 of file cv.hpp.

TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.

Definition at line 1264 of file cv.hpp.

MS_time_of_flight_mass_spectrometer_OBSOLETE = 1000287

time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.

Definition at line 1267 of file cv.hpp.

TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.

Definition at line 1270 of file cv.hpp.

MS_cyclotron = 1000288

cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.

Definition at line 1273 of file cv.hpp.

MS_double_focusing_mass_spectrometer_OBSOLETE = 1000289

double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.

Definition at line 1276 of file cv.hpp.

MS_hybrid_mass_spectrometer_OBSOLETE = 1000290

hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.

Definition at line 1279 of file cv.hpp.

MS_linear_ion_trap = 1000291

linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.

Definition at line 1282 of file cv.hpp.

Referenced by testIsA().

MS_mass_spectrograph_obsolete_OBSOLETE = 1000292

mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.

Definition at line 1285 of file cv.hpp.

MS_mass_spectrometer_OBSOLETE = 1000293

mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.

Definition at line 1288 of file cv.hpp.

MS_mass_spectrum = 1000294

mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).

Definition at line 1291 of file cv.hpp.

Referenced by EvenMS2Predicate::accept().

MS_mattauch_herzog_geometry_OBSOLETE = 1000295

mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.

Definition at line 1294 of file cv.hpp.

MS_nier_johnson_geometry_OBSOLETE = 1000296

nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.

Definition at line 1297 of file cv.hpp.

MS_paul_ion_trap_OBSOLETE = 1000297

paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.

Definition at line 1300 of file cv.hpp.

MS_prolate_traochoidal_mass_spectrometer_OBSOLETE = 1000298

prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.

Definition at line 1303 of file cv.hpp.

MS_quistor_OBSOLETE = 1000299

quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.

Definition at line 1306 of file cv.hpp.

MS_reflectron = 1000300

reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.

Definition at line 1309 of file cv.hpp.

MS_sector_mass_spectrometer_OBSOLETE = 1000301

sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.

Definition at line 1312 of file cv.hpp.

MS_tandem_mass_spectrometer_OBSOLETE = 1000302

tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.

Definition at line 1315 of file cv.hpp.

MS_transmission_quadrupole_mass_spectrometer_OBSOLETE = 1000303

transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.

Definition at line 1318 of file cv.hpp.

MS_accelerating_voltage = 1000304

accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.

Definition at line 1321 of file cv.hpp.

MS_cyclotron_motion_OBSOLETE = 1000305

cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.

Definition at line 1324 of file cv.hpp.

MS_dynamic_mass_spectrometry_OBSOLETE = 1000306

dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.

Definition at line 1327 of file cv.hpp.

MS_einzel_lens = 1000307

einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.

Definition at line 1330 of file cv.hpp.

MS_electric_field_strength = 1000308

electric field strength: The magnitude of the force per unit charge at a given point in space.

Definition at line 1333 of file cv.hpp.

MS_first_stability_region = 1000309

first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.

Definition at line 1336 of file cv.hpp.

MS_fringing_field = 1000310

fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.

Definition at line 1339 of file cv.hpp.

MS_kinetic_energy_analyzer = 1000311

kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.

Definition at line 1342 of file cv.hpp.

MS_mass_limit_OBSOLETE = 1000312

mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.

Definition at line 1345 of file cv.hpp.

MS_scan_m_z_range__OBSOLETE = 1000313

scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.

Definition at line 1348 of file cv.hpp.

MS_mass_selective_axial_ejection_OBSOLETE = 1000314

mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.

Definition at line 1351 of file cv.hpp.

MS_mass_selective_instability_OBSOLETE = 1000315

mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.

Definition at line 1354 of file cv.hpp.

MS_mathieu_stability_diagram_OBSOLETE = 1000316

mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.

Definition at line 1357 of file cv.hpp.

MS_orthogonal_extraction_OBSOLETE = 1000317

orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.

Definition at line 1360 of file cv.hpp.

MS_resonance_ion_ejection_OBSOLETE = 1000318

resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.

Definition at line 1363 of file cv.hpp.

MS_space_charge_effect = 1000319

space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.

Definition at line 1366 of file cv.hpp.

MS_static_field = 1000320

static field: An electric or magnetic field that does not change in time.

Definition at line 1369 of file cv.hpp.

MS_2E_Mass_Spectrum_OBSOLETE = 1000321

2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.

Definition at line 1372 of file cv.hpp.

MS_charge_inversion_mass_spectrum = 1000322

charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.

Definition at line 1375 of file cv.hpp.

MS_constant_neutral_loss_scan_OBSOLETE = 1000323

constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.

Definition at line 1378 of file cv.hpp.

MS_constant_neutral_gain_scan_OBSOLETE = 1000324

constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.

Definition at line 1381 of file cv.hpp.

MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE = MS_constant_neutral_gain_scan_OBSOLETE

Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.

Definition at line 1384 of file cv.hpp.

MS_constant_neutral_gain_spectrum = 1000325

constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.

Definition at line 1387 of file cv.hpp.

MS_constant_neutral_mass_gain_spectrum = MS_constant_neutral_gain_spectrum

constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.

Definition at line 1390 of file cv.hpp.

MS_constant_neutral_loss_spectrum = 1000326

constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.

Definition at line 1393 of file cv.hpp.

MS_constant_neutral_mass_loss_spectrum = MS_constant_neutral_loss_spectrum

constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.

Definition at line 1396 of file cv.hpp.

MS_consecutive_reaction_monitoring_OBSOLETE_1000327 = 1000327

consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.

Definition at line 1399 of file cv.hpp.

MS_e_2_mass_spectrum = 1000328

e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.

Definition at line 1402 of file cv.hpp.

MS_linked_scan_OBSOLETE = 1000329

linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.

Definition at line 1405 of file cv.hpp.

MS_linked_scan_at_constant_b_e_OBSOLETE = 1000330

linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.

Definition at line 1408 of file cv.hpp.

MS_Linked_Scan_at_Constant_E2_V_OBSOLETE = 1000331

Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.

Definition at line 1411 of file cv.hpp.

MS_Linked_Scan_at_Constant_B2_E_OBSOLETE = 1000332

Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.

Definition at line 1414 of file cv.hpp.

MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE = 1000333

Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.

Definition at line 1417 of file cv.hpp.

MS_MS_MS_in_Time_OBSOLETE = 1000334

MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.

Definition at line 1420 of file cv.hpp.

MS_MS_MS_in_Space_OBSOLETE = 1000335

MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.

Definition at line 1423 of file cv.hpp.

MS_neutral_loss = 1000336

neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type).

Definition at line 1426 of file cv.hpp.

MS_nth_generation_product_ion_OBSOLETE = 1000337

nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.

Definition at line 1429 of file cv.hpp.

MS_nth_generation_product_ion_scan_OBSOLETE = 1000338

nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.

Definition at line 1432 of file cv.hpp.

MS_nth_generation_product_ion_spectrum_OBSOLETE = 1000339

nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.

Definition at line 1435 of file cv.hpp.

MS_precursor_ion_OBSOLETE = 1000340

precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated.

Definition at line 1438 of file cv.hpp.

MS_precursor_ion_spectrum = 1000341

precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.

Definition at line 1441 of file cv.hpp.

MS_product_ion_OBSOLETE = 1000342

product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.

Definition at line 1444 of file cv.hpp.

MS_product_ion_spectrum_OBSOLETE = 1000343

product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.

Definition at line 1447 of file cv.hpp.

MS_progeny_ion_OBSOLETE = 1000344

progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.

Definition at line 1450 of file cv.hpp.

MS_Progeny_Fragment_Ion_OBSOLETE = MS_progeny_ion_OBSOLETE

Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.

Definition at line 1453 of file cv.hpp.

MS_array_detector = 1000345

array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.

Definition at line 1456 of file cv.hpp.

MS_conversion_dynode = 1000346

conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.

Definition at line 1459 of file cv.hpp.

MS_dynode = 1000347

dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.

Definition at line 1462 of file cv.hpp.

MS_focal_plane_collector = 1000348

focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.

Definition at line 1465 of file cv.hpp.

MS_ion_to_photon_detector = 1000349

ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.

Definition at line 1468 of file cv.hpp.

MS_point_collector = 1000350

point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.

Definition at line 1471 of file cv.hpp.

MS_postacceleration_detector = 1000351

postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.

Definition at line 1474 of file cv.hpp.

MS_secondary_electron_OBSOLETE = 1000352

secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.

Definition at line 1477 of file cv.hpp.

MS_adduct_ion_OBSOLETE = 1000353

adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.

Definition at line 1480 of file cv.hpp.

MS_aromatic_ion_OBSOLETE = 1000354

aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.

Definition at line 1483 of file cv.hpp.

MS_analog_ion_OBSOLETE = 1000355

analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.

Definition at line 1486 of file cv.hpp.

MS_anti_aromatic_ion_OBSOLETE = 1000356

anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.

Definition at line 1489 of file cv.hpp.

MS_cationized_molecule_OBSOLETE = 1000357

cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.

Definition at line 1492 of file cv.hpp.

MS_cluster_ion_OBSOLETE = 1000358

cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.

Definition at line 1495 of file cv.hpp.

MS_Conventional_ion_OBSOLETE = 1000359

Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.

Definition at line 1498 of file cv.hpp.

MS_diagnostic_ion_OBSOLETE = 1000360

diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.

Definition at line 1501 of file cv.hpp.

MS_dimeric_ion_OBSOLETE = 1000361

dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.

Definition at line 1504 of file cv.hpp.

MS_distonic_ion_OBSOLETE = 1000362

distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.

Definition at line 1507 of file cv.hpp.

MS_enium_ion_OBSOLETE = 1000363

enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.

Definition at line 1510 of file cv.hpp.

MS_fragment_ion_OBSOLETE = 1000364

fragment ion: A product ion that results from the dissociation of a precursor ion.

Definition at line 1513 of file cv.hpp.

MS_ion__OBSOLETE = 1000365

ion?: An atomic or molecular species having a net positive or negative electric charge.

Definition at line 1516 of file cv.hpp.

MS_Isotopologue_ion_OBSOLETE = 1000366

Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.

Definition at line 1519 of file cv.hpp.

MS_Isotopomeric_ion_OBSOLETE = 1000367

Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.

Definition at line 1522 of file cv.hpp.

MS_metastable_ion_OBSOLETE = 1000368

metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.

Definition at line 1525 of file cv.hpp.

MS_molecular_ion_OBSOLETE = 1000369

molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.

Definition at line 1528 of file cv.hpp.

MS_negative_ion_OBSOLETE = 1000370

negative ion: An atomic or molecular species having a net negative electric charge.

Definition at line 1531 of file cv.hpp.

MS_non_classical_ion_OBSOLETE = 1000371

non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.

Definition at line 1534 of file cv.hpp.

MS_onium_ion_OBSOLETE = 1000372

onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.

Definition at line 1537 of file cv.hpp.

MS_principal_ion_OBSOLETE = 1000373

principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.

Definition at line 1540 of file cv.hpp.

MS_positive_ion_OBSOLETE = 1000374

positive ion: An atomic or molecular species having a net positive electric charge.

Definition at line 1543 of file cv.hpp.

MS_protonated_molecule_OBSOLETE = 1000375

protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.

Definition at line 1546 of file cv.hpp.

MS_radical_ion_OBSOLETE = 1000376

radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.

Definition at line 1549 of file cv.hpp.

MS_reference_ion_OBSOLETE = 1000377

reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.

Definition at line 1552 of file cv.hpp.

MS_stable_ion_OBSOLETE = 1000378

stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.

Definition at line 1555 of file cv.hpp.

MS_unstable_ion_OBSOLETE = 1000379

unstable ion: An ion with sufficient energy to dissociate within the ion source.

Definition at line 1558 of file cv.hpp.

MS_adiabatic_ionization = 1000380

adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.

Definition at line 1561 of file cv.hpp.

MS_associative_ionization = 1000381

associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.

Definition at line 1564 of file cv.hpp.

MS_atmospheric_pressure_photoionization = 1000382

atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.

Definition at line 1567 of file cv.hpp.

MS_autodetachment = 1000383

autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.

Definition at line 1570 of file cv.hpp.

MS_autoionization = 1000384

autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.

Definition at line 1573 of file cv.hpp.

MS_charge_exchange_ionization = 1000385

charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.

Definition at line 1576 of file cv.hpp.

MS_chemi_ionization = 1000386

chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.

Definition at line 1579 of file cv.hpp.

MS_desorption_ionization_on_silicon = 1000387

desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.

Definition at line 1582 of file cv.hpp.

MS_dissociative_ionization = 1000388

dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.

Definition at line 1585 of file cv.hpp.

MS_electron_ionization = 1000389

electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.

Definition at line 1588 of file cv.hpp.

MS_ion_desolvation_OBSOLETE = 1000390

ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.

Definition at line 1591 of file cv.hpp.

MS_ion_pair_formation_OBSOLETE = 1000391

ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.

Definition at line 1594 of file cv.hpp.

MS_ionization_efficiency = 1000392

ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.

Definition at line 1597 of file cv.hpp.

MS_laser_desorption_ionization = 1000393

laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.

Definition at line 1600 of file cv.hpp.

MS_liquid_secondary_ionization = 1000395

liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.

Definition at line 1603 of file cv.hpp.

MS_membrane_inlet = 1000396

membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.

Definition at line 1606 of file cv.hpp.

MS_microelectrospray = 1000397

microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray.

Definition at line 1609 of file cv.hpp.

MS_nanoelectrospray = 1000398

nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.

Definition at line 1612 of file cv.hpp.

Referenced by initializeTestData(), testComponentList(), and testInstrumentConfiguration().

MS_nanospray = MS_nanoelectrospray

nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.

Definition at line 1615 of file cv.hpp.

MS_penning_ionization = 1000399

penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.

Definition at line 1618 of file cv.hpp.

MS_plasma_desorption_ionization = 1000400

plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.

Definition at line 1621 of file cv.hpp.

MS_pre_ionization_state_OBSOLETE = 1000401

pre-ionization state: An electronic state capable of undergoing auto-Ionization.

Definition at line 1624 of file cv.hpp.

MS_secondary_ionization = 1000402

secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.

Definition at line 1627 of file cv.hpp.

MS_soft_ionization = 1000403

soft ionization: The formation of gas-phase ions without extensive fragmentation.

Definition at line 1630 of file cv.hpp.

MS_spark_ionization = 1000404

spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.

Definition at line 1633 of file cv.hpp.

MS_surface_assisted_laser_desorption_ionization = 1000405

surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.

Definition at line 1636 of file cv.hpp.

MS_surface_ionization = 1000406

surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.

Definition at line 1639 of file cv.hpp.

MS_thermal_ionization = 1000407

thermal ionization: The ionization of a neutral species through contact with a high temperature surface.

Definition at line 1642 of file cv.hpp.

MS_vertical_ionization = 1000408

vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.

Definition at line 1645 of file cv.hpp.

MS_association_reaction_OBSOLETE = 1000409

association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.

Definition at line 1648 of file cv.hpp.

MS_alpha_cleavage_OBSOLETE = 1000410

alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.

Definition at line 1651 of file cv.hpp.

MS_beta_cleavage_OBSOLETE = 1000411

beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.

Definition at line 1654 of file cv.hpp.

MS_buffer_gas = 1000412

buffer gas: An inert gas used for collisional deactivation of internally excited ions.

Definition at line 1657 of file cv.hpp.

MS_charge_induced_fragmentation_OBSOLETE = 1000413

charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.

Definition at line 1660 of file cv.hpp.

MS_charge_inversion_reaction_OBSOLETE = 1000414

charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.

Definition at line 1663 of file cv.hpp.

MS_charge_permutation_reaction_OBSOLETE = 1000415

charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.

Definition at line 1666 of file cv.hpp.

MS_charge_stripping_reaction_OBSOLETE = 1000416

charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.

Definition at line 1669 of file cv.hpp.

MS_charge_transfer_reaction_OBSOLETE = 1000417

charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.

Definition at line 1672 of file cv.hpp.

MS_collisional_excitation_OBSOLETE = 1000418

collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.

Definition at line 1675 of file cv.hpp.

MS_collision_gas = 1000419

collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.

Definition at line 1678 of file cv.hpp.

MS_heterolytic_cleavage_OBSOLETE = 1000420

heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.

Definition at line 1681 of file cv.hpp.

MS_high_energy_collision_OBSOLETE = 1000421

high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.

Definition at line 1684 of file cv.hpp.

MS_beam_type_collision_induced_dissociation = 1000422

beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell.

Definition at line 1687 of file cv.hpp.

HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell.

Definition at line 1690 of file cv.hpp.

Referenced by createSpectrumList(), and testMS2Activation().

MS_homolytic_cleavage_OBSOLETE = 1000423

homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.

Definition at line 1693 of file cv.hpp.

MS_hydrogen_deuterium_exchange_OBSOLETE = 1000424

hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.

Definition at line 1696 of file cv.hpp.

MS_ion_energy_loss_spectrum_OBSOLETE = 1000425

ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.

Definition at line 1699 of file cv.hpp.

MS_ionizing_collision_OBSOLETE = 1000426

ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.

Definition at line 1702 of file cv.hpp.

MS_ion_molecule_reaction_OBSOLETE = 1000427

ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.

Definition at line 1705 of file cv.hpp.

MS_ion_neutral_complex_OBSOLETE = 1000428

ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.

Definition at line 1708 of file cv.hpp.

MS_ion_neutral_species_reaction_OBSOLETE = 1000429

ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.

Definition at line 1711 of file cv.hpp.

MS_ion_neutral_species_exchange_reaction_OBSOLETE = 1000430

ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.

Definition at line 1714 of file cv.hpp.

MS_kinetic_method_OBSOLETE = 1000431

kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.

Definition at line 1717 of file cv.hpp.

MS_low_energy_collisions_OBSOLETE = 1000432

low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.

Definition at line 1720 of file cv.hpp.

MS_low_energy_collision_induced_dissociation = 1000433

low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.

Definition at line 1723 of file cv.hpp.

MS_McLafferty_Rearrangement_OBSOLETE = 1000434

McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.

Definition at line 1726 of file cv.hpp.

MS_photodissociation = 1000435

photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.

Definition at line 1729 of file cv.hpp.

MS_multiphoton_dissociation = MS_photodissociation

multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.

Definition at line 1732 of file cv.hpp.

MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.

Definition at line 1735 of file cv.hpp.

MS_partial_charge_transfer_reaction_OBSOLETE = 1000436

partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.

Definition at line 1738 of file cv.hpp.

MS_ion_reaction_OBSOLETE = 1000437

ion reaction: Chemical transformation involving an ion.

Definition at line 1741 of file cv.hpp.

MS_superelastic_collision_OBSOLETE = 1000438

superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.

Definition at line 1744 of file cv.hpp.

MS_surface_induced_reaction_OBSOLETE = 1000439

surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.

Definition at line 1747 of file cv.hpp.

MS_unimolecular_dissociation_OBSOLETE = 1000440

unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.

Definition at line 1750 of file cv.hpp.

MS_scan = 1000441

scan: Function or process of the mass spectrometer where it records a spectrum.

Definition at line 1753 of file cv.hpp.

MS_spectrum = 1000442

spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.

Definition at line 1756 of file cv.hpp.

MS_mass_analyzer_type = 1000443

mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.

Definition at line 1759 of file cv.hpp.

Referenced by FTSieve::accept(), testBasic(), and testIsA().

MS_m_z_Separation_Method_OBSOLETE = 1000444

m/z Separation Method: Mass/charge separation Method.

Definition at line 1762 of file cv.hpp.

MS_sequential_m_z_separation_method_OBSOLETE = 1000445

sequential m/z separation method: Sequential m/z separation method.

Definition at line 1765 of file cv.hpp.

MS_fast_ion_bombardment = 1000446

fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.

Definition at line 1768 of file cv.hpp.

FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.

Definition at line 1771 of file cv.hpp.

MS_LTQ = 1000447

LTQ: Finnigan LTQ MS.

Definition at line 1774 of file cv.hpp.

MS_LTQ_FT = 1000448

LTQ FT: Finnigan LTQ FT MS.

Definition at line 1777 of file cv.hpp.

MS_LTQ_Orbitrap = 1000449

LTQ Orbitrap: Finnigan LTQ Orbitrap MS.

Definition at line 1780 of file cv.hpp.

MS_LXQ = 1000450

LXQ: Finnigan LXQ MS.

Definition at line 1783 of file cv.hpp.

MS_mass_analyzer = 1000451

mass analyzer: Terms used to describe the Analyzer.

Definition at line 1786 of file cv.hpp.

Referenced by doSomething(), printSpectrumList(), and testMSDataConstruction().

MS_analyzer = MS_mass_analyzer

analyzer (mass analyzer): Terms used to describe the Analyzer.

Definition at line 1789 of file cv.hpp.

MS_data_transformation = 1000452

data transformation: Terms used to describe types of data processing.

Definition at line 1792 of file cv.hpp.

MS_data_processing = MS_data_transformation

data processing (data transformation): Terms used to describe types of data processing.

Definition at line 1795 of file cv.hpp.

MS_detector = 1000453

detector: The device that detects ions.

Definition at line 1798 of file cv.hpp.

MS_instrument_additional_description_OBSOLETE = 1000454

instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.

Definition at line 1801 of file cv.hpp.

MS_ion_selection_attribute = 1000455

ion selection attribute: Ion selection properties that are associated with a value.

Definition at line 1804 of file cv.hpp.

MS_precursor_activation = 1000456

precursor activation: Terms to describe the precursor activation.

Definition at line 1807 of file cv.hpp.

MS_activation = MS_precursor_activation

activation (precursor activation): Terms to describe the precursor activation.

Definition at line 1810 of file cv.hpp.

MS_sample = 1000457

sample: Terms to describe the sample.

Definition at line 1813 of file cv.hpp.

MS_source = 1000458

source: Terms to describe the source.

Definition at line 1816 of file cv.hpp.

MS_spectrum_instrument_description_OBSOLETE = 1000459

spectrum instrument description: Terms used to describe the spectrum.

Definition at line 1819 of file cv.hpp.

MS_unit_OBSOLETE = 1000460

unit: Terms to describe units.

Definition at line 1822 of file cv.hpp.

MS_additional_description_OBSOLETE = 1000461

additional description: Terms to describe Additional.

Definition at line 1825 of file cv.hpp.

MS_ion_optics = 1000462

ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.

Definition at line 1828 of file cv.hpp.

MS_instrument = 1000463

instrument: Description of the instrument or the mass spectrometer.

Definition at line 1831 of file cv.hpp.

Referenced by test().

MS_instrument_configuration = MS_instrument

instrument configuration (instrument): Description of the instrument or the mass spectrometer.

Definition at line 1834 of file cv.hpp.

MS_mass_unit_OBSOLETE = 1000464

mass unit: A unit of measurement for mass.

Definition at line 1837 of file cv.hpp.

MS_scan_polarity = 1000465

scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.

Definition at line 1840 of file cv.hpp.

Referenced by test().

MS_alternating_OBSOLETE = 1000466

alternating: Alternating.

Definition at line 1843 of file cv.hpp.

MS_1200_series_LC_MSD_SL = 1000467

1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2.

Definition at line 1846 of file cv.hpp.

MS_6110_Quadrupole_LC_MS = 1000468

6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.

Definition at line 1849 of file cv.hpp.

MS_6120_Quadrupole_LC_MS = 1000469

6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.

Definition at line 1852 of file cv.hpp.

MS_6130_Quadrupole_LC_MS = 1000470

6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.

Definition at line 1855 of file cv.hpp.

MS_6140_Quadrupole_LC_MS = 1000471

6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.

Definition at line 1858 of file cv.hpp.

MS_6210_Time_of_Flight_LC_MS = 1000472

6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.

Definition at line 1861 of file cv.hpp.

MS_6310_Ion_Trap_LC_MS = 1000473

6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.

Definition at line 1864 of file cv.hpp.

MS_6320_Ion_Trap_LC_MS = 1000474

6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.

Definition at line 1867 of file cv.hpp.

MS_6330_Ion_Trap_LC_MS = 1000475

6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.

Definition at line 1870 of file cv.hpp.

MS_6340_Ion_Trap_LC_MS = 1000476

6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.

Definition at line 1873 of file cv.hpp.

MS_6410_Triple_Quadrupole_LC_MS = 1000477

6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.

Definition at line 1876 of file cv.hpp.

MS_6410_Triple_Quad_LC_MS = MS_6410_Triple_Quadrupole_LC_MS

6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.

Definition at line 1879 of file cv.hpp.

MS_1200_series_LC_MSD_VL = 1000478

1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.

Definition at line 1882 of file cv.hpp.

MS_purgatory_OBSOLETE = 1000479

purgatory: Terms that will likely become obsolete unless there are wails of dissent.

Definition at line 1885 of file cv.hpp.

MS_mass_analyzer_attribute = 1000480

mass analyzer attribute: Analyzer properties that are associated with a value.

Definition at line 1888 of file cv.hpp.

MS_detector_attribute = 1000481

detector attribute: Detector attribute recognized as a value.

Definition at line 1891 of file cv.hpp.

MS_source_attribute = 1000482

source attribute: Property of a source device that need a value.

Definition at line 1894 of file cv.hpp.

MS_Thermo_Fisher_Scientific_instrument_model = 1000483

Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.

Definition at line 1897 of file cv.hpp.

MS_orbitrap = 1000484

orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.

Definition at line 1900 of file cv.hpp.

Referenced by createSpectrumList(), and testMassAnalyzerFilter().

MS_nanospray_inlet = 1000485

nanospray inlet: Nanospray Inlet.

Definition at line 1903 of file cv.hpp.

MS_source_potential = 1000486

source potential: Potential difference at the MS source in volts.

Definition at line 1906 of file cv.hpp.

MS_ion_optics_attribute = 1000487

ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.

Definition at line 1909 of file cv.hpp.

MS_Hitachi_instrument_model = 1000488

Hitachi instrument model: Hitachi instrument model.

Definition at line 1912 of file cv.hpp.

MS_Varian_instrument_model = 1000489

Varian instrument model: Varian instrument model.

Definition at line 1915 of file cv.hpp.

MS_Agilent_instrument_model = 1000490

Agilent instrument model: Agilent instrument model.

Definition at line 1918 of file cv.hpp.

MS_Dionex_instrument_model = 1000491

Dionex instrument model: Dionex instrument model.

Definition at line 1921 of file cv.hpp.

MS_Thermo_Electron_instrument_model = 1000492

Thermo Electron instrument model: Thermo Electron Corporation instrument model.

Definition at line 1924 of file cv.hpp.

MS_Finnigan_MAT_instrument_model = 1000493

Finnigan MAT instrument model: Finnigan MAT instrument model.

Definition at line 1927 of file cv.hpp.

MS_Thermo_Scientific_instrument_model = 1000494

Thermo Scientific instrument model: Thermo Scientific instrument model.

Definition at line 1930 of file cv.hpp.

MS_Applied_Biosystems_instrument_model = 1000495

Applied Biosystems instrument model: Applied Biosystems instrument model.

Definition at line 1933 of file cv.hpp.

ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.

Definition at line 1936 of file cv.hpp.

MS_instrument_attribute = 1000496

instrument attribute: Instrument properties that are associated with a value.

Definition at line 1939 of file cv.hpp.

MS_zoom_scan = 1000497

zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.

Definition at line 1942 of file cv.hpp.

MS_enhanced_resolution_scan = MS_zoom_scan

enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.

Definition at line 1945 of file cv.hpp.

MS_full_scan_OBSOLETE = 1000498

full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.

Definition at line 1948 of file cv.hpp.

MS_spectrum_attribute = 1000499

spectrum attribute: Spectrum properties that are associated with a value.

Definition at line 1951 of file cv.hpp.

MS_scan_window_upper_limit = 1000500

scan window upper limit: The lower m/z bound of a mass spectrometer scan window.

Definition at line 1954 of file cv.hpp.

Referenced by initializeTestData(), and test().

MS_scan_window_lower_limit = 1000501

scan window lower limit: The upper m/z bound of a mass spectrometer scan window.

Definition at line 1957 of file cv.hpp.

Referenced by initializeTestData(), and test().

MS_dwell_time = 1000502

dwell time: The time spent gathering data across a peak.

Definition at line 1960 of file cv.hpp.

MS_scan_attribute = 1000503

scan attribute: Scan properties that are associated with a value.

Definition at line 1963 of file cv.hpp.

MS_base_peak_m_z = 1000504

base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.

Definition at line 1966 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), and verifyScanInfo().

MS_base_peak_intensity = 1000505

base peak intensity: The intensity of the greatest peak in the mass spectrum.

Definition at line 1969 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), and test_v3().

MS_ion_role_OBSOLETE = 1000506

ion role: Ion Role.

Definition at line 1972 of file cv.hpp.

MS_ion_attribute_OBSOLETE = 1000507

ion attribute: Ion properties that are associated with a value.

Definition at line 1975 of file cv.hpp.

MS_ion_chemical_type_OBSOLETE = 1000508

ion chemical type: Ion Type.

Definition at line 1978 of file cv.hpp.

MS_activation_energy = 1000509

activation energy: Activation Energy.

Definition at line 1981 of file cv.hpp.

MS_precursor_activation_attribute = 1000510

precursor activation attribute: Precursor Activation Attribute.

Definition at line 1984 of file cv.hpp.

MS_ms_level = 1000511
MS_filter_string = 1000512

filter string: A string unique to Thermo instrument describing instrument settings for the scan.

Definition at line 1990 of file cv.hpp.

Referenced by initializeTestData(), testScan(), testScanList(), and testSpectrum().

MS_binary_data_array = 1000513

binary data array: A data array of values.

Definition at line 1993 of file cv.hpp.

MS_m_z_array = 1000514

m/z array: A data array of m/z values.

Definition at line 1996 of file cv.hpp.

Referenced by initializeSpectrumList(), initializeTestData(), test(), test_v3(), testBinaryDataArrayExternalMetadata(), testSpectrum(), and testSpectrumListSimple().

MS_intensity_array = 1000515

intensity array: A data array of intensity values.

Definition at line 1999 of file cv.hpp.

Referenced by initializeSpectrumList(), initializeTestData(), test(), test_v3(), testChromatogram(), testSpectrum(), testSpectrumListSimple(), and testWriteRead().

MS_charge_array = 1000516

charge array: A data array of charge values.

Definition at line 2002 of file cv.hpp.

MS_signal_to_noise_array = 1000517

signal to noise array: A data array of signal-to-noise values.

Definition at line 2005 of file cv.hpp.

MS_binary_data_type = 1000518

binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.

Definition at line 2008 of file cv.hpp.

MS_32_bit_integer = 1000519

32-bit integer: Signed 32-bit little-endian integer.

Definition at line 2011 of file cv.hpp.

MS_16_bit_float_OBSOLETE = 1000520

16-bit float: Signed 16-bit float.

Definition at line 2014 of file cv.hpp.

MS_32_bit_float = 1000521

32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.

Definition at line 2017 of file cv.hpp.

MS_64_bit_integer = 1000522

64-bit integer: Signed 64-bit little-endian integer.

Definition at line 2020 of file cv.hpp.

MS_64_bit_float = 1000523

64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.

Definition at line 2023 of file cv.hpp.

Referenced by testBinaryDataArrayExternalMetadata().

MS_data_file_content = 1000524

data file content: Describes the data content on the file.

Definition at line 2026 of file cv.hpp.

MS_spectrum_representation = 1000525

spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.

Definition at line 2029 of file cv.hpp.

MS_Waters_raw_format = 1000526

Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition.

Definition at line 2032 of file cv.hpp.

Referenced by testIdentifyFileFormat().

MS_highest_observed_m_z = 1000527

highest observed m/z: Highest m/z value observed in the m/z array.

Definition at line 2035 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), testIsChildOf(), and verifyScanInfo().

MS_lowest_observed_m_z = 1000528

lowest observed m/z: Lowest m/z value observed in the m/z array.

Definition at line 2038 of file cv.hpp.

Referenced by initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), testIs(), testIsChildOf(), and verifyScanInfo().

MS_instrument_serial_number = 1000529

instrument serial number: Serial Number of the instrument.

Definition at line 2041 of file cv.hpp.

Referenced by initializeTestData(), and testInstrumentConfiguration().

MS_file_format_conversion = 1000530

file format conversion: Conversion of one file format to another.

Definition at line 2044 of file cv.hpp.

MS_software = 1000531

software: Software related to the recording or transformation of spectra.

Definition at line 2047 of file cv.hpp.

Referenced by test(), and testSoftware().

MS_Xcalibur = 1000532

Xcalibur: Thermo Finnigan software for data acquisition and analysis.

Definition at line 2050 of file cv.hpp.

Referenced by initializeTestData(), and testSoftware().

MS_Bioworks = 1000533

Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.

Definition at line 2053 of file cv.hpp.

Referenced by initializeTestData().

MS_MassLynx = 1000534

MassLynx: Micromass software for data acquisition and analysis.

Definition at line 2056 of file cv.hpp.

MS_FlexAnalysis = 1000535

FlexAnalysis: Bruker software for data analysis.

Definition at line 2059 of file cv.hpp.

MS_Data_Explorer = 1000536

Data Explorer: Applied Biosystems software for data acquisition and analysis.

Definition at line 2062 of file cv.hpp.

MS_4700_Explorer = 1000537

4700 Explorer: Applied Biosystems software for data acquisition and analysis.

Definition at line 2065 of file cv.hpp.

MS_massWolf = 1000538

massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.

Definition at line 2068 of file cv.hpp.

MS_wolf = MS_massWolf

wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.

Definition at line 2071 of file cv.hpp.

Referenced by testSourceFile().

MS_Voyager_Biospectrometry_Workstation_System = 1000539

Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.

Definition at line 2074 of file cv.hpp.

MS_FlexControl = 1000540

FlexControl: Bruker software for data acquisition.

Definition at line 2077 of file cv.hpp.

MS_ReAdW = 1000541

ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced "readraw".

Definition at line 2080 of file cv.hpp.

MS_MzStar = 1000542

MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.

Definition at line 2083 of file cv.hpp.

MS_data_processing_action = 1000543

data processing action: Data processing attribute used to describe the type of data processing performed on the data file.

Definition at line 2086 of file cv.hpp.

MS_Conversion_to_mzML = 1000544

Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.

Definition at line 2089 of file cv.hpp.

Referenced by initializeTestData(), and test().

MS_Conversion_to_mzXML = 1000545

Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.

Definition at line 2092 of file cv.hpp.

MS_Conversion_to_mzData = 1000546

Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.

Definition at line 2095 of file cv.hpp.

MS_object_attribute = 1000547

object attribute: Object Attribute.

Definition at line 2098 of file cv.hpp.

MS_sample_attribute = 1000548

sample attribute: Sample properties that are associated with a value.

Definition at line 2101 of file cv.hpp.

MS_selection_window_attribute = 1000549

selection window attribute: Selection window properties that are associated with a value.

Definition at line 2104 of file cv.hpp.

MS_time_unit_OBSOLETE = 1000550

time unit: Time Unit.

Definition at line 2107 of file cv.hpp.

MS_Analyst = 1000551

Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.

Definition at line 2110 of file cv.hpp.

MS_maldi_spot_identifier_OBSOLETE = 1000552

maldi spot identifier: Maldi Spot Identifier.

Definition at line 2113 of file cv.hpp.

MS_Trapper = 1000553

Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.

Definition at line 2116 of file cv.hpp.

MS_LCQ_Deca = 1000554

LCQ Deca: ThermoFinnigan LCQ Deca.

Definition at line 2119 of file cv.hpp.

Referenced by initializeTestData(), main(), test(), and testInstrumentConfiguration().

MS_LTQ_Orbitrap_Discovery = 1000555

LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.

Definition at line 2122 of file cv.hpp.

MS_LTQ_Orbitrap_XL = 1000556

LTQ Orbitrap XL: LTQ Orbitrap XL.

Definition at line 2125 of file cv.hpp.

MS_LTQ_FT_Ultra = 1000557

LTQ FT Ultra: LTQ FT Ultra.

Definition at line 2128 of file cv.hpp.

MS_GC_Quantum = 1000558

GC Quantum: GC Quantum.

Definition at line 2131 of file cv.hpp.

MS_spectrum_type = 1000559

spectrum type: Spectrum type.

Definition at line 2134 of file cv.hpp.

Referenced by EvenMS2Predicate::accept(), and testParamContainer().

MS_mass_spectrometer_file_format = 1000560

mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.

Definition at line 2137 of file cv.hpp.

MS_data_file_checksum_type = 1000561

data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.

Definition at line 2140 of file cv.hpp.

MS_ABI_WIFF_format = 1000562

ABI WIFF format: Applied Biosystems WIFF file format.

Definition at line 2143 of file cv.hpp.

Referenced by testIdentifyFileFormat().

MS_Thermo_RAW_format = 1000563

Thermo RAW format: Thermo Scientific RAW file format.

Definition at line 2146 of file cv.hpp.

Referenced by initializeTestData(), and testFileDescription().

MS_PSI_mzData_format = 1000564

PSI mzData format: Proteomics Standards Inititative mzData file format.

Definition at line 2149 of file cv.hpp.

MS_Micromass_PKL_format = 1000565

Micromass PKL format: Micromass PKL file format.

Definition at line 2152 of file cv.hpp.

MS_ISB_mzXML_format = 1000566

ISB mzXML format: Institute of Systems Biology mzXML file format.

Definition at line 2155 of file cv.hpp.

Referenced by testIdentifyFileFormat().

MS_Bruker_Agilent_YEP_format = 1000567

Bruker/Agilent YEP format: Bruker/Agilent YEP file format.

Definition at line 2158 of file cv.hpp.

Referenced by test().

MS_MD5 = 1000568

MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.

Definition at line 2161 of file cv.hpp.

MS_SHA_1 = 1000569

SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.

Definition at line 2164 of file cv.hpp.

Referenced by initializeTestData(), testFileDescription(), and testSHA1().

MS_spectra_combination = 1000570

spectra combination: Method used to combine the mass spectra.

Definition at line 2167 of file cv.hpp.

MS_sum_of_spectra = 1000571

sum of spectra: Spectra Sum.

Definition at line 2170 of file cv.hpp.

Referenced by testScanList().

MS_binary_data_compression_type = 1000572

binary data compression type: Compression Type.

Definition at line 2173 of file cv.hpp.

Referenced by test().

MS_median_of_spectra = 1000573

median of spectra: Spectra is combined by calculating the median of the spectra.

Definition at line 2176 of file cv.hpp.

MS_zlib_compression = 1000574

zlib compression: Zlib.

Definition at line 2179 of file cv.hpp.

Referenced by test().

MS_mean_of_spectra = 1000575

mean of spectra: Spectra is combined by calculating the mean of the spectra.

Definition at line 2182 of file cv.hpp.

MS_no_compression = 1000576

no compression: No Compression.

Definition at line 2185 of file cv.hpp.

Referenced by testBinaryDataArrayExternalMetadata().

MS_raw_data_file = 1000577

raw data file: Describes the type of file and its content.

Definition at line 2188 of file cv.hpp.

MS_source_file = MS_raw_data_file

source file (raw data file): Describes the type of file and its content.

Definition at line 2191 of file cv.hpp.

MS_LCQ_Fleet = 1000578

LCQ Fleet: LCQ Fleet.

Definition at line 2194 of file cv.hpp.

MS_MS1_spectrum = 1000579

MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.

Definition at line 2197 of file cv.hpp.

Referenced by createSpectrumList().

MS_full_spectrum = MS_MS1_spectrum

full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.

Definition at line 2200 of file cv.hpp.

MS_Q1_spectrum = MS_MS1_spectrum

Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.

Definition at line 2203 of file cv.hpp.

MS_Q3_spectrum = MS_MS1_spectrum

Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.

Definition at line 2206 of file cv.hpp.

MS_Single_Stage_Mass_Spectrometry = MS_MS1_spectrum

Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.

Definition at line 2209 of file cv.hpp.

MS_MSn_spectrum = 1000580

MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.

Definition at line 2212 of file cv.hpp.

Referenced by createSpectrumList(), initializeTestData(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), makeSpectrumPtr(), test(), testDeisotoping(), testFileDescription(), testMS2Denoising(), testParamContainer(), testPrecursorMassRemoval(), testSpectrum(), testSpectrumListSimple(), and testZeroSamplesFilter().

MS_multiple_stage_mass_spectrometry_spectrum = MS_MSn_spectrum

multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.

Definition at line 2215 of file cv.hpp.

MS_nth_generation_product_ion_spectrum = MS_MSn_spectrum

nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.

Definition at line 2218 of file cv.hpp.

MS_product_ion_spectrum = MS_MSn_spectrum

product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.

Definition at line 2221 of file cv.hpp.

MS_CRM_spectrum = 1000581

CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.

Definition at line 2224 of file cv.hpp.

MS_SIM_spectrum = 1000582

SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).

Definition at line 2227 of file cv.hpp.

MS_MIM_spectrum = MS_SIM_spectrum

MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).

Definition at line 2230 of file cv.hpp.

MS_multiple_ion_monitoring_spectrum = MS_SIM_spectrum

multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).

Definition at line 2233 of file cv.hpp.

MS_selected_ion_monitoring_spectrum = MS_SIM_spectrum

selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).

Definition at line 2236 of file cv.hpp.

MS_SRM_spectrum = 1000583

SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.

Definition at line 2239 of file cv.hpp.

MS_MRM_spectrum = MS_SRM_spectrum

MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.

Definition at line 2242 of file cv.hpp.

MS_multiple_reaction_monitoring_spectrum = MS_SRM_spectrum

multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.

Definition at line 2245 of file cv.hpp.

MS_selected_reaction_monitoring_spectrum = MS_SRM_spectrum

selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.

Definition at line 2248 of file cv.hpp.

MS_mzML_format = 1000584

mzML format: Proteomics Standards Inititative mzML file format.

Definition at line 2251 of file cv.hpp.

Referenced by testIdentifyFileFormat(), testSourceFile(), and testSpectraData().

MS_contact_attribute = 1000585

contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.

Definition at line 2254 of file cv.hpp.

MS_contact_name = 1000586

contact name: Name of the contact person or organization.

Definition at line 2257 of file cv.hpp.

Referenced by initializeTestData(), and testFileDescription().

MS_contact_address = 1000587

contact address: Postal address of the contact person or organization.

Definition at line 2260 of file cv.hpp.

Referenced by initializeTestData(), testContact(), testOrganization(), and testPerson().

MS_contact_URL = 1000588

contact URL: Uniform Resource Locator related to the contact person or organization.

Definition at line 2263 of file cv.hpp.

Referenced by initializeTestData().

MS_contact_email = 1000589

contact email: Email address of the contact person or organization.

Definition at line 2266 of file cv.hpp.

Referenced by initializeTestData(), test(), testContact(), testOrganization(), and testPerson().

MS_contact_affiliation = 1000590

contact affiliation: Home institution of the contact person.

Definition at line 2269 of file cv.hpp.

MS_MzWiff = 1000591

MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.

Definition at line 2272 of file cv.hpp.

MS_smoothing = 1000592

smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.

Definition at line 2275 of file cv.hpp.

MS_baseline_reduction = 1000593

baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.

Definition at line 2278 of file cv.hpp.

MS_low_intensity_data_point_removal = 1000594

low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.

Definition at line 2281 of file cv.hpp.

thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.

Definition at line 2284 of file cv.hpp.

MS_time_array = 1000595

time array: A data array of relative time offset values from a reference time.

Definition at line 2287 of file cv.hpp.

Referenced by initializeTestData(), and testChromatogram().

MS_measurement_method = 1000596

measurement method: An attribute of resolution when recording the detector response in absence of the analyte.

Definition at line 2290 of file cv.hpp.

MS_ion_optics_type = 1000597

ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.

Definition at line 2293 of file cv.hpp.

MS_electron_transfer_dissociation = 1000598

electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.

Definition at line 2296 of file cv.hpp.

Referenced by createSpectrumList(), testDeisotoping(), testMS2Activation(), testMS2Denoising(), testPrecursorMassRemoval(), and testZeroSamplesFilter().

ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.

Definition at line 2299 of file cv.hpp.

Referenced by test(), and testParamContainer().

MS_pulsed_q_dissociation = 1000599

pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.

Definition at line 2302 of file cv.hpp.

PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.

Definition at line 2305 of file cv.hpp.

Referenced by testParamContainer().

MS_Proteios = 1000600

Proteios: Database application and analysis platform for proteomics.

Definition at line 2308 of file cv.hpp.

MS_ProteinLynx_Global_Server = 1000601

ProteinLynx Global Server: Waters software for data analysis.

Definition at line 2311 of file cv.hpp.

MS_Shimadzu_MALDI_TOF_instrument_model = 1000602

Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.

Definition at line 2314 of file cv.hpp.

MS_Shimadzu_Scientific_Instruments_instrument_model = 1000603

Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.

Definition at line 2317 of file cv.hpp.

MS_LCMS_IT_TOF = 1000604

LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.

Definition at line 2320 of file cv.hpp.

MS_LCMS_2010EV = 1000605

LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.

Definition at line 2323 of file cv.hpp.

MS_LCMS_2010A = 1000606

LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.

Definition at line 2326 of file cv.hpp.

MS_AXIMA_CFR_MALDI_TOF = 1000607

AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.

Definition at line 2329 of file cv.hpp.

MS_AXIMA_QIT = 1000608

AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.

Definition at line 2332 of file cv.hpp.

MS_AXIMA_CFR_plus = 1000609

AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.

Definition at line 2335 of file cv.hpp.

MS_AXIMA_Performance_MALDI_TOF_TOF = 1000610

AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.

Definition at line 2338 of file cv.hpp.

MS_AXIMA_Confidence_MALDI_TOF = 1000611

AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.

Definition at line 2341 of file cv.hpp.

MS_AXIMA_Assurance_Linear_MALDI_TOF = 1000612

AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.

Definition at line 2344 of file cv.hpp.

MS_DTA_format = 1000613

DTA format: SEQUEST DTA file format.

Definition at line 2347 of file cv.hpp.

MS_ProteinLynx_Global_Server_mass_spectrum_XML_format = 1000614

ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server.

Definition at line 2350 of file cv.hpp.

MS_ProteoWizard_software = 1000615

ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.

Definition at line 2353 of file cv.hpp.

Referenced by test().

pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.

Definition at line 2356 of file cv.hpp.

Referenced by initializeTestData().

MS_preset_scan_configuration = 1000616

preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo "scan event", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.

Definition at line 2359 of file cv.hpp.

Referenced by createSpectrumList(), printSpectrumList(), and test().

MS_wavelength_array = 1000617

wavelength array: A data array of electromagnetic radiation wavelength values.

Definition at line 2362 of file cv.hpp.

MS_highest_observed_wavelength = 1000618

highest observed wavelength: Highest wavelength observed in an EMR spectrum.

Definition at line 2365 of file cv.hpp.

MS_lowest_observed_wavelength = 1000619

lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.

Definition at line 2368 of file cv.hpp.

MS_PDA_spectrum_OBSOLETE = 1000620

PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).

Definition at line 2371 of file cv.hpp.

MS_photodiode_array_detector = 1000621

photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light.

Definition at line 2374 of file cv.hpp.

PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light.

Definition at line 2377 of file cv.hpp.

MS_Surveyor_PDA = 1000622

Surveyor PDA: Surveyor PDA.

Definition at line 2380 of file cv.hpp.

MS_Accela_PDA = 1000623

Accela PDA: Accela PDA.

Definition at line 2383 of file cv.hpp.

MS_inductive_detector = 1000624

inductive detector: Inductive detector.

Definition at line 2386 of file cv.hpp.

MS_image_current_detector = MS_inductive_detector

image current detector (inductive detector): Inductive detector.

Definition at line 2389 of file cv.hpp.

MS_chromatogram = 1000625

chromatogram: The representation of detector response versus time.

Definition at line 2392 of file cv.hpp.

MS_chromatogram_type = 1000626

chromatogram type: Broad category or type of a chromatogram.

Definition at line 2395 of file cv.hpp.

MS_selected_ion_current_chromatogram = 1000627

selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.

Definition at line 2398 of file cv.hpp.

MS_SIC_chromatogram = MS_selected_ion_current_chromatogram

SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.

Definition at line 2401 of file cv.hpp.

MS_basepeak_chromatogram = 1000628

basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.

Definition at line 2404 of file cv.hpp.

MS_low_intensity_threshold = 1000629

low intensity threshold: Threshold below which some action is taken.

Definition at line 2407 of file cv.hpp.

Referenced by testProteinDetectionProtocol().

MS_data_processing_parameter = 1000630

data processing parameter: Data processing parameter used in the data processing performed on the data file.

Definition at line 2410 of file cv.hpp.

MS_high_intensity_threshold = 1000631

high intensity threshold: Threshold above which some action is taken.

Definition at line 2413 of file cv.hpp.

MS_Q_Tof_Premier = 1000632

Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.

Definition at line 2416 of file cv.hpp.

MS_possible_charge_state = 1000633

possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.

Definition at line 2419 of file cv.hpp.

Referenced by checkSpectrumInfo(), initializeTinyMGF(), initializeTinyMS2(), test(), and test_v3().

MS_DSQ = 1000634

DSQ: ThermoFinnigan DSQ GC-MS.

Definition at line 2422 of file cv.hpp.

MS_ITQ_700 = 1000635

ITQ 700: Thermo Scientific ITQ 700 GC-MS.

Definition at line 2425 of file cv.hpp.

MS_ITQ_900 = 1000636

ITQ 900: Thermo Scientific ITQ 900 GC-MS.

Definition at line 2428 of file cv.hpp.

MS_ITQ_1100 = 1000637

ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.

Definition at line 2431 of file cv.hpp.

MS_LTQ_XL_ETD = 1000638

LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.

Definition at line 2434 of file cv.hpp.

MS_LTQ_Orbitrap_XL_ETD = 1000639

LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.

Definition at line 2437 of file cv.hpp.

MS_DFS = 1000640

DFS: Thermo Scientific DFS HR GC-MS.

Definition at line 2440 of file cv.hpp.

MS_DSQ_II = 1000641

DSQ II: Thermo Scientific DSQ II GC-MS.

Definition at line 2443 of file cv.hpp.

MS_MALDI_LTQ_XL = 1000642

MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.

Definition at line 2446 of file cv.hpp.

MS_MALDI_LTQ_Orbitrap = 1000643

MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.

Definition at line 2449 of file cv.hpp.

MS_TSQ_Quantum_Access = 1000644

TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.

Definition at line 2452 of file cv.hpp.

MS_Element_XR = 1000645

Element XR: Thermo Scientific Element XR HR-ICP-MS.

Definition at line 2455 of file cv.hpp.

MS_Element_2 = 1000646

Element 2: Thermo Scientific Element 2 HR-ICP-MS.

Definition at line 2458 of file cv.hpp.

MS_Element_GD = 1000647

Element GD: Thermo Scientific Element GD Glow Discharge MS.

Definition at line 2461 of file cv.hpp.

MS_GC_IsoLink = 1000648

GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.

Definition at line 2464 of file cv.hpp.

MS_Exactive = 1000649

Exactive: Thermo Scientific Exactive MS.

Definition at line 2467 of file cv.hpp.

MS_Proteome_Discoverer = 1000650

Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.

Definition at line 2470 of file cv.hpp.

MS_3200_QTRAP = 1000651

3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.

Definition at line 2473 of file cv.hpp.

MS_4800_Plus_MALDI_TOF_TOF = 1000652

4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.

Definition at line 2476 of file cv.hpp.

MS_API_3200 = 1000653

API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.

Definition at line 2479 of file cv.hpp.

MS_API_5000 = 1000654

API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.

Definition at line 2482 of file cv.hpp.

MS_QSTAR_Elite = 1000655

QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.

Definition at line 2485 of file cv.hpp.

MS_QSTAR_Pulsar = 1000656

QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.

Definition at line 2488 of file cv.hpp.

MS_QSTAR_XL = 1000657

QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.

Definition at line 2491 of file cv.hpp.

MS_4800_Proteomics_Analyzer = 1000658

4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.

Definition at line 2494 of file cv.hpp.

MS_4000_Series_Explorer_Software = 1000659

4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis.

Definition at line 2497 of file cv.hpp.

MS_GPS_Explorer = 1000661

GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.

Definition at line 2500 of file cv.hpp.

MS_LightSight_Software = 1000662

LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.

Definition at line 2503 of file cv.hpp.

MS_ProteinPilot_Software = 1000663

ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.

Definition at line 2506 of file cv.hpp.

MS_TissueView_Software = 1000664

TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.

Definition at line 2509 of file cv.hpp.

MS_MarkerView_Software = 1000665

MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.

Definition at line 2512 of file cv.hpp.

MS_MRMPilot_Software = 1000666

MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.

Definition at line 2515 of file cv.hpp.

MS_BioAnalyst = 1000667

BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.

Definition at line 2518 of file cv.hpp.

MS_Pro_ID = 1000668

Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.

Definition at line 2521 of file cv.hpp.

MS_Pro_ICAT = 1000669

Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.

Definition at line 2524 of file cv.hpp.

MS_Pro_Quant = 1000670

Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.

Definition at line 2527 of file cv.hpp.

MS_Pro_BLAST = 1000671

Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.

Definition at line 2530 of file cv.hpp.

MS_Cliquid = 1000672

Cliquid: SCIEX Cliquid software for data analysis and quantitation.

Definition at line 2533 of file cv.hpp.

MS_MIDAS_Workflow_Designer = 1000673

MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.

Definition at line 2536 of file cv.hpp.

MS_MultiQuant = 1000674

MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.

Definition at line 2539 of file cv.hpp.

MS_6220_Time_of_Flight_LC_MS = 1000675

6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.

Definition at line 2542 of file cv.hpp.

MS_6510_Quadrupole_Time_of_Flight_LC_MS = 1000676

6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.

Definition at line 2545 of file cv.hpp.

MS_6520_Quadrupole_Time_of_Flight_LC_MS = 1000677

6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.

Definition at line 2548 of file cv.hpp.

MS_MassHunter_Data_Acquisition = 1000678

MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.

Definition at line 2551 of file cv.hpp.

MS_MassHunter_Easy_Access = 1000679

MassHunter Easy Access: Software for open access data acquisition.

Definition at line 2554 of file cv.hpp.

MS_MassHunter_Qualitative_Analysis = 1000680

MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.

Definition at line 2557 of file cv.hpp.

MS_MassHunter_Quantitative_Analysis = 1000681

MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data.

Definition at line 2560 of file cv.hpp.

MS_MassHunter_Metabolite_ID = 1000682

MassHunter Metabolite ID: Software for identification of metabolites.

Definition at line 2563 of file cv.hpp.

MS_MassHunter_BioConfirm = 1000683

MassHunter BioConfirm: Software for protein characterization.

Definition at line 2566 of file cv.hpp.

MS_Genespring_MS = 1000684

Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.

Definition at line 2569 of file cv.hpp.

MS_MassHunter_Mass_Profiler = 1000685

MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.

Definition at line 2572 of file cv.hpp.

MS_METLIN = 1000686

METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.

Definition at line 2575 of file cv.hpp.

MS_Spectrum_Mill_for_MassHunter_Workstation = 1000687

Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.

Definition at line 2578 of file cv.hpp.

MS_6300_Series_Ion_Trap_Data_Analysis_Software = 1000688

6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.

Definition at line 2581 of file cv.hpp.

MS_Agilent_software = 1000689

Agilent software: Agilent software for data acquisition and analysis.

Definition at line 2584 of file cv.hpp.

MS_SCIEX_software = 1000690

SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.

Definition at line 2587 of file cv.hpp.

MS_Applied_Biosystems_software = 1000691

Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.

Definition at line 2590 of file cv.hpp.

MS_Bruker_software = 1000692

Bruker software: Bruker software for data acquisition and analysis.

Definition at line 2593 of file cv.hpp.

MS_Thermo_Finnigan_software = 1000693

Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.

Definition at line 2596 of file cv.hpp.

MS_Waters_software = 1000694

Waters software: Waters software for data acquisition and analysis.

Definition at line 2599 of file cv.hpp.

MS_apex_ultra = 1000695

apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.

Definition at line 2602 of file cv.hpp.

MS_autoflex_III_smartbeam = 1000696

autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.

Definition at line 2605 of file cv.hpp.

MS_Bruker_Daltonics_HCT_Series = 1000697

Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.

Definition at line 2608 of file cv.hpp.

MS_HCTultra = 1000698

HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.

Definition at line 2611 of file cv.hpp.

MS_HCTultra_PTM = 1000699

HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.

Definition at line 2614 of file cv.hpp.

MS_HCTultra_ETD_II = 1000700

HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.

Definition at line 2617 of file cv.hpp.

MS_microflex_LT = 1000701

microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.

Definition at line 2620 of file cv.hpp.

MS_micrOTOF = 1000702

micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.

Definition at line 2623 of file cv.hpp.

MS_micrOTOF_Q = 1000703

micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.

Definition at line 2626 of file cv.hpp.

MS_micrOTOF_Q_II = 1000704

micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.

Definition at line 2629 of file cv.hpp.

MS_ultraflex_III_TOF_TOF = 1000705

ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.

Definition at line 2632 of file cv.hpp.

MS_apexControl = 1000706

apexControl: Bruker software for data acquisition.

Definition at line 2635 of file cv.hpp.

MS_BioTools = 1000707

BioTools: Bruker software for data analysis.

Definition at line 2638 of file cv.hpp.

MS_CLINPROT = 1000708

CLINPROT: Bruker CLINPROT software.

Definition at line 2641 of file cv.hpp.

MS_CLINPROT_micro = 1000709

CLINPROT micro: Bruker CLINPROT micro software.

Definition at line 2644 of file cv.hpp.

MS_CLINPROT_robot = 1000710

CLINPROT robot: Bruker CLINPROT robot software.

Definition at line 2647 of file cv.hpp.

MS_ClinProTools = 1000711

ClinProTools: Bruker ClinProTools software.

Definition at line 2650 of file cv.hpp.

MS_Compass = 1000712

Compass: Bruker Compass software.

Definition at line 2653 of file cv.hpp.

MS_Compass_for_HCT_esquire = 1000713

Compass for HCT/esquire: Bruker Compass for HCT/esquire software.

Definition at line 2656 of file cv.hpp.

MS_Compass_for_micrOTOF = 1000714

Compass for micrOTOF: Bruker Compass for micrOTOF software.

Definition at line 2659 of file cv.hpp.

MS_Compass_OpenAccess = 1000715

Compass OpenAccess: Bruker compass OpenAccess software.

Definition at line 2662 of file cv.hpp.

MS_Compass_Security_Pack = 1000716

Compass Security Pack: Bruker compass Security Pack software.

Definition at line 2665 of file cv.hpp.

MS_CompassXport = 1000717

CompassXport: Bruker stand-alone software for data conversion.

Definition at line 2668 of file cv.hpp.

MS_CompassXtract = 1000718

CompassXtract: Bruker software library for data access.

Definition at line 2671 of file cv.hpp.

MS_DataAnalysis = 1000719

DataAnalysis: Bruker software for data analysis.

Definition at line 2674 of file cv.hpp.

MS_dpControl = 1000720

dpControl: Bruker software for data acquisition.

Definition at line 2677 of file cv.hpp.

MS_esquireControl = 1000721

esquireControl: Bruker software for data acquisition.

Definition at line 2680 of file cv.hpp.

MS_flexImaging = 1000722

flexImaging: Bruker software for data analysis.

Definition at line 2683 of file cv.hpp.

MS_GENOLINK = 1000723

GENOLINK: Bruker GENOLINK software.

Definition at line 2686 of file cv.hpp.

MS_GenoTools = 1000724

GenoTools: Bruker GenoTools software.

Definition at line 2689 of file cv.hpp.

MS_HCTcontrol = 1000725

HCTcontrol: Bruker software for data acquisition.

Definition at line 2692 of file cv.hpp.

MS_micrOTOFcontrol = 1000726

micrOTOFcontrol: Bruker software for data acquisition.

Definition at line 2695 of file cv.hpp.

MS_PolyTools = 1000727

PolyTools: Bruker PolyTools software.

Definition at line 2698 of file cv.hpp.

MS_ProfileAnalysis = 1000728

ProfileAnalysis: Bruker software for data analysis.

Definition at line 2701 of file cv.hpp.

MS_PROTEINEER = 1000729

PROTEINEER: Bruker PROTEINEER software.

Definition at line 2704 of file cv.hpp.

MS_PROTEINEER_dp = 1000730

PROTEINEER dp: Bruker PROTEINEER dp software.

Definition at line 2707 of file cv.hpp.

MS_PROTEINEER_fc = 1000731

PROTEINEER fc: Bruker PROTEINEER fc software.

Definition at line 2710 of file cv.hpp.

MS_PROTEINEER_spII = 1000732

PROTEINEER spII: Bruker PROTEINEER spII software.

Definition at line 2713 of file cv.hpp.

MS_PROTEINEER_LC = 1000733

PROTEINEER-LC: Bruker PROTEINEER-LC software.

Definition at line 2716 of file cv.hpp.

MS_ProteinScape = 1000734

ProteinScape: Bruker ProteinScape software.

Definition at line 2719 of file cv.hpp.

MS_PureDisk = 1000735

PureDisk: BrukerPureDisk software.

Definition at line 2722 of file cv.hpp.

MS_QuantAnalysis = 1000736

QuantAnalysis: Bruker software for data analysis.

Definition at line 2725 of file cv.hpp.

MS_spControl = 1000737

spControl: Bruker software for data acquisition.

Definition at line 2728 of file cv.hpp.

MS_TargetAnalysis = 1000738

TargetAnalysis: Bruker TargetAnalysis software.

Definition at line 2731 of file cv.hpp.

MS_WARP_LC = 1000739

WARP-LC: Bruker WARP-LC software.

Definition at line 2734 of file cv.hpp.

MS_parameter_file = 1000740

parameter file: Parameter file used to configure the acquisition of raw data on the instrument.

Definition at line 2737 of file cv.hpp.

MS_Conversion_to_dta = 1000741

Conversion to dta: Conversion to dta format.

Definition at line 2740 of file cv.hpp.

MS_Bioworks_SRF_format = 1000742

Bioworks SRF format: Thermo Finnigan SRF file format.

Definition at line 2743 of file cv.hpp.

MS_TSQ_Quantum_Ultra_AM = 1000743

TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.

Definition at line 2746 of file cv.hpp.

MS_selected_ion_m_z = 1000744
MS_retention_time_alignment = 1000745

retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.

Definition at line 2752 of file cv.hpp.

MS_high_intensity_data_point_removal = 1000746

high intensity data point removal: The removal of very high intensity data points.

Definition at line 2755 of file cv.hpp.

MS_completion_time = 1000747

completion time: The time that a data processing action was finished.

Definition at line 2758 of file cv.hpp.

MS_SSQ_7000 = 1000748

SSQ 7000: ThermoFinnigan SSQ 7000 MS.

Definition at line 2761 of file cv.hpp.

MS_TSQ_7000 = 1000749

TSQ 7000: ThermoFinnigan TSQ 7000 MS.

Definition at line 2764 of file cv.hpp.

MS_TSQ = 1000750

TSQ: ThermoFinnigan TSQ MS.

Definition at line 2767 of file cv.hpp.

MS_TSQ_Quantum_Ultra = 1000751

TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.

Definition at line 2770 of file cv.hpp.

MS_TOPP_software = 1000752

TOPP software: TOPP (The OpenMS proteomics pipeline) software.

Definition at line 2773 of file cv.hpp.

MS_BaselineFilter = 1000753

BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.

Definition at line 2776 of file cv.hpp.

MS_DBExporter = 1000754

DBExporter: Exports data from an OpenMS database to a file.

Definition at line 2779 of file cv.hpp.

MS_DBImporter = 1000755

DBImporter: Imports data to an OpenMS database.

Definition at line 2782 of file cv.hpp.

MS_FileConverter = 1000756

FileConverter: Converts between different MS file formats.

Definition at line 2785 of file cv.hpp.

MS_FileFilter = 1000757

FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.

Definition at line 2788 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_FileMerger = 1000758

FileMerger: Merges several MS files into one file.

Definition at line 2791 of file cv.hpp.

MS_InternalCalibration = 1000759

InternalCalibration: Applies an internal calibration.

Definition at line 2794 of file cv.hpp.

MS_MapAligner_OBSOLETE = 1000760

MapAligner: Corrects retention time distortions between maps.

Definition at line 2797 of file cv.hpp.

MS_MapNormalizer = 1000761

MapNormalizer: Normalizes peak intensities in an MS run.

Definition at line 2800 of file cv.hpp.

MS_NoiseFilter_OBSOLETE = 1000762

NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.

Definition at line 2803 of file cv.hpp.

MS_PeakPicker_OBSOLETE = 1000763

PeakPicker: Finds mass spectrometric peaks in profile mass spectra.

Definition at line 2806 of file cv.hpp.

MS_Resampler = 1000764

Resampler: Transforms an LC/MS map into a resampled map or a png image.

Definition at line 2809 of file cv.hpp.

MS_SpectraFilter_OBSOLETE = 1000765

SpectraFilter: Applies a filter to peak spectra.

Definition at line 2812 of file cv.hpp.

MS_TOFCalibration = 1000766

TOFCalibration: Applies time of flight calibration.

Definition at line 2815 of file cv.hpp.

MS_native_spectrum_identifier_format = 1000767

native spectrum identifier format: Describes how the native spectrum identifiers are formated.

Definition at line 2818 of file cv.hpp.

nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.

Definition at line 2821 of file cv.hpp.

MS_Thermo_nativeID_format = 1000768

Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.

Definition at line 2824 of file cv.hpp.

Referenced by testIDParsing().

MS_Waters_nativeID_format = 1000769

Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.

Definition at line 2827 of file cv.hpp.

MS_WIFF_nativeID_format = 1000770

WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.

Definition at line 2830 of file cv.hpp.

Referenced by testIDParsing().

MS_Bruker_Agilent_YEP_nativeID_format = 1000771

Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.

Definition at line 2833 of file cv.hpp.

Referenced by test(), and testIDParsing().

MS_Bruker_BAF_nativeID_format = 1000772

Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.

Definition at line 2836 of file cv.hpp.

Referenced by testIDParsing().

MS_Bruker_FID_nativeID_format = 1000773

Bruker FID nativeID format: Native format defined by file=xsd:IDREF.

Definition at line 2839 of file cv.hpp.

MS_multiple_peak_list_nativeID_format = 1000774

multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.

Definition at line 2842 of file cv.hpp.

Referenced by testIDParsing().

MS_single_peak_list_nativeID_format = 1000775

single peak list nativeID format: Native format defined by file=xsd:IDREF.

Definition at line 2845 of file cv.hpp.

MS_scan_number_only_nativeID_format = 1000776

scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.

Definition at line 2848 of file cv.hpp.

Referenced by initializeTinyMS1(), initializeTinyMS2(), and testIDParsing().

MS_spectrum_identifier_nativeID_format = 1000777

spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.

Definition at line 2851 of file cv.hpp.

Referenced by testIDParsing().

MS_charge_state_calculation = 1000778

charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.

Definition at line 2854 of file cv.hpp.

MS_below_precursor_intensity_dominance_charge_state_calculation = 1000779

below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z.

Definition at line 2857 of file cv.hpp.

MS_precursor_recalculation = 1000780

precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.

Definition at line 2860 of file cv.hpp.

MS_msPrefix_precursor_recalculation = 1000781

msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.

Definition at line 2863 of file cv.hpp.

MS_Savitzky_Golay_smoothing = 1000782

Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.

Definition at line 2866 of file cv.hpp.

MS_LOWESS_smoothing = 1000783

LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.

Definition at line 2869 of file cv.hpp.

MS_Gaussian_smoothing = 1000784

Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.

Definition at line 2872 of file cv.hpp.

MS_binomial_smoothing = MS_Gaussian_smoothing

binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.

Definition at line 2875 of file cv.hpp.

MS_Weierstrass_transform = MS_Gaussian_smoothing

Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.

Definition at line 2878 of file cv.hpp.

MS_moving_average_smoothing = 1000785

moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.

Definition at line 2881 of file cv.hpp.

MS_box_smoothing = MS_moving_average_smoothing

box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.

Definition at line 2884 of file cv.hpp.

MS_boxcar_smoothing = MS_moving_average_smoothing

boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.

Definition at line 2887 of file cv.hpp.

MS_sliding_average_smoothing = MS_moving_average_smoothing

sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.

Definition at line 2890 of file cv.hpp.

MS_non_standard_data_array = 1000786

non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.

Definition at line 2893 of file cv.hpp.

MS_inclusive_low_intensity_threshold = 1000787

inclusive low intensity threshold: Threshold at or below which some action is taken.

Definition at line 2896 of file cv.hpp.

MS_inclusive_high_intensity_threshold = 1000788

inclusive high intensity threshold: Threshold at or above which some action is taken.

Definition at line 2899 of file cv.hpp.

MS_enhanced_multiply_charged_spectrum = 1000789

enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.

Definition at line 2902 of file cv.hpp.

MS_time_delayed_fragmentation_spectrum = 1000790

time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.

Definition at line 2905 of file cv.hpp.

MS_enhanced_resolution_scan_OBSOLETE = 1000791

enhanced resolution scan: Scan with enhanced resolution.

Definition at line 2908 of file cv.hpp.

MS_isolation_window_attribute = 1000792

isolation window attribute: Isolation window parameter.

Definition at line 2911 of file cv.hpp.

MS_isolation_window_upper_limit_OBSOLETE = 1000793

isolation window upper limit: The highest m/z being isolated in an isolation window.

Definition at line 2914 of file cv.hpp.

MS_isolation_window_lower_limit_OBSOLETE = 1000794

isolation window lower limit: The lowest m/z being isolated in an isolation window.

Definition at line 2917 of file cv.hpp.

MS_no_combination = 1000795

no combination: Use this term if only one scan was recorded or there is no information about scans available.

Definition at line 2920 of file cv.hpp.

Referenced by initializeTinyMGF().

MS_spectrum_title = 1000796

spectrum title: A free-form text title describing a spectrum.

Definition at line 2923 of file cv.hpp.

Referenced by initializeTinyMGF(), test(), and testWrapTitleMaker().

MS_peak_list_scans = 1000797

peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.

Definition at line 2926 of file cv.hpp.

MS_peak_list_raw_scans = 1000798

peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.

Definition at line 2929 of file cv.hpp.

MS_custom_unreleased_software_tool = 1000799

custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.

Definition at line 2932 of file cv.hpp.

MS_mass_resolving_power = 1000800

mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.

Definition at line 2935 of file cv.hpp.

MS_area_peak_picking = 1000801

area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.

Definition at line 2938 of file cv.hpp.

MS_sum_peak_picking = MS_area_peak_picking

sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.

Definition at line 2941 of file cv.hpp.

MS_height_peak_picking = 1000802

height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.

Definition at line 2944 of file cv.hpp.

MS_max_peak_picking = MS_height_peak_picking

max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.

Definition at line 2947 of file cv.hpp.

MS_analyzer_scan_offset = 1000803

analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.

Definition at line 2950 of file cv.hpp.

MS_electromagnetic_radiation_spectrum = 1000804

electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.

Definition at line 2953 of file cv.hpp.

EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.

Definition at line 2956 of file cv.hpp.

MS_emission_spectrum = 1000805

emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.

Definition at line 2959 of file cv.hpp.

MS_absorption_spectrum = 1000806

absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.

Definition at line 2962 of file cv.hpp.

MS_Th_s = 1000807

Th/s: Unit describing the scan rate of a spectrum in Thomson per second.

Definition at line 2965 of file cv.hpp.

MS_chromatogram_attribute = 1000808

chromatogram attribute: Chromatogram properties that are associated with a value.

Definition at line 2968 of file cv.hpp.

MS_chromatogram_title = 1000809

chromatogram title: A free-form text title describing a chromatogram.

Definition at line 2971 of file cv.hpp.

MS_mass_chromatogram = 1000810

mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.

Definition at line 2974 of file cv.hpp.

MS_electromagnetic_radiation_chromatogram = 1000811

electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.

Definition at line 2977 of file cv.hpp.

MS_EMR_radiation_chromatogram = MS_electromagnetic_radiation_chromatogram

EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.

Definition at line 2980 of file cv.hpp.

MS_absorption_chromatogram = 1000812

absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.

Definition at line 2983 of file cv.hpp.

MS_emission_chromatogram = 1000813

emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.

Definition at line 2986 of file cv.hpp.

MS_counts_per_second = 1000814

counts per second: The number of counted events observed per second in one or a group of elements of a detector.

Definition at line 2989 of file cv.hpp.

MS_Bruker_BAF_format = 1000815

Bruker BAF format: Bruker BAF raw file format.

Definition at line 2992 of file cv.hpp.

MS_Bruker_U2_format = 1000816

Bruker U2 format: Bruker HyStar U2 file format.

Definition at line 2995 of file cv.hpp.

MS_HyStar = 1000817

HyStar: Bruker software for hyphenated experiments.

Definition at line 2998 of file cv.hpp.

MS_Acquity_UPLC_PDA = 1000818

Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.

Definition at line 3001 of file cv.hpp.

MS_Acquity_UPLC_FLR = 1000819

Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.

Definition at line 3004 of file cv.hpp.

MS_flow_rate_array = 1000820

flow rate array: A data array of flow rate measurements.

Definition at line 3007 of file cv.hpp.

MS_pressure_array = 1000821

pressure array: A data array of pressure measurements.

Definition at line 3010 of file cv.hpp.

MS_temperature_array = 1000822

temperature array: A data array of temperature measurements.

Definition at line 3013 of file cv.hpp.

MS_Bruker_U2_nativeID_format = 1000823

Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.

Definition at line 3016 of file cv.hpp.

MS_no_nativeID_format = 1000824

no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.

Definition at line 3019 of file cv.hpp.

Referenced by testIDParsing().

MS_Bruker_FID_format = 1000825

Bruker FID format: Bruker FID file format.

Definition at line 3022 of file cv.hpp.

MS_elution_time = 1000826

elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography.

Definition at line 3025 of file cv.hpp.

MS_isolation_window_target_m_z = 1000827

isolation window target m/z: The primary or reference m/z about which the isolation window is defined.

Definition at line 3028 of file cv.hpp.

Referenced by initializeTinyMS2(), test(), test_v3(), testPrecursor(), testProduct(), and verifyPrecursorInfo().

MS_isolation_window_lower_offset = 1000828

isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.

Definition at line 3031 of file cv.hpp.

Referenced by testPrecursor(), and testProduct().

MS_isolation_window_upper_offset = 1000829

isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.

Definition at line 3034 of file cv.hpp.

Referenced by testPrecursor(), and testProduct().

MS_sample_preparation = 1000831

sample preparation: Properties of the preparation steps which took place before the measurement was performed.

Definition at line 3037 of file cv.hpp.

MS_MALDI_matrix_application = 1000832

MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.

Definition at line 3040 of file cv.hpp.

MS_matrix_application_type = 1000833

matrix application type: Describes the technique how the matrix is put on the sample target.

Definition at line 3043 of file cv.hpp.

MS_matrix_solution = 1000834

matrix solution: Describes the chemical solution used as matrix.

Definition at line 3046 of file cv.hpp.

MS_matrix_solution_concentration = 1000835

matrix solution concentration: Concentration of the chemical solution used as matrix.

Definition at line 3049 of file cv.hpp.

MS_dried_droplet_MALDI_matrix_preparation = 1000836

dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.

Definition at line 3052 of file cv.hpp.

MS_printed_MALDI_matrix_preparation = 1000837

printed MALDI matrix preparation: Printed MALDI matrix preparation.

Definition at line 3055 of file cv.hpp.

MS_sprayed_MALDI_matrix_preparation = 1000838

sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.

Definition at line 3058 of file cv.hpp.

MS_precoated_MALDI_sample_plate = 1000839

precoated MALDI sample plate: Precoated MALDI sample plate.

Definition at line 3061 of file cv.hpp.

MS_laser = 1000840

laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.

Definition at line 3064 of file cv.hpp.

MS_laser_attribute = 1000841

laser attribute: Laser properties that are associated with a value.

Definition at line 3067 of file cv.hpp.

MS_laser_type = 1000842

laser type: Type of laser used for desorption purpose.

Definition at line 3070 of file cv.hpp.

MS_wavelength_OBSOLETE = 1000843

wavelength: The distance between two peaks of the emitted laser beam.

Definition at line 3073 of file cv.hpp.

MS_focus_diameter_x = 1000844

focus diameter x: Describes the diameter of the laser beam in x direction.

Definition at line 3076 of file cv.hpp.

MS_focus_diameter_y = 1000845

focus diameter y: Describes the diameter of the laser beam in y direction.

Definition at line 3079 of file cv.hpp.

MS_pulse_energy = 1000846

pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.

Definition at line 3082 of file cv.hpp.

MS_pulse_duration = 1000847

pulse duration: Describes how long the laser beam was emitted from the laser device.

Definition at line 3085 of file cv.hpp.

MS_attenuation = 1000848

attenuation: Describes the reduction of the intensity of the laser beam energy.

Definition at line 3088 of file cv.hpp.

MS_impact_angle = 1000849

impact angle: Describes the angle between the laser beam and the sample target.

Definition at line 3091 of file cv.hpp.

MS_gas_laser = 1000850

gas laser: Laser which is powered by a gaseous medium.

Definition at line 3094 of file cv.hpp.

MS_solid_state_laser = 1000851

solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.

Definition at line 3097 of file cv.hpp.

MS_dye_laser = 1000852

dye-laser: Dye lasers use an organic dye as the gain medium.

Definition at line 3100 of file cv.hpp.

MS_free_electron_laser = 1000853

free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.

Definition at line 3103 of file cv.hpp.

MS_LTQ_XL = 1000854

LTQ XL: Thermo Scientific LTQ XL MS.

Definition at line 3106 of file cv.hpp.

MS_LTQ_Velos = 1000855

LTQ Velos: Thermo Scientific LTQ Velos MS.

Definition at line 3109 of file cv.hpp.

MS_LTQ_Velos_ETD = 1000856

LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.

Definition at line 3112 of file cv.hpp.

MS_run_attribute = 1000857

run attribute: Properties of the described run.

Definition at line 3115 of file cv.hpp.

MS_fraction_identifier = 1000858

fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information.

Definition at line 3118 of file cv.hpp.

MS_molecule = 1000859

molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.

Definition at line 3121 of file cv.hpp.

MS_peptide = 1000860

peptide: A compound of low molecular weight that is composed of two or more amino acids.

Definition at line 3124 of file cv.hpp.

Referenced by testPeptide().

MS_chemical_compound_attribute = 1000861

chemical compound attribute: A describable property of a chemical compound.

Definition at line 3127 of file cv.hpp.

MS_isoelectric_point = 1000862

isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.

Definition at line 3130 of file cv.hpp.

pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.

Definition at line 3133 of file cv.hpp.

MS_predicted_isoelectric_point = 1000863

predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.

Definition at line 3136 of file cv.hpp.

MS_predicted_pI = MS_predicted_isoelectric_point

predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.

Definition at line 3139 of file cv.hpp.

MS_chemical_compound_formula = 1000864

chemical compound formula: A combination of symbols used to express the chemical composition of a compound.

Definition at line 3142 of file cv.hpp.

MS_empirical_formula = 1000865

empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.

Definition at line 3145 of file cv.hpp.

MS_molecular_formula = 1000866

molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.

Definition at line 3148 of file cv.hpp.

MS_structural_formula = 1000867

structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.

Definition at line 3151 of file cv.hpp.

MS_SMILES_string = 1000868

SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.

Definition at line 3154 of file cv.hpp.

MS_collision_gas_pressure = 1000869

collision gas pressure: The gas pressure of the collision gas used for collisional excitation.

Definition at line 3157 of file cv.hpp.

MS_4000_QTRAP_OBSOLETE = 1000870

4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.

Definition at line 3160 of file cv.hpp.

MS_SRM_software = 1000871

SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.

Definition at line 3163 of file cv.hpp.

MS_MaRiMba = 1000872

MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.

Definition at line 3166 of file cv.hpp.

MS_peptide_attribute_calculation_software = 1000873

peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides.

Definition at line 3169 of file cv.hpp.

MS_SSRCalc = 1000874

SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence.

Definition at line 3172 of file cv.hpp.

MS_declustering_potential = 1000875

declustering potential: Potential difference between the orifice and the skimmer in volts.

Definition at line 3175 of file cv.hpp.

MS_cone_voltage = 1000876

cone voltage: Potential difference between the sampling cone/orifice in volts.

Definition at line 3178 of file cv.hpp.

MS_tube_lens_voltage = 1000877

tube lens voltage: Potential difference setting of the tube lens in volts.

Definition at line 3181 of file cv.hpp.

MS_external_reference_identifier = 1000878

external reference identifier: An identifier/accession number to an external reference database.

Definition at line 3184 of file cv.hpp.

MS_PubMed_identifier = 1000879

PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).

Definition at line 3187 of file cv.hpp.

MS_interchannel_delay = 1000880

interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.

Definition at line 3190 of file cv.hpp.

MS_chemical_compound = 1000881

chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.

Definition at line 3193 of file cv.hpp.

MS_protein = 1000882

protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.

Definition at line 3196 of file cv.hpp.

MS_protein_short_name = 1000883

protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).

Definition at line 3199 of file cv.hpp.

MS_protein_attribute = 1000884

protein attribute: An nonphysical attribute describing a specific protein.

Definition at line 3202 of file cv.hpp.

MS_protein_accession = 1000885

protein accession: Accession number for a specific protein in a database.

Definition at line 3205 of file cv.hpp.

MS_protein_name = 1000886

protein name: A long name describing the function of the protein.

Definition at line 3208 of file cv.hpp.

MS_peptide_attribute = 1000887

peptide attribute: A nonphysical attribute that can be used to describe a peptide.

Definition at line 3211 of file cv.hpp.

MS_unmodified_peptide_sequence = 1000888

unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.

Definition at line 3214 of file cv.hpp.

MS_modified_peptide_sequence = 1000889

modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.

Definition at line 3217 of file cv.hpp.

MS_peptide_labeling_state = 1000890

peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.

Definition at line 3220 of file cv.hpp.

MS_heavy_labeled_peptide = 1000891

heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes.

Definition at line 3223 of file cv.hpp.

MS_unlabeled_peptide = 1000892

unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy".

Definition at line 3226 of file cv.hpp.

MS_light_labeled_peptide = MS_unlabeled_peptide

light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy".

Definition at line 3229 of file cv.hpp.

MS_peptide_group_label = 1000893

peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.

Definition at line 3232 of file cv.hpp.

MS_retention_time = 1000894

retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column.

Definition at line 3235 of file cv.hpp.

MS_local_retention_time = 1000895

local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup.

Definition at line 3238 of file cv.hpp.

MS_normalized_retention_time = 1000896

normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup.

Definition at line 3241 of file cv.hpp.

MS_predicted_retention_time = 1000897

predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application.

Definition at line 3244 of file cv.hpp.

MS_standard = 1000898

standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.

Definition at line 3247 of file cv.hpp.

MS_de_facto_standard = 1000899

de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.

Definition at line 3250 of file cv.hpp.

MS_minimum_information_standard = 1000900

minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.

Definition at line 3253 of file cv.hpp.

MS_retention_time_normalization_standard = 1000901

retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.

Definition at line 3256 of file cv.hpp.

MS_H_PINS_retention_time_normalization_standard = 1000902

H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.

Definition at line 3259 of file cv.hpp.

MS_product_ion_series_ordinal = 1000903

product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).

Definition at line 3262 of file cv.hpp.

MS_product_ion_m_z_delta = 1000904

product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.

Definition at line 3265 of file cv.hpp.

MS_percent_of_base_peak_times_100 = 1000905

percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.

Definition at line 3268 of file cv.hpp.

MS_peak_intensity_rank = 1000906

peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.

Definition at line 3271 of file cv.hpp.

MS_peak_targeting_suitability_rank = 1000907

peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.

Definition at line 3274 of file cv.hpp.

MS_transition = 1000908

transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.

Definition at line 3277 of file cv.hpp.

MS_reaction = MS_transition

reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.

Definition at line 3280 of file cv.hpp.

MS_transition_validation_method = 1000909

transition validation method: The strategy used to validate that a transition is effective.

Definition at line 3283 of file cv.hpp.

MS_transition_optimized_on_specified_instrument = 1000910

transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.

Definition at line 3286 of file cv.hpp.

MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument = 1000911

transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.

Definition at line 3289 of file cv.hpp.

MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument = 1000912

transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).

Definition at line 3292 of file cv.hpp.

MS_transition_predicted_by_informatic_analysis = 1000913

transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.

Definition at line 3295 of file cv.hpp.

MS_tab_delimited_text_format = 1000914

tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character.

Definition at line 3298 of file cv.hpp.

MS_retention_time_window_attribute = 1000915

retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.

Definition at line 3301 of file cv.hpp.

MS_retention_time_window_lower_offset = 1000916

retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time.

Definition at line 3304 of file cv.hpp.

MS_retention_time_window_upper_offset = 1000917

retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time.

Definition at line 3307 of file cv.hpp.

MS_target_list = 1000918

target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.

Definition at line 3310 of file cv.hpp.

MS_target_inclusion_exclusion_priority = 1000919

target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.

Definition at line 3313 of file cv.hpp.

MS_includes_supersede_excludes = 1000920

includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.

Definition at line 3316 of file cv.hpp.

MS_excludes_supersede_includes = 1000921

excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.

Definition at line 3319 of file cv.hpp.

MS_Skyline = 1000922

Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington.

Definition at line 3322 of file cv.hpp.

MS_TIQAM = 1000923

TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.

Definition at line 3325 of file cv.hpp.

MS_MaRiMba_OBSOLETE = 1000924

MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.

Definition at line 3328 of file cv.hpp.

MS_ATAQS = 1000925

ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.

Definition at line 3331 of file cv.hpp.

MS_product_interpretation_rank = 1000926

product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.

Definition at line 3334 of file cv.hpp.

MS_ion_injection_time = 1000927

ion injection time: The length of time spent filling an ion trapping device.

Definition at line 3337 of file cv.hpp.

MS_calibration_spectrum = 1000928

calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.

Definition at line 3340 of file cv.hpp.

MS_Shimadzu_Biotech_nativeID_format = 1000929

Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.

Definition at line 3343 of file cv.hpp.

MS_Shimadzu_Biotech_database_entity = 1000930

Shimadzu Biotech database entity: Shimadzu Biotech format.

Definition at line 3346 of file cv.hpp.

MS_QTRAP_5500 = 1000931

QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.

Definition at line 3349 of file cv.hpp.

MS_TripleTOF_5600 = 1000932

TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.

Definition at line 3352 of file cv.hpp.

MS_protein_modifications = 1000933

protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.

Definition at line 3355 of file cv.hpp.

MS_gene_name = 1000934

gene name: Name of the gene from which the protein is translated.

Definition at line 3358 of file cv.hpp.

MS_spectrum_interpretation = 1001000

spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.

Definition at line 3361 of file cv.hpp.

MS_SEQUEST_CleavesAt = 1001005

SEQUEST:CleavesAt:

Definition at line 3364 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_SEQUEST_ViewCV = 1001006

SEQUEST:ViewCV: SEQUEST View Input Parameters.

Definition at line 3367 of file cv.hpp.

MS_SEQUEST_OutputLines = 1001007

SEQUEST:OutputLines: Number of peptide results to show.

Definition at line 3370 of file cv.hpp.

MS_SEQUEST_DescriptionLines = 1001009

SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.

Definition at line 3373 of file cv.hpp.

MS_de_novo_search = 1001010

de novo search: A de novo sequencing search (without database).

Definition at line 3376 of file cv.hpp.

MS_search_database_details = 1001011

search database details: Details about the database searched.

Definition at line 3379 of file cv.hpp.

MS_database_source = 1001012

database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).

Definition at line 3382 of file cv.hpp.

MS_database_name = 1001013

database name: The name of the search database (nr, SwissProt or est_human).

Definition at line 3385 of file cv.hpp.

MS_database_local_file_path_OBSOLETE = 1001014

database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.

Definition at line 3388 of file cv.hpp.

MS_database_original_uri = 1001015

database original uri: URI, from where the search database was originally downloaded.

Definition at line 3391 of file cv.hpp.

MS_database_version_OBSOLETE = 1001016

database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.

Definition at line 3394 of file cv.hpp.

MS_database_release_date_OBSOLETE = 1001017

database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.

Definition at line 3397 of file cv.hpp.

MS_database_type = 1001018

database type: Database containing amino acid or nucleic acid sequences.

Definition at line 3400 of file cv.hpp.

MS_database_filtering = 1001019

database filtering: Was there filtering used on the database.

Definition at line 3403 of file cv.hpp.

Referenced by testFilter().

MS_DB_filter_taxonomy = 1001020

DB filter taxonomy: A taxonomy filter was to the database search.

Definition at line 3406 of file cv.hpp.

Referenced by testFilter(), and testSpectrumIdentificationProtocol().

MS_DB_filter_on_accession_numbers = 1001021

DB filter on accession numbers: Filtering applied specifically by accession number pattern.

Definition at line 3409 of file cv.hpp.

Referenced by testFilter().

MS_DB_MW_filter = 1001022

DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.

Definition at line 3412 of file cv.hpp.

Referenced by testFilter().

MS_DB_PI_filter = 1001023

DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.

Definition at line 3415 of file cv.hpp.

Referenced by testFilter().

MS_translation_frame = 1001024

translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6).

Definition at line 3418 of file cv.hpp.

MS_translation_table = 1001025

translation table: The translation table used to translate the nucleotides to amino acids.

Definition at line 3421 of file cv.hpp.

Referenced by testDatabaseTranslation(), and testFilter().

MS_SEQUEST_NormalizeXCorrValues = 1001026

SEQUEST:NormalizeXCorrValues:

Definition at line 3424 of file cv.hpp.

MS_DB_filter_on_sequence_pattern = 1001027

DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.

Definition at line 3427 of file cv.hpp.

MS_SEQUEST_SequenceHeaderFilter = 1001028

SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.

Definition at line 3430 of file cv.hpp.

MS_number_of_sequences_searched = 1001029

number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.

Definition at line 3433 of file cv.hpp.

MS_number_of_peptide_seqs_compared_to_each_spectrum = 1001030

number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.

Definition at line 3436 of file cv.hpp.

MS_spectral_library_search = 1001031

spectral library search: A search using a library of spectra.

Definition at line 3439 of file cv.hpp.

MS_SEQUEST_SequencePartialFilter = 1001032

SEQUEST:SequencePartialFilter:

Definition at line 3442 of file cv.hpp.

MS_date___time_search_performed_OBSOLETE = 1001035

date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.

Definition at line 3445 of file cv.hpp.

MS_search_time_taken = 1001036

search time taken: The time taken to complete the search in seconds.

Definition at line 3448 of file cv.hpp.

MS_SEQUEST_ShowFragmentIons = 1001037

SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.

Definition at line 3451 of file cv.hpp.

MS_SEQUEST_Consensus = 1001038

SEQUEST:Consensus: Specify depth as value of the CVParam.

Definition at line 3454 of file cv.hpp.

MS_intermediate_analysis_format = 1001040

intermediate analysis format: Type of the source file, the mzIdentML was created from.

Definition at line 3457 of file cv.hpp.

MS_SEQUEST_sortCV = 1001041

SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.

Definition at line 3460 of file cv.hpp.

MS_SEQUEST_LimitTo = 1001042

SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam.

Definition at line 3463 of file cv.hpp.

MS_cleavage_agent_details = 1001044

cleavage agent details: Details of cleavage agent (enzyme).

Definition at line 3466 of file cv.hpp.

MS_cleavage_agent_name = 1001045

cleavage agent name: The name of the cleavage agent.

Definition at line 3469 of file cv.hpp.

MS_SEQUEST_sort_by_dCn = 1001046

SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score.

Definition at line 3472 of file cv.hpp.

MS_SEQUEST_sort_by_dM = 1001047

SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M.

Definition at line 3475 of file cv.hpp.

MS_SEQUEST_sort_by_Ions = 1001048

SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.

Definition at line 3478 of file cv.hpp.

MS_SEQUEST_sort_by_MH_ = 1001049

SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.

Definition at line 3481 of file cv.hpp.

MS_SEQUEST_sort_by_P = 1001050

SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.

Definition at line 3484 of file cv.hpp.

MS_multiple_enzyme_combination_rules_OBSOLETE = 1001051

multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.

Definition at line 3487 of file cv.hpp.

MS_SEQUEST_sort_by_PreviousAminoAcid = 1001052

SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid.

Definition at line 3490 of file cv.hpp.

MS_SEQUEST_sort_by_Ref = 1001053

SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.

Definition at line 3493 of file cv.hpp.

MS_modification_parameters = 1001055

modification parameters: Modification parameters for the search engine run.

Definition at line 3496 of file cv.hpp.

MS_modification_specificity_rule = 1001056

modification specificity rule: The specificity rules for the modifications applied by the search engine.

Definition at line 3499 of file cv.hpp.

MS_tolerance_on_types_OBSOLETE = 1001057

tolerance on types: OBSOLETE: Tolerance on types.

Definition at line 3502 of file cv.hpp.

MS_quality_estimation_by_manual_validation = 1001058

quality estimation by manual validation: The quality estimation was done manually.

Definition at line 3505 of file cv.hpp.

MS_SEQUEST_sort_by_RSp = 1001059

SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide).

Definition at line 3508 of file cv.hpp.

MS_quality_estimation_method_details = 1001060

quality estimation method details: Method for quality estimation (manually or with decoy database).

Definition at line 3511 of file cv.hpp.

MS_neutral_loss_OBSOLETE = 1001061

neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.

Definition at line 3514 of file cv.hpp.

MS_Mascot_MGF_format = 1001062

Mascot MGF format: Mascot MGF file format.

Definition at line 3517 of file cv.hpp.

Referenced by testIdentifyFileFormat().

MS_TODOscoring_model_OBSOLETE = 1001065

TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms.

Definition at line 3520 of file cv.hpp.

MS_ions_series_considered_in_search = 1001066

ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine.

Definition at line 3523 of file cv.hpp.

MS_SEQUEST_sort_by_Sp = 1001068

SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.

Definition at line 3526 of file cv.hpp.

MS_SEQUEST_sort_by_TIC = 1001069

SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.

Definition at line 3529 of file cv.hpp.

MS_SEQUEST_sort_by_Scan = 1001070

SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.

Definition at line 3532 of file cv.hpp.

MS_SEQUEST_sort_by_Sequence = 1001071

SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.

Definition at line 3535 of file cv.hpp.

MS_SEQUEST_sort_by_Sf = 1001072

SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.

Definition at line 3538 of file cv.hpp.

MS_database_type_amino_acid = 1001073

database type amino acid: Database contains amino acid sequences.

Definition at line 3541 of file cv.hpp.

MS_database_type_nucleotide = 1001079

database type nucleotide: Database contains nucleic acid sequences.

Definition at line 3544 of file cv.hpp.

MS_search_type = 1001080

search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).

Definition at line 3547 of file cv.hpp.

MS_pmf_search = 1001081

pmf search: A peptide mass fingerprint search.

Definition at line 3550 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_tag_search = 1001082

tag search: A sequence tag search.

Definition at line 3553 of file cv.hpp.

MS_ms_ms_search = 1001083

ms-ms search: An MS2 search (with fragment ions).

Definition at line 3556 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_database_nr = 1001084

database nr: Non-redundant GenBank sequence database.

Definition at line 3559 of file cv.hpp.

MS_protein_level_identification_attribute = 1001085

protein-level identification attribute: Protein level information.

Definition at line 3562 of file cv.hpp.

MS_SEQUEST_sort_by_XCorr = 1001086

SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.

Definition at line 3565 of file cv.hpp.

MS_SEQUEST_ProcessCV = 1001087

SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.

Definition at line 3568 of file cv.hpp.

MS_protein_description = 1001088

protein description: The protein description line from the sequence entry in the source database FASTA file.

Definition at line 3571 of file cv.hpp.

Referenced by testDBSequence().

MS_molecule_taxonomy = 1001089

molecule taxonomy: The taxonomy of the resultant molecule from the search.

Definition at line 3574 of file cv.hpp.

MS_taxonomy_nomenclature_OBSOLETE = 1001090

taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).

Definition at line 3577 of file cv.hpp.

MS_NoEnzyme_OBSOLETE = 1001091

NoEnzyme:

Definition at line 3580 of file cv.hpp.

Referenced by testCleavageAgents().

MS_peptide_sequence_level_identification_statistic = 1001092

peptide sequence-level identification statistic: Identification confidence metric for a peptide.

Definition at line 3583 of file cv.hpp.

MS_sequence_coverage = 1001093

sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).

Definition at line 3586 of file cv.hpp.

MS_SEQUEST_sort_by_z = 1001094

SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.

Definition at line 3589 of file cv.hpp.

MS_SEQUEST_ProcessAll = 1001095

SEQUEST:ProcessAll:

Definition at line 3592 of file cv.hpp.

MS_SEQUEST_TopPercentMostIntense = 1001096

SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam.

Definition at line 3595 of file cv.hpp.

MS_distinct_peptide_sequences = 1001097

distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.

Definition at line 3598 of file cv.hpp.

MS_confident_distinct_peptide_sequences = 1001098

confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.

Definition at line 3601 of file cv.hpp.

MS_confident_peptide_qualification = 1001099

confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.

Definition at line 3604 of file cv.hpp.

MS_confident_peptide_sequence_number = 1001100

confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.

Definition at line 3607 of file cv.hpp.

MS_protein_group_or_subset_relationship = 1001101

protein group or subset relationship: Protein group or subset relationships.

Definition at line 3610 of file cv.hpp.

MS_SEQUEST_Chromatogram = 1001102

SEQUEST:Chromatogram:

Definition at line 3613 of file cv.hpp.

MS_SEQUEST_InfoAndLog = 1001103

SEQUEST:InfoAndLog:

Definition at line 3616 of file cv.hpp.

MS_database_UniProtKB_Swiss_Prot = 1001104

database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.

Definition at line 3619 of file cv.hpp.

MS_peptide_sequence_level_identification_attribute = 1001105

peptide sequence-level identification attribute: Peptide level information.

Definition at line 3622 of file cv.hpp.

MS_SEQUEST_TopNumber = 1001106

SEQUEST:TopNumber: Specify "number" as value of the CVParam.

Definition at line 3625 of file cv.hpp.

MS_data_stored_in_database = 1001107

data stored in database: Source file for this mzIdentML was a data set in a database.

Definition at line 3628 of file cv.hpp.

MS_param__a_ion = 1001108

param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.

Definition at line 3631 of file cv.hpp.

MS_SEQUEST_CullTo = 1001109

SEQUEST:CullTo: Specify cull string as value of the CVParam.

Definition at line 3634 of file cv.hpp.

MS_SEQUEST_modeCV = 1001110

SEQUEST:modeCV: SEQUEST Mode Input Parameters.

Definition at line 3637 of file cv.hpp.

MS_SEQUEST_Full = 1001111

SEQUEST:Full:

Definition at line 3640 of file cv.hpp.

MS_n_terminal_flanking_residue = 1001112

n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.

Definition at line 3643 of file cv.hpp.

MS_c_terminal_flanking_residue = 1001113

c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.

Definition at line 3646 of file cv.hpp.

MS_retention_time_s__OBSOLETE = 1001114

retention time(s): Retention time of the spectrum from the source file.

Definition at line 3649 of file cv.hpp.

MS_scan_number_s__OBSOLETE = 1001115

scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.

Definition at line 3652 of file cv.hpp.

MS_single_protein_identification_statistic = 1001116

single protein identification statistic: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).

Definition at line 3655 of file cv.hpp.

MS_theoretical_mass = 1001117

theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).

Definition at line 3658 of file cv.hpp.

Referenced by testTraData(), and testTransition().

MS_param__b_ion = 1001118

param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.

Definition at line 3661 of file cv.hpp.

MS_param__c_ion = 1001119

param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.

Definition at line 3664 of file cv.hpp.

MS_SEQUEST_FormatAndLinks = 1001120

SEQUEST:FormatAndLinks:

Definition at line 3667 of file cv.hpp.

MS_number_of_matched_peaks = 1001121

number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.

Definition at line 3670 of file cv.hpp.

MS_ions_series_considered = 1001122

ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb).

Definition at line 3673 of file cv.hpp.

MS_number_of_peaks_used = 1001123

number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.

Definition at line 3676 of file cv.hpp.

MS_number_of_peaks_submitted = 1001124

number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.

Definition at line 3679 of file cv.hpp.

MS_manual_validation = 1001125

manual validation: Result of quality estimation: decision of a manual validation.

Definition at line 3682 of file cv.hpp.

MS_SEQUEST_Fast = 1001126

SEQUEST:Fast:

Definition at line 3685 of file cv.hpp.

MS_peptide_sharing_details = 1001127

peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.

Definition at line 3688 of file cv.hpp.

MS_SEQUEST_selectCV = 1001128

SEQUEST:selectCV: SEQUEST Select Input Parameters.

Definition at line 3691 of file cv.hpp.

MS_quantification_information = 1001129

quantification information: Quantification information.

Definition at line 3694 of file cv.hpp.

MS_peptide_raw_area_OBSOLETE = 1001130

peptide raw area: Peptide raw area.

Definition at line 3697 of file cv.hpp.

MS_error_on_peptide_area = 1001131

error on peptide area: Error on peptide area.

Definition at line 3700 of file cv.hpp.

MS_peptide_ratio = 1001132

peptide ratio: Peptide ratio.

Definition at line 3703 of file cv.hpp.

MS_error_on_peptide_ratio = 1001133

error on peptide ratio: Error on peptide ratio.

Definition at line 3706 of file cv.hpp.

MS_protein_ratio = 1001134

protein ratio: Protein ratio.

Definition at line 3709 of file cv.hpp.

MS_error_on_protein_ratio = 1001135

error on protein ratio: Error on protein ratio.

Definition at line 3712 of file cv.hpp.

MS_p_value__protein_diff_from_1_randomly__OBSOLETE = 1001136

p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).

Definition at line 3715 of file cv.hpp.

MS_absolute_quantity = 1001137

absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.

Definition at line 3718 of file cv.hpp.

MS_error_on_absolute_quantity = 1001138

error on absolute quantity: Error on absolute quantity.

Definition at line 3721 of file cv.hpp.

MS_quantitation_software_name = 1001139

quantitation software name: Quantitation software name.

Definition at line 3724 of file cv.hpp.

MS_quantitation_software_version_OBSOLETE = 1001140

quantitation software version: Quantitation software version.

Definition at line 3727 of file cv.hpp.

MS_intensity_of_precursor_ion = 1001141

intensity of precursor ion: The intensity of the precursor ion.

Definition at line 3730 of file cv.hpp.

MS_database_IPI_human = 1001142

database IPI_human: International Protein Index database for Homo sapiens sequences.

Definition at line 3733 of file cv.hpp.

MS_PSM_level_search_engine_specific_statistic = 1001143

PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.

Definition at line 3736 of file cv.hpp.

MS_SEQUEST_SelectDefault = 1001144

SEQUEST:SelectDefault:

Definition at line 3739 of file cv.hpp.

MS_SEQUEST_SelectAdvancedCV = 1001145

SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.

Definition at line 3742 of file cv.hpp.

MS_param__a_ion_NH3_DEPRECATED = 1001146

param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia.

Definition at line 3745 of file cv.hpp.

MS_protein_ambiguity_group_result_details = 1001147

protein ambiguity group result details:

Definition at line 3748 of file cv.hpp.

MS_param__a_ion_H2O_DEPRECATED = 1001148

param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.

Definition at line 3751 of file cv.hpp.

MS_param__b_ion_NH3_DEPRECATED = 1001149

param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia.

Definition at line 3754 of file cv.hpp.

MS_param__b_ion_H2O_DEPRECATED = 1001150

param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.

Definition at line 3757 of file cv.hpp.

MS_param__y_ion_NH3_DEPRECATED = 1001151

param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia.

Definition at line 3760 of file cv.hpp.

MS_param__y_ion_H2O_DEPRECATED = 1001152

param: y ion-H2O DEPRECATED:

Definition at line 3763 of file cv.hpp.

MS_search_engine_specific_score = 1001153

search engine specific score: Search engine specific scores.

Definition at line 3766 of file cv.hpp.

MS_SEQUEST_probability = 1001154

SEQUEST:probability: The SEQUEST result 'Probability'.

Definition at line 3769 of file cv.hpp.

MS_SEQUEST_xcorr = 1001155

SEQUEST:xcorr: The SEQUEST result 'XCorr'.

Definition at line 3772 of file cv.hpp.

MS_SEQUEST_deltacn = 1001156

SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.

Definition at line 3775 of file cv.hpp.

MS_SEQUEST_sp = 1001157

SEQUEST:sp: The SEQUEST result 'Sp' (protein).

Definition at line 3778 of file cv.hpp.

MS_SEQUEST_Uniq = 1001158

SEQUEST:Uniq:

Definition at line 3781 of file cv.hpp.

MS_SEQUEST_expectation_value = 1001159

SEQUEST:expectation value: The SEQUEST result 'Expectation value'.

Definition at line 3784 of file cv.hpp.

MS_SEQUEST_sf = 1001160

SEQUEST:sf: The SEQUEST result 'Sf'.

Definition at line 3787 of file cv.hpp.

MS_SEQUEST_matched_ions = 1001161

SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.

Definition at line 3790 of file cv.hpp.

MS_SEQUEST_total_ions = 1001162

SEQUEST:total ions: The SEQUEST result 'Total Ions'.

Definition at line 3793 of file cv.hpp.

MS_SEQUEST_consensus_score = 1001163

SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.

Definition at line 3796 of file cv.hpp.

MS_Paragon_unused_protscore = 1001164

Paragon:unused protscore: The Paragon result 'Unused ProtScore'.

Definition at line 3799 of file cv.hpp.

MS_Paragon_total_protscore = 1001165

Paragon:total protscore: The Paragon result 'Total ProtScore'.

Definition at line 3802 of file cv.hpp.

MS_Paragon_score = 1001166

Paragon:score: The Paragon result 'Score'.

Definition at line 3805 of file cv.hpp.

MS_Paragon_confidence = 1001167

Paragon:confidence: The Paragon result 'Confidence'.

Definition at line 3808 of file cv.hpp.

MS_Paragon_expression_error_factor = 1001168

Paragon:expression error factor: The Paragon result 'Expression Error Factor'.

Definition at line 3811 of file cv.hpp.

MS_Paragon_expression_change_p_value = 1001169

Paragon:expression change p-value: The Paragon result 'Expression change P-value'.

Definition at line 3814 of file cv.hpp.

MS_Paragon_contrib = 1001170

Paragon:contrib: The Paragon result 'Contrib'.

Definition at line 3817 of file cv.hpp.

MS_Mascot_score = 1001171
MS_Mascot_expectation_value = 1001172

Mascot:expectation value: The Mascot result 'expectation value'.

Definition at line 3823 of file cv.hpp.

Referenced by testPeptideEvidence(), testProteinAmbiguityGroup(), testProteinDetectionHypothesis(), testProteinDetectionList(), and testSpectrumIdentificationList().

MS_Mascot_matched_ions = 1001173

Mascot:matched ions: The Mascot result 'Matched ions'.

Definition at line 3826 of file cv.hpp.

MS_Mascot_total_ions = 1001174

Mascot:total ions: The Mascot result 'Total ions'.

Definition at line 3829 of file cv.hpp.

MS_peptide_shared_in_multiple_proteins = 1001175

peptide shared in multiple proteins: A peptide matching multiple proteins.

Definition at line 3832 of file cv.hpp.

MS______KR_____P_ = 1001176

(?<=[KR])(?!P): Regular expression for Trypsin.

Definition at line 3835 of file cv.hpp.

Referenced by testOtherRelations().

MS_number_of_molecular_hypothesis_considered = 1001177

number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.

Definition at line 3838 of file cv.hpp.

MS_database_EST = 1001178

database EST: Expressed sequence tag nucleotide sequence database.

Definition at line 3841 of file cv.hpp.

MS_Cleavage_agent_regular_expression = 1001180

Cleavage agent regular expression: Regular expressions for cleavage enzymes.

Definition at line 3844 of file cv.hpp.

MS_search_statistics = 1001184

search statistics: The details of the actual run of the search.

Definition at line 3847 of file cv.hpp.

MS_modification_specificity_peptide_N_term = 1001189

modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide.

Definition at line 3850 of file cv.hpp.

Referenced by test(), and testSearchModification().

MS_modification_specificity_peptide_C_term = 1001190

modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide.

Definition at line 3853 of file cv.hpp.

Referenced by test().

MS_p_value_OBSOLETE = 1001191

p-value: Quality estimation by p-value.

Definition at line 3856 of file cv.hpp.

MS_Expect_value = 1001192

Expect value: Result of quality estimation: Expect value.

Definition at line 3859 of file cv.hpp.

MS_confidence_score = 1001193

confidence score: Result of quality estimation: confidence score.

Definition at line 3862 of file cv.hpp.

MS_quality_estimation_with_decoy_database = 1001194

quality estimation with decoy database: Quality estimation by decoy database.

Definition at line 3865 of file cv.hpp.

MS_decoy_DB_type_reverse = 1001195

decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.

Definition at line 3868 of file cv.hpp.

MS_decoy_DB_type_randomized = 1001196

decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).

Definition at line 3871 of file cv.hpp.

MS_DB_composition_target_decoy = 1001197

DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.

Definition at line 3874 of file cv.hpp.

MS_protein_identification_confidence_metric = 1001198

protein identification confidence metric: Identification confidence metric for a protein.

Definition at line 3877 of file cv.hpp.

MS_Mascot_DAT_format = 1001199

Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.

Definition at line 3880 of file cv.hpp.

Referenced by testSourceFile().

MS_SEQUEST_out_file_format = 1001200

SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.

Definition at line 3883 of file cv.hpp.

MS_DB_MW_filter_maximum = 1001201

DB MW filter maximum: Maximum value of molecular weight filter.

Definition at line 3886 of file cv.hpp.

MS_DB_MW_filter_minimum = 1001202

DB MW filter minimum: Minimum value of molecular weight filter.

Definition at line 3889 of file cv.hpp.

MS_DB_PI_filter_maximum = 1001203

DB PI filter maximum: Maximum value of isoelectric point filter.

Definition at line 3892 of file cv.hpp.

MS_DB_PI_filter_minimum = 1001204

DB PI filter minimum: Minimum value of isoelectric point filter.

Definition at line 3895 of file cv.hpp.

MS_Mascot = 1001207

Mascot: The name of the Mascot search engine.

Definition at line 3898 of file cv.hpp.

Referenced by testAnalysisSoftware().

MS_SEQUEST = 1001208

SEQUEST: The name of the SEQUEST search engine.

Definition at line 3901 of file cv.hpp.

MS_Phenyx = 1001209

Phenyx: The name of the Phenyx search engine.

Definition at line 3904 of file cv.hpp.

MS_mass_type_settings = 1001210

mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).

Definition at line 3907 of file cv.hpp.

MS_parent_mass_type_mono = 1001211

parent mass type mono: Mass type setting for parent mass was monoisotopic.

Definition at line 3910 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_parent_mass_type_average = 1001212

parent mass type average: Mass type setting for parent mass was average isotopic.

Definition at line 3913 of file cv.hpp.

MS_search_result_details_OBSOLETE = 1001213

search result details: OBSOLETE: Scores and global result characteristics.

Definition at line 3916 of file cv.hpp.

MS_protein_level_global_FDR = 1001214

protein-level global FDR: Estimation of the global false discovery rate of proteins.

Definition at line 3919 of file cv.hpp.

MS_SEQUEST_PeptideSp = 1001215

SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).

Definition at line 3922 of file cv.hpp.

MS_SEQUEST_PeptideRankSp = 1001217

SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.

Definition at line 3925 of file cv.hpp.

MS_SEQUEST_PeptideNumber = 1001218

SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).

Definition at line 3928 of file cv.hpp.

MS_SEQUEST_PeptideIdnumber = 1001219

SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).

Definition at line 3931 of file cv.hpp.

MS_frag__y_ion = 1001220

frag: y ion: Fragmentation information, type of product: y ion.

Definition at line 3934 of file cv.hpp.

MS_product_ion_attribute = 1001221

product ion attribute: Fragmentation information like ion types.

Definition at line 3937 of file cv.hpp.

MS_frag__b_ion___H2O = 1001222

frag: b ion - H2O: Fragmentation information, type of product: b ion without water.

Definition at line 3940 of file cv.hpp.

MS_frag__y_ion___H2O = 1001223

frag: y ion - H2O: Fragmentation information, type of product: y ion without water.

Definition at line 3943 of file cv.hpp.

MS_frag__b_ion = 1001224

frag: b ion: Fragmentation information, type of product: b ion.

Definition at line 3946 of file cv.hpp.

Referenced by testProteinDetectionList(), and testSpectraData().

MS_product_ion_m_z = 1001225

product ion m/z: The m/z of the product ion.

Definition at line 3949 of file cv.hpp.

Referenced by testMeasure().

MS_fragment_ion_m_z = MS_product_ion_m_z

fragment ion m/z (product ion m/z): The m/z of the product ion.

Definition at line 3952 of file cv.hpp.

MS_product_ion_intensity = 1001226

product ion intensity: The intensity of a single product ion.

Definition at line 3955 of file cv.hpp.

Referenced by testMeasure().

MS_fragment_ion_intensity = MS_product_ion_intensity

fragment ion intensity (product ion intensity): The intensity of a single product ion.

Definition at line 3958 of file cv.hpp.

MS_product_ion_m_z_error = 1001227

product ion m/z error: The product ion m/z error.

Definition at line 3961 of file cv.hpp.

MS_frag__x_ion = 1001228

frag: x ion: Fragmentation information, type of product: x ion.

Definition at line 3964 of file cv.hpp.

MS_frag__a_ion = 1001229

frag: a ion: Fragmentation information, type of product: a ion.

Definition at line 3967 of file cv.hpp.

Referenced by testIonType().

MS_frag__z_ion = 1001230

frag: z ion: Fragmentation information, type of product: z ion.

Definition at line 3970 of file cv.hpp.

Referenced by testIonType(), testProteinDetectionList(), and testSearchDatabase().

MS_frag__c_ion = 1001231

frag: c ion: Fragmentation information, type of product: c ion.

Definition at line 3973 of file cv.hpp.

MS_frag__b_ion___NH3 = 1001232

frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.

Definition at line 3976 of file cv.hpp.

MS_frag__y_ion___NH3 = 1001233

frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.

Definition at line 3979 of file cv.hpp.

MS_frag__a_ion___H2O = 1001234

frag: a ion - H2O: Fragmentation information, type of product: a ion without water.

Definition at line 3982 of file cv.hpp.

MS_frag__a_ion___NH3 = 1001235

frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.

Definition at line 3985 of file cv.hpp.

MS_frag__d_ion = 1001236

frag: d ion: Fragmentation information, type of product: d ion.

Definition at line 3988 of file cv.hpp.

MS_frag__v_ion = 1001237

frag: v ion: Fragmentation information, type of product: v ion.

Definition at line 3991 of file cv.hpp.

MS_frag__w_ion = 1001238

frag: w ion: Fragmentation information, type of product: w ion.

Definition at line 3994 of file cv.hpp.

MS_frag__immonium_ion = 1001239

frag: immonium ion: Fragmentation information, type of product: immonium ion.

Definition at line 3997 of file cv.hpp.

MS_non_identified_ion = 1001240

non-identified ion: Non-identified ion.

Definition at line 4000 of file cv.hpp.

MS_co_eluting_ion = 1001241

co-eluting ion: Co-eluting ion.

Definition at line 4003 of file cv.hpp.

MS_SEQUEST_out_folder = 1001242

SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.

Definition at line 4006 of file cv.hpp.

MS_SEQUEST_summary = 1001243

SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).

Definition at line 4009 of file cv.hpp.

MS_PerSeptive_PKS_format = 1001245

PerSeptive PKS format: PerSeptive peak list file format.

Definition at line 4012 of file cv.hpp.

MS_SCIEX_API_III_format = 1001246

SCIEX API III format: PE SCIEX peak list file format.

Definition at line 4015 of file cv.hpp.

MS_Bruker_XML_format = 1001247

Bruker XML format: Bruker data exchange XML format.

Definition at line 4018 of file cv.hpp.

MS_search_input_details = 1001249

search input details: Details describing the search input.

Definition at line 4021 of file cv.hpp.

MS_local_FDR = 1001250

local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.

Definition at line 4024 of file cv.hpp.

MS_Trypsin = 1001251

Trypsin: Enzyme trypsin.

Definition at line 4027 of file cv.hpp.

Referenced by testCleavageAgent(), testCleavageAgents(), testEnzyme(), testOtherRelations(), and testPepXMLSpecificity().

MS_DB_source_EBI = 1001252

DB source EBI: Database source EBI.

Definition at line 4030 of file cv.hpp.

MS_DB_source_NCBI = 1001253

DB source NCBI: Database source NCBI.

Definition at line 4033 of file cv.hpp.

MS_DB_source_UniProt = 1001254

DB source UniProt: Database source UniProt.

Definition at line 4036 of file cv.hpp.

MS_fragment_mass_type_average = 1001255

fragment mass type average: Mass type setting for fragment mass was average isotopic.

Definition at line 4039 of file cv.hpp.

MS_fragment_mass_type_mono = 1001256

fragment mass type mono: Mass type setting for fragment mass was monoisotopic.

Definition at line 4042 of file cv.hpp.

MS_param__v_ion = 1001257

param: v ion: Parameter information, type of product: side chain loss v ion.

Definition at line 4045 of file cv.hpp.

MS_param__d_ion = 1001258

param: d ion: Parameter information, type of product: side chain loss d ion.

Definition at line 4048 of file cv.hpp.

MS_param__immonium_ion = 1001259

param: immonium ion: Parameter information, type of product: immonium ion.

Definition at line 4051 of file cv.hpp.

MS_param__w_ion = 1001260

param: w ion: Parameter information, type of product: side chain loss w ion.

Definition at line 4054 of file cv.hpp.

MS_param__x_ion = 1001261

param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.

Definition at line 4057 of file cv.hpp.

MS_param__y_ion = 1001262

param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.

Definition at line 4060 of file cv.hpp.

MS_param__z_ion = 1001263

param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.

Definition at line 4063 of file cv.hpp.

MS_role_type = 1001266

role type: Role of a Person or Organization.

Definition at line 4066 of file cv.hpp.

Referenced by testContactRole(), testProvider(), and testSample().

MS_software_vendor = 1001267

software vendor: Software vendor role.

Definition at line 4069 of file cv.hpp.

Referenced by testAnalysisSoftware(), testContactRole(), and testSample().

MS_programmer = 1001268

programmer: Programmer role.

Definition at line 4072 of file cv.hpp.

Referenced by testSample().

MS_instrument_vendor = 1001269

instrument vendor: Instrument vendor role.

Definition at line 4075 of file cv.hpp.

MS_lab_personnel = 1001270

lab personnel: Lab personnel role.

Definition at line 4078 of file cv.hpp.

MS_researcher = 1001271

researcher: Researcher role.

Definition at line 4081 of file cv.hpp.

MS_____R____P_ = 1001272

(?<=R)(?!P): Regular expression for Arg-C.

Definition at line 4084 of file cv.hpp.

MS_____BD__ = 1001273

(?=[BD]): Regular expression for Asp-N.

Definition at line 4087 of file cv.hpp.

MS_____DE__ = 1001274

(?=[DE]): Regular expression for Asp-N-ambic.

Definition at line 4090 of file cv.hpp.

MS_ProteinScape_SearchEvent = 1001275

ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.

Definition at line 4093 of file cv.hpp.

MS_ProteinScape_Gel = 1001276

ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.

Definition at line 4096 of file cv.hpp.

MS_decoy_DB_accession_regexp = 1001283

decoy DB accession regexp: Specify the regular expression for decoy accession numbers.

Definition at line 4099 of file cv.hpp.

MS_decoy_DB_derived_from_OBSOLETE = 1001284

decoy DB derived from: The name of the database, the search database was derived from.

Definition at line 4102 of file cv.hpp.

MS_database_IPI_mouse = 1001285

database IPI_mouse: International Protein Index database for Mus musculus sequences.

Definition at line 4105 of file cv.hpp.

MS_database_IPI_rat = 1001286

database IPI_rat: International Protein Index database for Rattus norvegicus sequences.

Definition at line 4108 of file cv.hpp.

MS_database_IPI_zebrafish = 1001287

database IPI_zebrafish: International Protein Index database for Danio rerio sequences.

Definition at line 4111 of file cv.hpp.

MS_database_IPI_chicken = 1001288

database IPI_chicken: International Protein Index database for Gallus gallus sequences.

Definition at line 4114 of file cv.hpp.

MS_database_IPI_cow = 1001289

database IPI_cow: International Protein Index database for Bos taurus sequences.

Definition at line 4117 of file cv.hpp.

MS_database_IPI_arabidopsis = 1001290

database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.

Definition at line 4120 of file cv.hpp.

MS_decoy_DB_from_nr_OBSOLETE = 1001291

decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.

Definition at line 4123 of file cv.hpp.

MS_decoy_DB_from_IPI_rat_OBSOLETE = 1001292

decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus.

Definition at line 4126 of file cv.hpp.

MS_decoy_DB_from_IPI_mouse_OBSOLETE = 1001293

decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.

Definition at line 4129 of file cv.hpp.

MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE = 1001294

decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana.

Definition at line 4132 of file cv.hpp.

MS_decoy_DB_from_EST_OBSOLETE = 1001295

decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.

Definition at line 4135 of file cv.hpp.

MS_decoy_DB_from_IPI_zebrafish_OBSOLETE = 1001296

decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio.

Definition at line 4138 of file cv.hpp.

MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE = 1001297

decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.

Definition at line 4141 of file cv.hpp.

MS_decoy_DB_from_IPI_chicken_OBSOLETE = 1001298

decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus.

Definition at line 4144 of file cv.hpp.

MS_decoy_DB_from_IPI_cow_OBSOLETE = 1001299

decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.

Definition at line 4147 of file cv.hpp.

MS_decoy_DB_from_IPI_human_OBSOLETE = 1001300

decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.

Definition at line 4150 of file cv.hpp.

MS_protein_rank = 1001301

protein rank: The rank of the protein in a list sorted by the search engine.

Definition at line 4153 of file cv.hpp.

MS_search_engine_specific_input_parameter = 1001302

search engine specific input parameter: Search engine specific input parameters.

Definition at line 4156 of file cv.hpp.

MS_Arg_C = 1001303

Arg-C: Endoproteinase Arg-C.

Definition at line 4159 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Clostripain = MS_Arg_C

Clostripain (Arg-C): Endoproteinase Arg-C.

Definition at line 4162 of file cv.hpp.

MS_Asp_N = 1001304

Asp-N: Endoproteinase Asp-N.

Definition at line 4165 of file cv.hpp.

Referenced by testBSADigestion(), testCleavageAgents(), testPepXMLSpecificity(), and testSerialize().

MS_Asp_N_ambic = 1001305

Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).

Definition at line 4168 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Chymotrypsin = 1001306

Chymotrypsin: Enzyme chymotrypsin.

Definition at line 4171 of file cv.hpp.

Referenced by testCleavageAgents().

MS_CNBr = 1001307

CNBr: Cyanogen bromide.

Definition at line 4174 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Formic_acid = 1001308

Formic_acid: Formic acid.

Definition at line 4177 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Lys_C = 1001309

Lys-C: Endoproteinase Lys-C.

Definition at line 4180 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Lys_C_P = 1001310

Lys-C/P: Proteinase Lys-C/P.

Definition at line 4183 of file cv.hpp.

Referenced by testCleavageAgents(), and testFind().

MS_PepsinA = 1001311

PepsinA: PepsinA proteinase.

Definition at line 4186 of file cv.hpp.

Referenced by testCleavageAgents().

MS_TrypChymo = 1001312

TrypChymo: Cleavage agent TrypChymo.

Definition at line 4189 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Trypsin_P = 1001313

Trypsin/P: Cleavage agent Trypsin/P.

Definition at line 4192 of file cv.hpp.

Referenced by testBSADigestion(), testCleavageAgent(), testCleavageAgents(), testDigestedPeptides(), testPepXMLSpecificity(), and testSerialize().

MS_V8_DE = 1001314

V8-DE: Cleavage agent V8-DE.

Definition at line 4195 of file cv.hpp.

Referenced by testCleavageAgents().

MS_V8_E = 1001315

V8-E: Cleavage agent V8-E.

Definition at line 4198 of file cv.hpp.

Referenced by testCleavageAgents().

MS_Mascot_SigThreshold = 1001316

Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05).

Definition at line 4201 of file cv.hpp.

Referenced by testProteinDetectionProtocol(), and testSpectrumIdentificationProtocol().

MS_Mascot_MaxProteinHits = 1001317

Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.

Definition at line 4204 of file cv.hpp.

MS_Mascot_ProteinScoringMethod = 1001318

Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.

Definition at line 4207 of file cv.hpp.

MS_Mascot_MinMSMSThreshold = 1001319

Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed.

Definition at line 4210 of file cv.hpp.

MS_Mascot_ShowHomologousProteinsWithSamePeptides = 1001320

Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed.

Definition at line 4213 of file cv.hpp.

MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides = 1001321

Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed.

Definition at line 4216 of file cv.hpp.

MS_Mascot_RequireBoldRed = 1001322

Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits.

Definition at line 4219 of file cv.hpp.

MS_Mascot_UseUnigeneClustering = 1001323

Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use.

Definition at line 4222 of file cv.hpp.

MS_Mascot_IncludeErrorTolerantMatches = 1001324

Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included.

Definition at line 4225 of file cv.hpp.

MS_Mascot_ShowDecoyMatches = 1001325

Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database.

Definition at line 4228 of file cv.hpp.

MS_add_others_OBSOLETE = 1001326

add_others: OBSOLETE.

Definition at line 4231 of file cv.hpp.

MS_OMSSA_evalue = 1001328

OMSSA:evalue: OMSSA E-value.

Definition at line 4234 of file cv.hpp.

MS_OMSSA_pvalue = 1001329

OMSSA:pvalue: OMSSA p-value.

Definition at line 4237 of file cv.hpp.

MS_X_Tandem_expect = 1001330

X!Tandem:expect: The X!Tandem expectation value.

Definition at line 4240 of file cv.hpp.

MS_X_Tandem_hyperscore = 1001331

X!Tandem:hyperscore: The X!Tandem hyperscore.

Definition at line 4243 of file cv.hpp.

MS______FYWL_____P_ = 1001332

(?<=[FYWL])(?!P): Regular expression for Chymotrypsin.

Definition at line 4246 of file cv.hpp.

MS_____M_ = 1001333

(?<=M): Regular expression for CNBr.

Definition at line 4249 of file cv.hpp.

MS______D_______D__ = 1001334

((?<=D))|((?=D)): Regular expression for formic acid.

Definition at line 4252 of file cv.hpp.

MS_____K____P_ = 1001335

(?<=K)(?!P): Regular expression for Lys-C.

Definition at line 4255 of file cv.hpp.

MS_____K_ = 1001336

(?<=K): Regular expression for Lys-C/P.

Definition at line 4258 of file cv.hpp.

MS______FL__ = 1001337

(?<=[FL]): Regular expression for PepsinA.

Definition at line 4261 of file cv.hpp.

MS______FYWLKR_____P_ = 1001338

(?<=[FYWLKR])(?!P): Regular expression for TrypChymo.

Definition at line 4264 of file cv.hpp.

MS______KR__ = 1001339

(?<=[KR]): Regular expression for Trypsin/P.

Definition at line 4267 of file cv.hpp.

MS______BDEZ_____P_ = 1001340

(?<=[BDEZ])(?!P): Regular expression for V8-DE.

Definition at line 4270 of file cv.hpp.

MS______EZ_____P_ = 1001341

(?<=[EZ])(?!P): Regular expression for V8-E.

Definition at line 4273 of file cv.hpp.

MS_database_sequence_details = 1001342

database sequence details: Details about a single database sequence.

Definition at line 4276 of file cv.hpp.

MS_NA_sequence = 1001343

NA sequence: The sequence is a nucleic acid sequence.

Definition at line 4279 of file cv.hpp.

MS_AA_sequence = 1001344

AA sequence: The sequence is a amino acid sequence.

Definition at line 4282 of file cv.hpp.

MS_mass_table_source = 1001345

mass table source: Children of this term specify the source of the mass table used.

Definition at line 4285 of file cv.hpp.

MS_AAIndex_mass_table = 1001346

AAIndex mass table: The masses used in the mass table are taken from AAIndex.

Definition at line 4288 of file cv.hpp.

MS_database_file_formats = 1001347

database file formats: The children of this term define file formats of the sequence database used.

Definition at line 4291 of file cv.hpp.

MS_FASTA_format = 1001348

FASTA format: The sequence database was stored in the FASTA format.

Definition at line 4294 of file cv.hpp.

Referenced by testSearchDatabase().

MS_ASN_1 = 1001349

ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.

Definition at line 4297 of file cv.hpp.

MS_NCBI___p_ = 1001350

NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.

Definition at line 4300 of file cv.hpp.

MS_clustal_aln = 1001351

clustal aln: ClustalW ALN (multiple alignment) format.

Definition at line 4303 of file cv.hpp.

MS_embl_em = 1001352

embl em: EMBL entry format.

Definition at line 4306 of file cv.hpp.

MS_NBRF_PIR = 1001353

NBRF PIR: The NBRF PIR was used as format.

Definition at line 4309 of file cv.hpp.

MS_mass_table_options = 1001354

mass table options: Root node for options for the mass table used.

Definition at line 4312 of file cv.hpp.

MS_peptide_descriptions = 1001355

peptide descriptions: Descriptions of peptides.

Definition at line 4315 of file cv.hpp.

MS_spectrum_descriptions = 1001356

spectrum descriptions: Descriptions of the input spectra.

Definition at line 4318 of file cv.hpp.

MS_spectrum_quality_descriptions = 1001357

spectrum quality descriptions: Description of the quality of the input spectrum.

Definition at line 4321 of file cv.hpp.

MS_msmsEval_quality = 1001358

msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.

Definition at line 4324 of file cv.hpp.

MS_ambiguous_residues = 1001359

ambiguous residues: Children of this term describe ambiguous residues.

Definition at line 4327 of file cv.hpp.

MS_alternate_single_letter_codes = 1001360

alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.

Definition at line 4330 of file cv.hpp.

Referenced by testAmbiguousResidue().

MS_alternate_mass = 1001361

alternate mass: List of masses a non-standard letter code is replaced with.

Definition at line 4333 of file cv.hpp.

MS_number_of_unmatched_peaks = 1001362

number of unmatched peaks: The number of unmatched peaks.

Definition at line 4336 of file cv.hpp.

MS_peptide_unique_to_one_protein = 1001363

peptide unique to one protein: A peptide matching only one.

Definition at line 4339 of file cv.hpp.

MS_peptide_sequence_level_global_FDR = 1001364

peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 4342 of file cv.hpp.

MS_frag__internal_yb_ion = 1001365

frag: internal yb ion: Fragmentation information, type of product: internal yb ion.

Definition at line 4345 of file cv.hpp.

MS_frag__internal_ya_ion = 1001366

frag: internal ya ion: Fragmentation information, type of product: internal ya ion.

Definition at line 4348 of file cv.hpp.

MS_frag__z_1_ion = 1001367

frag: z+1 ion: Fragmentation information, type of product: z+1 ion.

Definition at line 4351 of file cv.hpp.

MS_frag__z_2_ion = 1001368

frag: z+2 ion: Fragmentation information, type of product: z+2 ion.

Definition at line 4354 of file cv.hpp.

MS_text_format = 1001369

text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS2) search.

Definition at line 4357 of file cv.hpp.

MS_Mascot_homology_threshold = 1001370

Mascot:homology threshold: The Mascot result 'homology threshold'.

Definition at line 4360 of file cv.hpp.

MS_Mascot_identity_threshold = 1001371

Mascot:identity threshold: The Mascot result 'identity threshold'.

Definition at line 4363 of file cv.hpp.

MS_SEQUEST_Sequences = 1001372

SEQUEST:Sequences:

Definition at line 4366 of file cv.hpp.

MS_SEQUEST_TIC = 1001373

SEQUEST:TIC: SEQUEST total ion current.

Definition at line 4369 of file cv.hpp.

MS_SEQUEST_Sum = 1001374

SEQUEST:Sum:

Definition at line 4372 of file cv.hpp.

MS_Phenyx_Instrument_Type = 1001375

Phenyx:Instrument Type: The instrument type parameter value in Phenyx.

Definition at line 4375 of file cv.hpp.

MS_Phenyx_Scoring_Model = 1001376

Phenyx:Scoring Model: The selected scoring model in Phenyx.

Definition at line 4378 of file cv.hpp.

MS_Phenyx_Default_Parent_Charge = 1001377

Phenyx:Default Parent Charge: The default parent charge value in Phenyx.

Definition at line 4381 of file cv.hpp.

MS_Phenyx_Trust_Parent_Charge = 1001378

Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct.

Definition at line 4384 of file cv.hpp.

MS_Phenyx_Turbo = 1001379

Phenyx:Turbo: The turbo mode parameter in Phenyx.

Definition at line 4387 of file cv.hpp.

MS_Phenyx_Turbo_ErrorTol = 1001380

Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx.

Definition at line 4390 of file cv.hpp.

MS_Phenyx_Turbo_Coverage = 1001381

Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.

Definition at line 4393 of file cv.hpp.

MS_Phenyx_Turbo_Series = 1001382

Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.

Definition at line 4396 of file cv.hpp.

MS_Phenyx_MinPepLength = 1001383

Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx.

Definition at line 4399 of file cv.hpp.

MS_Phenyx_MinPepzscore = 1001384

Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx.

Definition at line 4402 of file cv.hpp.

MS_Phenyx_MaxPepPvalue = 1001385

Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx.

Definition at line 4405 of file cv.hpp.

MS_Phenyx_AC_Score = 1001386

Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx.

Definition at line 4408 of file cv.hpp.

MS_Phenyx_Conflict_Resolution = 1001387

Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used.

Definition at line 4411 of file cv.hpp.

MS_Phenyx_AC = 1001388

Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.

Definition at line 4414 of file cv.hpp.

MS_Phenyx_ID = 1001389

Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.

Definition at line 4417 of file cv.hpp.

MS_Phenyx_Score = 1001390

Phenyx:Score: The protein score of a protein match in Phenyx.

Definition at line 4420 of file cv.hpp.

MS_Phenyx_Peptides1 = 1001391

Phenyx:Peptides1: First number of phenyx result "#Peptides".

Definition at line 4423 of file cv.hpp.

MS_Phenyx_Peptides2 = 1001392

Phenyx:Peptides2: Second number of phenyx result "#Peptides".

Definition at line 4426 of file cv.hpp.

MS_Phenyx_Auto = 1001393

Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.

Definition at line 4429 of file cv.hpp.

MS_Phenyx_User = 1001394

Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.

Definition at line 4432 of file cv.hpp.

MS_Phenyx_Pepzscore = 1001395

Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.

Definition at line 4435 of file cv.hpp.

MS_Phenyx_PepPvalue = 1001396

Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.

Definition at line 4438 of file cv.hpp.

MS_Phenyx_NumberOfMC = 1001397

Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.

Definition at line 4441 of file cv.hpp.

MS_Phenyx_Modif = 1001398

Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx.

Definition at line 4444 of file cv.hpp.

MS_OMSSA_csv_format = 1001399

OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.

Definition at line 4447 of file cv.hpp.

MS_OMSSA_xml_format = 1001400

OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.

Definition at line 4450 of file cv.hpp.

MS_X_Tandem_xml_format = 1001401

X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.

Definition at line 4453 of file cv.hpp.

MS_spectrum_identification_result_details = 1001405

spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.

Definition at line 4456 of file cv.hpp.

MS_param__internal_yb_ion = 1001406

param: internal yb ion: Parameter information, type of product: internal yb ion.

Definition at line 4459 of file cv.hpp.

MS_param__internal_ya_ion = 1001407

param: internal ya ion: Parameter information, type of product: internal ya ion.

Definition at line 4462 of file cv.hpp.

MS_param__z_1_ion = 1001408

param: z+1 ion: Parameter information, type of product: z+1 ion.

Definition at line 4465 of file cv.hpp.

MS_param__z_2_ion = 1001409

param: z+2 ion: Parameter information, type of product: z+2 ion.

Definition at line 4468 of file cv.hpp.

MS_translation_start_codons = 1001410

translation start codons: The translation start codons used to translate the nucleotides to amino acids.

Definition at line 4471 of file cv.hpp.

MS_search_tolerance_specification = 1001411

search tolerance specification: Specification of the search tolerance.

Definition at line 4474 of file cv.hpp.

MS_search_tolerance_plus_value = 1001412

search tolerance plus value:

Definition at line 4477 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_search_tolerance_minus_value = 1001413

search tolerance minus value:

Definition at line 4480 of file cv.hpp.

Referenced by testSpectrumIdentificationProtocol().

MS_MGF_scans_OBSOLETE = 1001414

MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.

Definition at line 4483 of file cv.hpp.

MS_MGF_raw_scans_OBSOLETE = 1001415

MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.

Definition at line 4486 of file cv.hpp.

MS_spectrum_title_OBSOLETE = 1001416

spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.

Definition at line 4489 of file cv.hpp.

MS_SpectraST_dot = 1001417

SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.

Definition at line 4492 of file cv.hpp.

MS_SpectraST_dot_bias = 1001418

SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.

Definition at line 4495 of file cv.hpp.

MS_SpectraST_discriminant_score_F = 1001419

SpectraST:discriminant score F: SpectraST spectrum score.

Definition at line 4498 of file cv.hpp.

MS_SpectraST_delta = 1001420

SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.

Definition at line 4501 of file cv.hpp.

MS_pepXML_format = 1001421

pepXML format: Source file for this mzIdentML was in a pepXML file format.

Definition at line 4504 of file cv.hpp.

MS_protXML_format = 1001422

protXML format: Source file for this mzIdentML was in protXML file format.

Definition at line 4507 of file cv.hpp.

MS_translation_table_description = 1001423

translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.

Definition at line 4510 of file cv.hpp.

Referenced by testDatabaseTranslation().

MS_ProteinExtractor_Methodname = 1001424

ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.

Definition at line 4513 of file cv.hpp.

MS_ProteinExtractor_GenerateNonRedundant = 1001425

ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated.

Definition at line 4516 of file cv.hpp.

MS_ProteinExtractor_IncludeIdentified = 1001426

ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.

Definition at line 4519 of file cv.hpp.

MS_ProteinExtractor_MaxNumberOfProteins = 1001427

ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.

Definition at line 4522 of file cv.hpp.

MS_ProteinExtractor_MaxProteinMass = 1001428

ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.

Definition at line 4525 of file cv.hpp.

MS_ProteinExtractor_MinNumberOfPeptides = 1001429

ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.

Definition at line 4528 of file cv.hpp.

MS_ProteinExtractor_UseMascot = 1001430

ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score.

Definition at line 4531 of file cv.hpp.

MS_ProteinExtractor_MascotPeptideScoreThreshold = 1001431

ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score.

Definition at line 4534 of file cv.hpp.

MS_ProteinExtractor_MascotUniqueScore = 1001432

ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation.

Definition at line 4537 of file cv.hpp.

MS_ProteinExtractor_MascotUseIdentityScore = 1001433

ProteinExtractor:MascotUseIdentityScore:

Definition at line 4540 of file cv.hpp.

MS_ProteinExtractor_MascotWeighting = 1001434

ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.

Definition at line 4543 of file cv.hpp.

MS_ProteinExtractor_UseSequest = 1001435

ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score.

Definition at line 4546 of file cv.hpp.

MS_ProteinExtractor_SequestPeptideScoreThreshold = 1001436

ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score.

Definition at line 4549 of file cv.hpp.

MS_ProteinExtractor_SequestUniqueScore = 1001437

ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation.

Definition at line 4552 of file cv.hpp.

MS_ProteinExtractor_SequestWeighting = 1001438

ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.

Definition at line 4555 of file cv.hpp.

MS_ProteinExtractor_UseProteinSolver = 1001439

ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score.

Definition at line 4558 of file cv.hpp.

MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold = 1001440

ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score.

Definition at line 4561 of file cv.hpp.

MS_ProteinExtractor_ProteinSolverUniqueScore = 1001441

ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation.

Definition at line 4564 of file cv.hpp.

MS_ProteinExtractor_ProteinSolverWeighting = 1001442

ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.

Definition at line 4567 of file cv.hpp.

MS_ProteinExtractor_UsePhenyx = 1001443

ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score.

Definition at line 4570 of file cv.hpp.

MS_ProteinExtractor_PhenyxPeptideScoreThreshold = 1001444

ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score.

Definition at line 4573 of file cv.hpp.

MS_ProteinExtractor_PhenyxUniqueScore = 1001445

ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation.

Definition at line 4576 of file cv.hpp.

MS_ProteinExtractor_PhenyxWeighting = 1001446

ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.

Definition at line 4579 of file cv.hpp.

MS_prot_FDR_threshold = 1001447

prot:FDR threshold: False-discovery rate threshold for proteins.

Definition at line 4582 of file cv.hpp.

MS_pep_FDR_threshold = 1001448

pep:FDR threshold: False-discovery rate threshold for peptides.

Definition at line 4585 of file cv.hpp.

MS_OMSSA_e_value_threshold = 1001449

OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.

Definition at line 4588 of file cv.hpp.

MS_decoy_DB_details = 1001450

decoy DB details: Details of decoy generation and database structure.

Definition at line 4591 of file cv.hpp.

MS_decoy_DB_generation_algorithm = 1001451

decoy DB generation algorithm: Name of algorithm used for decoy generation.

Definition at line 4594 of file cv.hpp.

MS_decoy_DB_type_shuffle = 1001452

decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.

Definition at line 4597 of file cv.hpp.

MS_DB_composition_only_decoy = 1001453

DB composition only decoy: Decoy database composition: database contains only decoy entries.

Definition at line 4600 of file cv.hpp.

MS_quality_estimation_with_implicite_decoy_sequences = 1001454

quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).

Definition at line 4603 of file cv.hpp.

MS_acquisition_software = 1001455

acquisition software: Acquisition software.

Definition at line 4606 of file cv.hpp.

MS_analysis_software = 1001456

analysis software: Analysis software.

Definition at line 4609 of file cv.hpp.

MS_data_processing_software = 1001457

data processing software: Data processing software.

Definition at line 4612 of file cv.hpp.

MS_spectrum_generation_information = 1001458

spectrum generation information: Vocabularies describing the spectrum generation information.

Definition at line 4615 of file cv.hpp.

MS_file_format = 1001459

file format: Format of data files.

Definition at line 4618 of file cv.hpp.

MS_unknown_modification = 1001460

unknown modification: This term should be given if the modification was unknown.

Definition at line 4621 of file cv.hpp.

MS_greylag = 1001461

greylag: Greylag identification software.

Definition at line 4624 of file cv.hpp.

MS_PEFF_format = 1001462

PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.

Definition at line 4627 of file cv.hpp.

MS_Phenyx_XML_format = 1001463

Phenyx XML format: Phenyx open XML file format.

Definition at line 4630 of file cv.hpp.

MS_DTASelect_format = 1001464

DTASelect format: DTASelect file format.

Definition at line 4633 of file cv.hpp.

MS_MS2_format = 1001466

MS2 format: MS2 file format for MS2 spectral data.

Definition at line 4636 of file cv.hpp.

Referenced by initializeTinyMS1(), initializeTinyMS2(), and testIdentifyFileFormat().

MS_taxonomy__NCBI_TaxID = 1001467

taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.

Definition at line 4639 of file cv.hpp.

MS_taxonomy__common_name = 1001468

taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.

Definition at line 4642 of file cv.hpp.

MS_taxonomy__scientific_name = 1001469

taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.

Definition at line 4645 of file cv.hpp.

MS_taxonomy__Swiss_Prot_ID = 1001470

taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.

Definition at line 4648 of file cv.hpp.

MS_peptide_modification_details = 1001471

peptide modification details: The children of this term can be used to describe modifications.

Definition at line 4651 of file cv.hpp.

MS_selected_ion_monitoring_chromatogram = 1001472

selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.

Definition at line 4654 of file cv.hpp.

SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.

Definition at line 4657 of file cv.hpp.

MS_selected_reaction_monitoring_chromatogram = 1001473

selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.

Definition at line 4660 of file cv.hpp.

SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.

Definition at line 4663 of file cv.hpp.

MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE = 1001474

consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.

Definition at line 4666 of file cv.hpp.

CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.

Definition at line 4669 of file cv.hpp.

MS_OMSSA = 1001475

OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.

Definition at line 4672 of file cv.hpp.

MS_X_Tandem = 1001476

X!Tandem: X!Tandem was used to analyze the spectra.

Definition at line 4675 of file cv.hpp.

MS_SpectraST = 1001477

SpectraST: SpectraST was used to analyze the spectra.

Definition at line 4678 of file cv.hpp.

MS_Mascot_Parser = 1001478

Mascot Parser: Mascot Parser was used to analyze the spectra.

Definition at line 4681 of file cv.hpp.

MS_null_terminated_ASCII_string = 1001479

null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.

Definition at line 4684 of file cv.hpp.

MS_SCIEX_TOF_TOF_nativeID_format = 1001480

SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.

Definition at line 4687 of file cv.hpp.

MS_SCIEX_TOF_TOF_database = 1001481

SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.

Definition at line 4690 of file cv.hpp.

MS_5800_TOF_TOF = 1001482

5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.

Definition at line 4693 of file cv.hpp.

MS_SCIEX_TOF_TOF_Series_Explorer_Software = 1001483

SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.

Definition at line 4696 of file cv.hpp.

MS_intensity_normalization = 1001484

intensity normalization: Normalization of data point intensities.

Definition at line 4699 of file cv.hpp.

MS_m_z_calibration = 1001485

m/z calibration: Calibration of data point m/z positions.

Definition at line 4702 of file cv.hpp.

MS_data_filtering = 1001486

data filtering: Filtering out part of the data.

Definition at line 4705 of file cv.hpp.

MS_ProteinExtractor = 1001487

ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.

Definition at line 4708 of file cv.hpp.

MS_Mascot_Distiller = 1001488

Mascot Distiller: Mascot Distiller.

Definition at line 4711 of file cv.hpp.

MS_Mascot_Integra = 1001489

Mascot Integra: Mascot Integra.

Definition at line 4714 of file cv.hpp.

MS_Percolator = 1001490

Percolator: Percolator.

Definition at line 4717 of file cv.hpp.

MS_percolator_Q_value = 1001491

percolator:Q value: Percolator:Q value.

Definition at line 4720 of file cv.hpp.

MS_percolator_score = 1001492

percolator:score: Percolator:score.

Definition at line 4723 of file cv.hpp.

MS_percolator_PEP = 1001493

percolator:PEP: Posterior error probability.

Definition at line 4726 of file cv.hpp.

MS_no_threshold = 1001494

no threshold: In case no threshold was used.

Definition at line 4729 of file cv.hpp.

MS_ProteinScape_SearchResultId = 1001495

ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.

Definition at line 4732 of file cv.hpp.

MS_ProteinScape_SearchEventId = 1001496

ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.

Definition at line 4735 of file cv.hpp.

MS_ProteinScape_ProfoundProbability = 1001497

ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.

Definition at line 4738 of file cv.hpp.

MS_Profound_z_value = 1001498

Profound:z value: The Profound z value.

Definition at line 4741 of file cv.hpp.

MS_Profound_Cluster = 1001499

Profound:Cluster: The Profound cluster score.

Definition at line 4744 of file cv.hpp.

MS_Profound_ClusterRank = 1001500

Profound:ClusterRank: The Profound cluster rank.

Definition at line 4747 of file cv.hpp.

MS_MSFit_Mowse_score = 1001501

MSFit:Mowse score: The MSFit Mowse score.

Definition at line 4750 of file cv.hpp.

MS_Sonar_Score = 1001502

Sonar:Score: The Sonar score.

Definition at line 4753 of file cv.hpp.

MS_ProteinScape_PFFSolverExp = 1001503

ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.

Definition at line 4756 of file cv.hpp.

MS_ProteinScape_PFFSolverScore = 1001504

ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.

Definition at line 4759 of file cv.hpp.

MS_ProteinScape_IntensityCoverage = 1001505

ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.

Definition at line 4762 of file cv.hpp.

MS_ProteinScape_SequestMetaScore = 1001506

ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores.

Definition at line 4765 of file cv.hpp.

MS_ProteinExtractor_Score = 1001507

ProteinExtractor:Score: The score calculated by ProteinExtractor.

Definition at line 4768 of file cv.hpp.

MS_Agilent_MassHunter_nativeID_format = 1001508

Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.

Definition at line 4771 of file cv.hpp.

MS_Agilent_MassHunter_format = 1001509

Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.

Definition at line 4774 of file cv.hpp.

MS_TSQ_Vantage = 1001510

TSQ Vantage: TSQ Vantage.

Definition at line 4777 of file cv.hpp.

MS_Sequence_database_filter_types = 1001511

Sequence database filter types: Filter types which are used to filter a sequence database.

Definition at line 4780 of file cv.hpp.

MS_Sequence_database_filters = 1001512

Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.

Definition at line 4783 of file cv.hpp.

MS_DB_sequence_filter_pattern = 1001513

DB sequence filter pattern: DB sequence filter pattern.

Definition at line 4786 of file cv.hpp.

MS_DB_accession_filter_string = 1001514

DB accession filter string: DB accession filter string.

Definition at line 4789 of file cv.hpp.

MS_frag__c_ion___H2O = 1001515

frag: c ion - H2O: Fragmentation information, type of product: c ion without water.

Definition at line 4792 of file cv.hpp.

MS_frag__c_ion___NH3 = 1001516

frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.

Definition at line 4795 of file cv.hpp.

MS_frag__z_ion___H2O = 1001517

frag: z ion - H2O: Fragmentation information, type of product: z ion without water.

Definition at line 4798 of file cv.hpp.

MS_frag__z_ion___NH3 = 1001518

frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.

Definition at line 4801 of file cv.hpp.

MS_frag__x_ion___H2O = 1001519

frag: x ion - H2O: Fragmentation information, type of product: x ion without water.

Definition at line 4804 of file cv.hpp.

MS_frag__x_ion___NH3 = 1001520

frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.

Definition at line 4807 of file cv.hpp.

MS_frag__precursor_ion___H2O = 1001521

frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.

Definition at line 4810 of file cv.hpp.

MS_frag__precursor_ion___NH3 = 1001522

frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.

Definition at line 4813 of file cv.hpp.

MS_frag__precursor_ion = 1001523

frag: precursor ion: Fragmentation information, type of product: precursor ion.

Definition at line 4816 of file cv.hpp.

MS_fragment_neutral_loss = 1001524

fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.

Definition at line 4819 of file cv.hpp.

MS_precursor_neutral_loss = 1001525

precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.

Definition at line 4822 of file cv.hpp.

MS_spectrum_from_database_integer_nativeID_format = 1001526

spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.

Definition at line 4825 of file cv.hpp.

MS_Proteinscape_spectra = 1001527

Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.

Definition at line 4828 of file cv.hpp.

MS_Mascot_query_number = 1001528

Mascot query number: Native format defined by query=xsd:nonNegativeInteger.

Definition at line 4831 of file cv.hpp.

MS_spectra_data_details = 1001529

spectra data details: Child-terms contain information to map the results back to spectra.

Definition at line 4834 of file cv.hpp.

MS_mzML_unique_identifier = 1001530

mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.

Definition at line 4837 of file cv.hpp.

MS_spectrum_from_ProteinScape_database_nativeID_format = 1001531

spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.

Definition at line 4840 of file cv.hpp.

MS_spectrum_from_database_string_nativeID_format = 1001532

spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.

Definition at line 4843 of file cv.hpp.

MS_Bruker_Daltonics_esquire_series = 1001533

Bruker Daltonics esquire series: Bruker Daltonics' esquire series.

Definition at line 4846 of file cv.hpp.

MS_Bruker_Daltonics_flex_series = 1001534

Bruker Daltonics flex series: Bruker Daltonics' flex series.

Definition at line 4849 of file cv.hpp.

MS_Bruker_Daltonics_BioTOF_series = 1001535

Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.

Definition at line 4852 of file cv.hpp.

MS_Bruker_Daltonics_micrOTOF_series = 1001536

Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.

Definition at line 4855 of file cv.hpp.

MS_BioTOF = 1001537

BioTOF: Bruker Daltonics' BioTOF: ESI TOF.

Definition at line 4858 of file cv.hpp.

MS_BioTOF_III = 1001538

BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.

Definition at line 4861 of file cv.hpp.

MS_UltroTOF_Q = 1001539

UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).

Definition at line 4864 of file cv.hpp.

MS_micrOTOF_II = 1001540

micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.

Definition at line 4867 of file cv.hpp.

MS_maXis = 1001541

maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.

Definition at line 4870 of file cv.hpp.

MS_amaZon_ETD = 1001542

amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.

Definition at line 4873 of file cv.hpp.

MS_microflex_LRF = 1001543

microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.

Definition at line 4876 of file cv.hpp.

MS_ultrafleXtreme = 1001544

ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.

Definition at line 4879 of file cv.hpp.

MS_Bruker_Daltonics_amaZon_series = 1001545

Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.

Definition at line 4882 of file cv.hpp.

MS_amaZon_X = 1001546

amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.

Definition at line 4885 of file cv.hpp.

MS_Bruker_Daltonics_maXis_series = 1001547

Bruker Daltonics maXis series: Bruker Daltonics' maXis series.

Definition at line 4888 of file cv.hpp.

MS_Bruker_Daltonics_solarix_series = 1001548

Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.

Definition at line 4891 of file cv.hpp.

MS_solariX = 1001549

solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.

Definition at line 4894 of file cv.hpp.

MS_microflex_II = 1001550

microflex II: Bruker Daltonics' microflex II: MALDI TOF.

Definition at line 4897 of file cv.hpp.

MS_autoflex_II_TOF_TOF = 1001553

autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.

Definition at line 4900 of file cv.hpp.

MS_autoflex_III_TOF_TOF_smartbeam = 1001554

autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.

Definition at line 4903 of file cv.hpp.

MS_autoflex = 1001555

autoflex: Bruker Daltonics' autoflex: MALDI TOF.

Definition at line 4906 of file cv.hpp.

MS_Bruker_Daltonics_apex_series = 1001556

Bruker Daltonics apex series: Bruker Daltonics' apex series.

Definition at line 4909 of file cv.hpp.

MS_Shimadzu_Corporation_software = 1001557

Shimadzu Corporation software: Shimadzu Corporation software.

Definition at line 4912 of file cv.hpp.

MS_MALDI_Solutions = 1001558

MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.

Definition at line 4915 of file cv.hpp.

MS_SCIEX_TOF_TOF_T2D_nativeID_format = 1001559

SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.

Definition at line 4918 of file cv.hpp.

MS_SCIEX_TOF_TOF_T2D_format = 1001560

SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.

Definition at line 4921 of file cv.hpp.

MS_Scaffold = 1001561

Scaffold: Scaffold analysis software.

Definition at line 4924 of file cv.hpp.

MS_Scaffold_nativeID_format = 1001562

Scaffold nativeID format: Scaffold native ID format.

Definition at line 4927 of file cv.hpp.

MS_SEQUEST_SQT_format = 1001563

SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.

Definition at line 4930 of file cv.hpp.

MS_Discoverer_MSF_format = 1001564

Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.

Definition at line 4933 of file cv.hpp.

MS_IdentityE_XML_format = 1001565

IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.

Definition at line 4936 of file cv.hpp.

MS_ProteinLynx_XML_format = 1001566

ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.

Definition at line 4939 of file cv.hpp.

MS_SpectrumMill_directories = 1001567

SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.

Definition at line 4942 of file cv.hpp.

MS_Scaffold_Peptide_Probability = 1001568

Scaffold:Peptide Probability: Scaffold peptide probability score.

Definition at line 4945 of file cv.hpp.

MS_IdentityE_Score = 1001569

IdentityE Score: Waters IdentityE peptide score.

Definition at line 4948 of file cv.hpp.

MS_ProteinLynx_Log_Likelihood = 1001570

ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.

Definition at line 4951 of file cv.hpp.

MS_ProteinLynx_Ladder_Score = 1001571

ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.

Definition at line 4954 of file cv.hpp.

MS_SpectrumMill_Score = 1001572

SpectrumMill:Score: Spectrum mill peptide score.

Definition at line 4957 of file cv.hpp.

MS_SpectrumMill_SPI = 1001573

SpectrumMill:SPI: SpectrumMill SPI score (%).

Definition at line 4960 of file cv.hpp.

MS_report_only_spectra_assigned_to_identified_proteins = 1001574

report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins.

Definition at line 4963 of file cv.hpp.

MS_Scaffold__Minimum_Peptide_Count = 1001575

Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.

Definition at line 4966 of file cv.hpp.

MS_Scaffold__Minimum_Protein_Probability = 1001576

Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.

Definition at line 4969 of file cv.hpp.

MS_Scaffold__Minimum_Peptide_Probability = 1001577

Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.

Definition at line 4972 of file cv.hpp.

MS_minimum_number_of_enzymatic_termini = 1001578

minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted.

Definition at line 4975 of file cv.hpp.

MS_Scaffold_Protein_Probability = 1001579

Scaffold:Protein Probability: Scaffold protein probability score.

Definition at line 4978 of file cv.hpp.

MS_SpectrumMill_Discriminant_Score = 1001580

SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.

Definition at line 4981 of file cv.hpp.

MS_FAIMS_compensation_voltage = 1001581

FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.

Definition at line 4984 of file cv.hpp.

FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.

Definition at line 4987 of file cv.hpp.

MS_XCMS = 1001582

XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.

Definition at line 4990 of file cv.hpp.

MS_MaxQuant = 1001583

MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.

Definition at line 4993 of file cv.hpp.

MS_combined_pmf___ms_ms_search = 1001584

combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF).

Definition at line 4996 of file cv.hpp.

MS_MyriMatch = 1001585

MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.

Definition at line 4999 of file cv.hpp.

MS_DirecTag = 1001586

DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.

Definition at line 5002 of file cv.hpp.

MS_TagRecon = 1001587

TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.

Definition at line 5005 of file cv.hpp.

MS_Pepitome = 1001588

Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.

Definition at line 5008 of file cv.hpp.

MS_MyriMatch_MVH = 1001589

MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.

Definition at line 5011 of file cv.hpp.

MS_Pepitome_MVH = MS_MyriMatch_MVH

Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.

Definition at line 5014 of file cv.hpp.

MS_TagRecon_MVH = MS_MyriMatch_MVH

TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.

Definition at line 5017 of file cv.hpp.

MS_MyriMatch_mzFidelity = 1001590

MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.

Definition at line 5020 of file cv.hpp.

MS_Pepitome_mzFidelity = MS_MyriMatch_mzFidelity

Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.

Definition at line 5023 of file cv.hpp.

MS_TagRecon_mzFidelity = MS_MyriMatch_mzFidelity

TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.

Definition at line 5026 of file cv.hpp.

MS_anchor_protein = 1001591

anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.

Definition at line 5029 of file cv.hpp.

MS_family_member_protein = 1001592

family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.

Definition at line 5032 of file cv.hpp.

MS_group_member_with_undefined_relationship_OR_ortholog_protein = 1001593

group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.

Definition at line 5035 of file cv.hpp.

MS_sequence_same_set_protein = 1001594

sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.

Definition at line 5038 of file cv.hpp.

MS_spectrum_same_set_protein = 1001595

spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.

Definition at line 5041 of file cv.hpp.

MS_sequence_sub_set_protein = 1001596

sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.

Definition at line 5044 of file cv.hpp.

MS_spectrum_sub_set_protein = 1001597

spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.

Definition at line 5047 of file cv.hpp.

MS_sequence_subsumable_protein = 1001598

sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.

Definition at line 5050 of file cv.hpp.

MS_spectrum_subsumable_protein = 1001599

spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.

Definition at line 5053 of file cv.hpp.

MS_protein_inference_confidence_category = 1001600

protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).

Definition at line 5056 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE = 1001601

ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.

Definition at line 5059 of file cv.hpp.

MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE = 1001602

ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file.

Definition at line 5062 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE = 1001603

ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).

Definition at line 5065 of file cv.hpp.

MS_ProteomeDiscoverer_Activation_Type_OBSOLETE = 1001604

ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).

Definition at line 5068 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit = 1001605

ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.

Definition at line 5071 of file cv.hpp.

MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE = 1001606

ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).

Definition at line 5074 of file cv.hpp.

MS_ProteomeDiscoverer_Max_Precursor_Mass = 1001607

ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.

Definition at line 5077 of file cv.hpp.

MS_ProteomeDiscoverer_Min_Precursor_Mass = 1001608

ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.

Definition at line 5080 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count = 1001609

ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.

Definition at line 5083 of file cv.hpp.

MS_ProteomeDiscoverer_MS_Order_OBSOLETE = 1001610

ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).

Definition at line 5086 of file cv.hpp.

MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE = 1001611

ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).

Definition at line 5089 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection = 1001612

ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).

Definition at line 5092 of file cv.hpp.

MS_ProteomeDiscoverer_SN_Threshold = 1001613

ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.

Definition at line 5095 of file cv.hpp.

MS_ProteomeDiscoverer_Scan_Type_OBSOLETE = 1001614

ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).

Definition at line 5098 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold = 1001615

ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.

Definition at line 5101 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements = 1001616

ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.

Definition at line 5104 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements = 1001617

ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.

Definition at line 5107 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements = 1001618

ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.

Definition at line 5110 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements = 1001619

ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.

Definition at line 5113 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements = 1001620

ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.

Definition at line 5116 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit = 1001621

ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.

Definition at line 5119 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset = 1001622

ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.

Definition at line 5122 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass = 1001623

ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.

Definition at line 5125 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor = 1001624

ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.

Definition at line 5128 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks = 1001625

ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.

Definition at line 5131 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses = 1001626

ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.

Definition at line 5134 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones = 1001627

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.

Definition at line 5137 of file cv.hpp.

MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak = 1001628

ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS2 input spectra are removed.

Definition at line 5140 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch = 1001629

ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.

Definition at line 5143 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch = 1001630

ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.

Definition at line 5146 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE = 1001631

ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.

Definition at line 5149 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion = 1001632

ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.

Definition at line 5152 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Highest_Charge = 1001633

ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.

Definition at line 5155 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE = 1001634

ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.

Definition at line 5158 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Lowest_Charge = 1001635

ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.

Definition at line 5161 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE = 1001636

ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.

Definition at line 5164 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only = 1001637

ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.

Definition at line 5167 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder = 1001638

ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).

Definition at line 5170 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy = 1001639

ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.

Definition at line 5173 of file cv.hpp.

MS_ProteomeDiscoverer_Xtract_Resolution_At_400 = 1001640

ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.

Definition at line 5176 of file cv.hpp.

MS_ProteomeDiscoverer_Lowest_Charge_State = 1001641

ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.

Definition at line 5179 of file cv.hpp.

MS_ProteomeDiscoverer_Highest_Charge_State = 1001642

ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.

Definition at line 5182 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores = 1001643

ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.

Definition at line 5185 of file cv.hpp.

MS_ProteomeDiscoverer_Dynamic_Modification = 1001644

ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).

Definition at line 5188 of file cv.hpp.

MS_ProteomeDiscoverer_Static_Modification = 1001645

ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.

Definition at line 5191 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE = 1001646

ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.

Definition at line 5194 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search = 1001647

ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.

Definition at line 5197 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size = 1001648

ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.

Definition at line 5200 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL = 1001649

ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.

Definition at line 5203 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search = 1001650

ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.

Definition at line 5206 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_X_Static_Modification = 1001651

ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.

Definition at line 5209 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE = 1001652

ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.

Definition at line 5212 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search = 1001653

ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.

Definition at line 5215 of file cv.hpp.

MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE = 1001654

ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.

Definition at line 5218 of file cv.hpp.

MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE = 1001655

ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.

Definition at line 5221 of file cv.hpp.

MS_Mascot_Instrument = 1001656

Mascot:Instrument: Type of instrument used to acquire the data in the raw file.

Definition at line 5224 of file cv.hpp.

MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites = 1001657

ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.

Definition at line 5227 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score = 1001658

ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.

Definition at line 5230 of file cv.hpp.

MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE = 1001659

ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.

Definition at line 5233 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score = 1001660

ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.

Definition at line 5236 of file cv.hpp.

MS_ProteomeDiscoverer_Protein_Database_OBSOLETE = 1001661

ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).

Definition at line 5239 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor = 1001662

ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.

Definition at line 5242 of file cv.hpp.

MS_ProteomeDiscoverer_Target_FDR_Relaxed = 1001663

ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.

Definition at line 5245 of file cv.hpp.

MS_ProteomeDiscoverer_Target_FDR_Strict = 1001664

ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.

Definition at line 5248 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE = 1001665

ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.

Definition at line 5251 of file cv.hpp.

MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE = 1001666

ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.

Definition at line 5254 of file cv.hpp.

MS_Mascot_use_MudPIT_scoring_OBSOLETE = 1001667

Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.

Definition at line 5257 of file cv.hpp.

MS_ProteomeDiscoverer_Absolute_XCorr_Threshold = 1001668

ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.

Definition at line 5260 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score = 1001669

ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.

Definition at line 5263 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification = 1001670

ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.

Definition at line 5266 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage = 1001671

ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.

Definition at line 5269 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide = 1001672

ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.

Definition at line 5272 of file cv.hpp.

MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide = 1001673

ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.

Definition at line 5275 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered = 1001674

ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.

Definition at line 5278 of file cv.hpp.

MS_ProteomeDiscoverer_Maximum_Peptides_Output = 1001675

ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.

Definition at line 5281 of file cv.hpp.

MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide = 1001676

ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.

Definition at line 5284 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification = 1001677

ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.

Definition at line 5287 of file cv.hpp.

MS_ProteomeDiscoverer_Peptide_CTerminus = 1001678

ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.

Definition at line 5290 of file cv.hpp.

MS_ProteomeDiscoverer_Peptide_NTerminus = 1001679

ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.

Definition at line 5293 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor = 1001680

ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.

Definition at line 5296 of file cv.hpp.

MS_ProteomeDiscoverer_Protein_Relevance_Threshold = 1001681

ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.

Definition at line 5299 of file cv.hpp.

MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE = 1001682

ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.

Definition at line 5302 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses = 1001683

ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.

Definition at line 5305 of file cv.hpp.

MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions = 1001684

ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.

Definition at line 5308 of file cv.hpp.

MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions = 1001685

ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.

Definition at line 5311 of file cv.hpp.

MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions = 1001686

ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.

Definition at line 5314 of file cv.hpp.

MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions = 1001687

ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.

Definition at line 5317 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions = 1001688

ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.

Definition at line 5320 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions = 1001689

ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.

Definition at line 5323 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions = 1001690

ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.

Definition at line 5326 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions = 1001691

ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.

Definition at line 5329 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions = 1001692

ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.

Definition at line 5332 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions = 1001693

ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.

Definition at line 5335 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions = 1001694

ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.

Definition at line 5338 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions = 1001695

ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.

Definition at line 5341 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions = 1001696

ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.

Definition at line 5344 of file cv.hpp.

MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff = 1001697

ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.

Definition at line 5347 of file cv.hpp.

MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method = 1001698

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.

Definition at line 5350 of file cv.hpp.

MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance = 1001699

ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.

Definition at line 5353 of file cv.hpp.

MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method = 1001700

ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.

Definition at line 5356 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE = 1001701

ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).

Definition at line 5359 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Exporter_File_name = 1001702

ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.

Definition at line 5362 of file cv.hpp.

MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins = 1001703

ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.

Definition at line 5365 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1 = 1001704

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.

Definition at line 5368 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2 = 1001705

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.

Definition at line 5371 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3 = 1001706

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.

Definition at line 5374 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4 = 1001707

ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.

Definition at line 5377 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1 = 1001708

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.

Definition at line 5380 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2 = 1001709

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.

Definition at line 5383 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3 = 1001710

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.

Definition at line 5386 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4 = 1001711

ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.

Definition at line 5389 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1 = 1001712

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.

Definition at line 5392 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2 = 1001713

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.

Definition at line 5395 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3 = 1001714

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.

Definition at line 5398 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4 = 1001715

ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.

Definition at line 5401 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1 = 1001716

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.

Definition at line 5404 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2 = 1001717

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.

Definition at line 5407 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3 = 1001718

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.

Definition at line 5410 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4 = 1001719

ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.

Definition at line 5413 of file cv.hpp.

MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE = 1001720

ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter.

Definition at line 5416 of file cv.hpp.

MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE = 1001721

ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter.

Definition at line 5419 of file cv.hpp.

MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE = 1001722

ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter.

Definition at line 5422 of file cv.hpp.

MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE = 1001723

ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter.

Definition at line 5425 of file cv.hpp.

MS_ProteomeDiscoverer_Static_Modification_for_X = 1001724

ProteomeDiscoverer:Static Modification for X: Static Modification for X.

Definition at line 5428 of file cv.hpp.

MS_ProteomeDiscoverer_Initial_minimal_peptide_probability = 1001725

ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.

Definition at line 5431 of file cv.hpp.

MS_ProteomeDiscoverer_Minimal_peptide_probability = 1001726

ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.

Definition at line 5434 of file cv.hpp.

MS_ProteomeDiscoverer_Minimal_peptide_weight = 1001727

ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.

Definition at line 5437 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_input1_spectra = 1001728

ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.

Definition at line 5440 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_input2_spectra = 1001729

ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.

Definition at line 5443 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_input3_spectra = 1001730

ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.

Definition at line 5446 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_input4_spectra = 1001731

ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.

Definition at line 5449 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_input5_spectra = 1001732

ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.

Definition at line 5452 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins = 1001733

ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).

Definition at line 5455 of file cv.hpp.

MS_ProteomeDiscoverer_Organism_OBSOLETE = 1001734

ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).

Definition at line 5458 of file cv.hpp.

MS_ProteomeDiscoverer_Reference_Database_OBSOLETE = 1001735

ProteomeDiscoverer:Reference Database: Full path database name.

Definition at line 5461 of file cv.hpp.

MS_ProteomeDiscoverer_Residue_substitution_list = 1001736

ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.

Definition at line 5464 of file cv.hpp.

MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE = 1001737

ProteomeDiscoverer:Source file extension: File type (if not pepXML).

Definition at line 5467 of file cv.hpp.

MS_ProteomeDiscoverer_Source_Files_OBSOLETE = 1001738

ProteomeDiscoverer:Source Files: Input pepXML files.

Definition at line 5470 of file cv.hpp.

MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE = 1001739

ProteomeDiscoverer:Source Files old: Input pepXML files (old).

Definition at line 5473 of file cv.hpp.

MS_ProteomeDiscoverer_WinCyg_reference_database = 1001740

ProteomeDiscoverer:WinCyg reference database: Windows full path for database.

Definition at line 5476 of file cv.hpp.

MS_ProteomeDiscoverer_WinCyg_source_files = 1001741

ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.

Definition at line 5479 of file cv.hpp.

MS_LTQ_Orbitrap_Velos = 1001742

LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.

Definition at line 5482 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions = 1001743

ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.

Definition at line 5485 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions = 1001744

ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.

Definition at line 5488 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions = 1001745

ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.

Definition at line 5491 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions = 1001746

ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.

Definition at line 5494 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions = 1001747

ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.

Definition at line 5497 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions = 1001748

ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.

Definition at line 5500 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions = 1001749

ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.

Definition at line 5503 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions = 1001750

ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.

Definition at line 5506 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions = 1001751

ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.

Definition at line 5509 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation = 1001752

ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.

Definition at line 5512 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly = 1001753

ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).

Definition at line 5515 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this = 1001754

ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.

Definition at line 5518 of file cv.hpp.

MS_contact_phone_number = 1001755

contact phone number: Phone number of the contact person or organization.

Definition at line 5521 of file cv.hpp.

Referenced by testContact(), testOrganization(), and testPerson().

MS_contact_fax_number = 1001756

contact fax number: Fax number for the contact person or organization.

Definition at line 5524 of file cv.hpp.

Referenced by testContact(), testOrganization(), and testPerson().

MS_contact_toll_free_phone_number = 1001757

contact toll-free phone number: Toll-free phone number of the contact person or organization.

Definition at line 5527 of file cv.hpp.

Referenced by testContact(), testOrganization(), and testPerson().

MS_Mascot_SigThresholdType = 1001758

Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').

Definition at line 5530 of file cv.hpp.

MS_Mascot_ProteinGrouping = 1001759

Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').

Definition at line 5533 of file cv.hpp.

MS_Percolator_features = 1001760

Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.

Definition at line 5536 of file cv.hpp.

MS_ACQUITY_UPLC = 1001761

ACQUITY UPLC: Waters LC-system ACQUITY UPLC.

Definition at line 5539 of file cv.hpp.

MS_ACQUITY_UPLC_H_Class = 1001762

ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.

Definition at line 5542 of file cv.hpp.

MS_ACQUITY_UPLC_H_Class_Bio = 1001763

ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.

Definition at line 5545 of file cv.hpp.

MS_ACQUITY_UPLC_I_Class = 1001764

ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.

Definition at line 5548 of file cv.hpp.

MS_ACQUITY_UPLC_Systems_with_2D_Technology = 1001765

ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.

Definition at line 5551 of file cv.hpp.

MS_nanoACQUITY_UPLC = 1001766

nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.

Definition at line 5554 of file cv.hpp.

MS_nanoACQUITY_UPLC_System_with_Technology = 1001767

nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology.

Definition at line 5557 of file cv.hpp.

MS_nanoACQUITY_UPLC_with_HDX_Technology = 1001768

nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.

Definition at line 5560 of file cv.hpp.

MS_TRIZAIC_UPLC_nanoTile = 1001769

TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.

Definition at line 5563 of file cv.hpp.

MS_GCT_Premier = 1001770

GCT Premier: Waters oa-ToF based GCT Premier.

Definition at line 5566 of file cv.hpp.

MS_MALDI_Synapt_G2_HDMS = 1001771

MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.

Definition at line 5569 of file cv.hpp.

MS_MALDI_Synapt_G2_MS = 1001772

MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.

Definition at line 5572 of file cv.hpp.

MS_MALDI_Synapt_G2_S_HDMS = 1001773

MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.

Definition at line 5575 of file cv.hpp.

MS_MALDI_Synapt_G2_S_MS = 1001774

MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.

Definition at line 5578 of file cv.hpp.

MS_MALDI_Synapt_HDMS = 1001775

MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.

Definition at line 5581 of file cv.hpp.

MS_MALDI_Synapt_MS = 1001776

MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.

Definition at line 5584 of file cv.hpp.

MS_Synapt_G2_HDMS = 1001777

Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.

Definition at line 5587 of file cv.hpp.

MS_Synapt_G2_MS = 1001778

Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.

Definition at line 5590 of file cv.hpp.

MS_Synapt_G2_S_HDMS = 1001779

Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.

Definition at line 5593 of file cv.hpp.

MS_Synapt_G2_S_MS = 1001780

Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.

Definition at line 5596 of file cv.hpp.

MS_Synapt_HDMS = 1001781

Synapt HDMS: Waters oa-ToF based Synapt HDMS.

Definition at line 5599 of file cv.hpp.

MS_Synapt_MS = 1001782

Synapt MS: Waters oa-ToF based Synapt MS.

Definition at line 5602 of file cv.hpp.

MS_Xevo_G2_Q_Tof = 1001783

Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.

Definition at line 5605 of file cv.hpp.

MS_Xevo_G2_Tof = 1001784

Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.

Definition at line 5608 of file cv.hpp.

MS_Xevo_Q_Tof = 1001785

Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.

Definition at line 5611 of file cv.hpp.

MS_3100 = 1001786

3100: Waters quadrupole based 3100.

Definition at line 5614 of file cv.hpp.

MS_Acquity_SQD = 1001787

Acquity SQD: Waters quadrupole based Acquity SQD.

Definition at line 5617 of file cv.hpp.

MS_Acquity_TQD = 1001788

Acquity TQD: Waters quadrupole based Acquity TQD.

Definition at line 5620 of file cv.hpp.

MS_Quattro_micro_GC = 1001789

Quattro micro GC: Waters quadrupole based Quattro micro GC.

Definition at line 5623 of file cv.hpp.

MS_Xevo_TQ_MS = 1001790

Xevo TQ MS: Waters quadrupole based Xevo TQ MS.

Definition at line 5626 of file cv.hpp.

MS_Xevo_TQD = 1001791

Xevo TQD: Waters quadrupole based Xevo TQD.

Definition at line 5629 of file cv.hpp.

MS_Xevo_TQ_S = 1001792

Xevo TQ-S: Waters quadrupole based Xevo TQ-S.

Definition at line 5632 of file cv.hpp.

MS_Mascot_PreferredTaxonomy = 1001793

Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.

Definition at line 5635 of file cv.hpp.

MS_Empower = 1001795

Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.

Definition at line 5638 of file cv.hpp.

MS_Unify = 1001796

Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition.

Definition at line 5641 of file cv.hpp.

MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE = 1001797

travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.

Definition at line 5644 of file cv.hpp.

TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.

Definition at line 5647 of file cv.hpp.

MS_LECO_software = 1001798

LECO software: LECO software for data acquisition and analysis.

Definition at line 5650 of file cv.hpp.

MS_ChromaTOF_software = 1001799

ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.

Definition at line 5653 of file cv.hpp.

MS_LECO_instrument_model = 1001800

LECO instrument model: LECO instrument model.

Definition at line 5656 of file cv.hpp.

MS_Pegasus_HRT = 1001801

Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.

Definition at line 5659 of file cv.hpp.

MS_Citius_HRT = 1001802

Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.

Definition at line 5662 of file cv.hpp.

MS_Pegasus = 1001803

Pegasus: LECO GC time-of-flight mass spectrometer.

Definition at line 5665 of file cv.hpp.

MS_TruTOF = 1001804

TruTOF: LECO bench-top GC time-of-flight mass spectrometer.

Definition at line 5668 of file cv.hpp.

MS_quantification_datatype = 1001805

quantification datatype: The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group.

Definition at line 5671 of file cv.hpp.

MS_quantification_object_attribute = 1001806

quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.

Definition at line 5674 of file cv.hpp.

MS_study_variable_attribute = 1001807

study variable attribute: Attribute describing a study variable.

Definition at line 5677 of file cv.hpp.

MS_technical_replicate = 1001808

technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.

Definition at line 5680 of file cv.hpp.

MS_biological_replicate = 1001809

biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample.

Definition at line 5683 of file cv.hpp.

MS_experimental_condition__case_ = 1001810

experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.

Definition at line 5686 of file cv.hpp.

MS_experimental_condition__control_ = 1001811

experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.

Definition at line 5689 of file cv.hpp.

MS_experimental_condition__disease_ = 1001812

experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.

Definition at line 5692 of file cv.hpp.

MS_experimental_condition__healthy_ = 1001813

experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.

Definition at line 5695 of file cv.hpp.

MS_generic_experimental_condition = 1001814

generic experimental condition: The experimental condition is given in the value of this term.

Definition at line 5698 of file cv.hpp.

MS_time_series__time_point_X = 1001815

time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.

Definition at line 5701 of file cv.hpp.

MS_dilution_series__concentration_X = 1001816

dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.

Definition at line 5704 of file cv.hpp.

MS_raw_file_attribute = 1001817

raw file attribute: Attribute describing a raw file.

Definition at line 5707 of file cv.hpp.

MS_one_sample_run = 1001818

one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).

Definition at line 5710 of file cv.hpp.

MS_two_sample_run = 1001819

two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).

Definition at line 5713 of file cv.hpp.

MS_three_sample_run = 1001820

three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).

Definition at line 5716 of file cv.hpp.

MS_four_sample_run = 1001821

four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).

Definition at line 5719 of file cv.hpp.

MS_eight_sample_run = 1001822

eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).

Definition at line 5722 of file cv.hpp.

MS_raw_files_group_attribute = 1001823

raw files group attribute: Attribute describing, how raw files build a raw file group.

Definition at line 5725 of file cv.hpp.

MS_merge_of_runs_of_1D_gel_bands = 1001824

merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.

Definition at line 5728 of file cv.hpp.

MS_feature_list_attribute = 1001825

feature list attribute: Attribute describing a feature list.

Definition at line 5731 of file cv.hpp.

MS_mass_trace_reporting__rectangles = 1001826

mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.

Definition at line 5734 of file cv.hpp.

MS_mass_trace_reporting__polygons = 1001827

mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit.

Definition at line 5737 of file cv.hpp.

MS_feature_attribute = 1001828

feature attribute: Attribute describing a feature.

Definition at line 5740 of file cv.hpp.

MS_SRM_transition_ID = 1001829

SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition.

Definition at line 5743 of file cv.hpp.

MS_Progenesis_LC_MS = 1001830

Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.

Definition at line 5746 of file cv.hpp.

MS_SILACAnalyzer = 1001831

SILACAnalyzer: Software for SILAC workflow.

Definition at line 5749 of file cv.hpp.

MS_quantitation_software_comment_or_customizations = 1001832

quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software.

Definition at line 5752 of file cv.hpp.

MS_quantitation_analysis_summary = 1001833

quantitation analysis summary: The overall workflow of this quantitation report.

Definition at line 5755 of file cv.hpp.

MS_LC_MS_label_free_quantitation_analysis = 1001834

LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).

Definition at line 5758 of file cv.hpp.

MS_SILAC_quantitation_analysis = 1001835

SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).

Definition at line 5761 of file cv.hpp.

MS_spectral_counting_quantitation_analysis = 1001836

spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant).

Definition at line 5764 of file cv.hpp.

MS_iTRAQ_quantitation_analysis = 1001837

iTRAQ quantitation analysis: Quantification analysis using the SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z.

Definition at line 5767 of file cv.hpp.

MS_SRM_quantitation_analysis = 1001838

SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).

Definition at line 5770 of file cv.hpp.

MS_metabolic_labeling_14N___15N_quantitation_analysis = 1001839

metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).

Definition at line 5773 of file cv.hpp.

MS_LC_MS_feature_intensity = 1001840

LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.

Definition at line 5776 of file cv.hpp.

MS_LC_MS_feature_volume = 1001841

LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.

Definition at line 5779 of file cv.hpp.

MS_peptide_PSM_count = 1001842

peptide PSM count: The number of MS2 spectra identified for this peptide in spectral counting.

Definition at line 5782 of file cv.hpp.

MS_MS1_feature_maximum_intensity = 1001843

MS1 feature maximum intensity: Maximum intensity of MS1 feature.

Definition at line 5785 of file cv.hpp.

MS_MS1_feature_area = 1001844

MS1 feature area: Area of MS1 feature.

Definition at line 5788 of file cv.hpp.

MS_peak_area_OBSOLETE = 1001845

peak area: Area of MS1 peak (e.g. SILAC, 15N).

Definition at line 5791 of file cv.hpp.

MS_isotopic_pattern_area = 1001846

isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).

Definition at line 5794 of file cv.hpp.

MS_reporter_ion_intensity = 1001847

reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).

Definition at line 5797 of file cv.hpp.

MS_simple_ratio_of_two_values = 1001848

simple ratio of two values: Simple ratio of two values (enumerator and denominator).

Definition at line 5800 of file cv.hpp.

MS_sum_of_MatchedFeature_values_OBSOLETE = 1001849

sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.

Definition at line 5803 of file cv.hpp.

MS_normalized_peptide_value = 1001850

normalized peptide value: Normalized peptide value.

Definition at line 5806 of file cv.hpp.

MS_protein_value__sum_of_peptide_values = 1001851

protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.

Definition at line 5809 of file cv.hpp.

MS_normalized_protein_value = 1001852

normalized protein value: Normalized protein value.

Definition at line 5812 of file cv.hpp.

MS_max_fold_change = 1001853

max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).

Definition at line 5815 of file cv.hpp.

MS_ANOVA_p_value = 1001854

ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).

Definition at line 5818 of file cv.hpp.

MS_t_test_p_value = 1001855

t-test p-value: P-value of t-Test of two groups.

Definition at line 5821 of file cv.hpp.

MS_reporter_ion_raw_value = 1001856

reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).

Definition at line 5824 of file cv.hpp.

MS_reporter_ion_normalized_value = 1001857

reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).

Definition at line 5827 of file cv.hpp.

MS_XIC_area = 1001858

XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).

Definition at line 5830 of file cv.hpp.

MS_normalized_XIC_area = 1001859

normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).

Definition at line 5833 of file cv.hpp.

MS_protein_value__mean_of_peptide_ratios = 1001860

protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.

Definition at line 5836 of file cv.hpp.

MS_quantification_data_processing = 1001861

quantification data processing: Terms used to describe types of quantification data processing.

Definition at line 5839 of file cv.hpp.

MS_normalization_to_mean_of_sum_of_all_proteins = 1001862

normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).

Definition at line 5842 of file cv.hpp.

MS_quantile_normalization__proteins = 1001863

quantile normalization, proteins: Normalization of protein values to approach the same distribution.

Definition at line 5845 of file cv.hpp.

MS_quantile_normalization__peptides = 1001864

quantile normalization, peptides: Normalization of peptide values to approach the same distribution.

Definition at line 5848 of file cv.hpp.

MS_Progenesis_automatic_alignment = 1001865

Progenesis automatic alignment: Automatic RT alignment of Progenesis software.

Definition at line 5851 of file cv.hpp.

MS_Progenesis_manual_alignment = 1001866

Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.

Definition at line 5854 of file cv.hpp.

MS_Progenesis_normalization = 1001867

Progenesis normalization: Normalization as performed by Progenesis LC-MS.

Definition at line 5857 of file cv.hpp.

MS_distinct_peptide_level_q_value = 1001868

distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry).

Definition at line 5860 of file cv.hpp.

MS_protein_level_q_value = 1001869

protein-level q-value: Estimation of the q-value for proteins.

Definition at line 5863 of file cv.hpp.

MS_peptide_sequence_level_p_value = 1001870

peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 5866 of file cv.hpp.

MS_protein_level_p_value = 1001871

protein-level p-value: Estimation of the p-value for proteins.

Definition at line 5869 of file cv.hpp.

MS_peptide_sequence_level_e_value = 1001872

peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 5872 of file cv.hpp.

MS_protein_level_e_value = 1001873

protein-level e-value: Estimation of the e-value for proteins.

Definition at line 5875 of file cv.hpp.

MS_FDRScore_OBSOLETE = 1001874

FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0.

Definition at line 5878 of file cv.hpp.

MS_modification_motif = 1001875

modification motif: The regular expression describing the sequence motif for a modification.

Definition at line 5881 of file cv.hpp.

MS_modification_probability = 1001876

modification probability: The a priori probability of a modification.

Definition at line 5884 of file cv.hpp.

MS_ChromaTOF_HRT_software = 1001877

ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.

Definition at line 5887 of file cv.hpp.

MS_MALDI_Solutions_Microbial_Identification = 1001878

MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.

Definition at line 5890 of file cv.hpp.

MS_offset_voltage = 1001879

offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.

Definition at line 5893 of file cv.hpp.

MS_in_source_collision_induced_dissociation = 1001880

in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.

Definition at line 5896 of file cv.hpp.

MS_mz5_format = 1001881

mz5 format: mz5 file format, modelled after mzML.

Definition at line 5899 of file cv.hpp.

Referenced by testIdentifyFileFormat().

MS_transition_validation_attribute = 1001882

transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.

Definition at line 5902 of file cv.hpp.

MS_coefficient_of_variation = 1001883

coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.

Definition at line 5905 of file cv.hpp.

MS_signal_to_noise_ratio = 1001884

signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.

Definition at line 5908 of file cv.hpp.

MS_command_line_parameters = 1001885

command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.

Definition at line 5911 of file cv.hpp.

MS_SQID = 1001886

SQID: Software for data analysis of peptides and proteins.

Definition at line 5914 of file cv.hpp.

MS_SQID_score = 1001887

SQID:score: The SQID result 'Score'.

Definition at line 5917 of file cv.hpp.

MS_SQID_deltaScore = 1001888

SQID:deltaScore: The SQID result 'deltaScore'.

Definition at line 5920 of file cv.hpp.

MS_SQID_protein_score = 1001889

SQID:protein score: The SQID result 'protein score'.

Definition at line 5923 of file cv.hpp.

MS_Progenesis_protein_normalised_abundance = 1001890

Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.

Definition at line 5926 of file cv.hpp.

MS_Progenesis_peptide_normalised_abundance = 1001891

Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.

Definition at line 5929 of file cv.hpp.

MS_Progenesis_protein_raw_abundance = 1001892

Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.

Definition at line 5932 of file cv.hpp.

MS_Progenesis_peptide_raw_abundance = 1001893

Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.

Definition at line 5935 of file cv.hpp.

MS_Progenesis_confidence_score = 1001894

Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.

Definition at line 5938 of file cv.hpp.

MS_Progenesis_peptide_count = 1001895

Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.

Definition at line 5941 of file cv.hpp.

MS_Progenesis_feature_intensity = 1001896

Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.

Definition at line 5944 of file cv.hpp.

MS_MaxQuant_peptide_counts__unique_ = 1001897

MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.

Definition at line 5947 of file cv.hpp.

MS_MaxQuant_peptide_counts__all_ = 1001898

MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.

Definition at line 5950 of file cv.hpp.

MS_MaxQuant_peptide_counts__razor_unique_ = 1001899

MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.

Definition at line 5953 of file cv.hpp.

MS_MaxQuant_sequence_length = 1001900

MaxQuant:sequence length: The data type sequence length produced by MaxQuant.

Definition at line 5956 of file cv.hpp.

MS_MaxQuant_PEP = 1001901

MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.

Definition at line 5959 of file cv.hpp.

MS_MaxQuant_LFQ_intensity = 1001902

MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.

Definition at line 5962 of file cv.hpp.

MS_MaxQuant_feature_intensity = 1001903

MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.

Definition at line 5965 of file cv.hpp.

MS_MaxQuant_MS_MS_count = 1001904

MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.

Definition at line 5968 of file cv.hpp.

MS_emPAI_value = 1001905

emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.

Definition at line 5971 of file cv.hpp.

MS_APEX_value = 1001906

APEX value: The APEX value of protein abundance, produced from the APEX software.

Definition at line 5974 of file cv.hpp.

MS_retention_time_window_width = 1001907

retention time window width: The full width of a retention time window for a chromatographic peak.

Definition at line 5977 of file cv.hpp.

MS_ISQ = 1001908

ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.

Definition at line 5980 of file cv.hpp.

MS_Velos_Plus = 1001909

Velos Plus: Thermo Scientific second generation Velos.

Definition at line 5983 of file cv.hpp.

MS_LTQ_Orbitrap_Elite = 1001910

LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.

Definition at line 5986 of file cv.hpp.

MS_Q_Exactive = 1001911

Q Exactive: Thermo Scientific Q Exactive.

Definition at line 5989 of file cv.hpp.

MS_PinPoint = 1001912

PinPoint: Thermo Scientific PinPoint SRM analysis software.

Definition at line 5992 of file cv.hpp.

MS_S_lens_voltage = 1001913

S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.

Definition at line 5995 of file cv.hpp.

MS_pymzML = 1001914

pymzML: Python module to interface mzML Data.

Definition at line 5998 of file cv.hpp.

MS_leukocyte_elastase = 1001915

leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).

Definition at line 6001 of file cv.hpp.

MS_proline_endopeptidase = 1001916

proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).

Definition at line 6004 of file cv.hpp.

MS_glutamyl_endopeptidase = 1001917

glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).

Definition at line 6007 of file cv.hpp.

Referenced by testCleavageAgents().

MS_staphylococcal_protease = MS_glutamyl_endopeptidase

staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).

Definition at line 6010 of file cv.hpp.

Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).

Definition at line 6013 of file cv.hpp.

Referenced by testCleavageAgents().

MS_2_iodobenzoate = 1001918

2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.

Definition at line 6016 of file cv.hpp.

MS_ProteomeXchange_accession_number = 1001919

ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.

Definition at line 6019 of file cv.hpp.

MS_ProteomeXchange_accession_number_version_number = 1001921

ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.

Definition at line 6022 of file cv.hpp.

MS_Digital_Object_Identifier__DOI_ = 1001922

Digital Object Identifier (DOI): DOI unique identifier of a publication.

Definition at line 6025 of file cv.hpp.

doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.

Definition at line 6028 of file cv.hpp.

MS_external_reference_keyword = 1001923

external reference keyword: Free text attribute that can enrich the information about an entity.

Definition at line 6031 of file cv.hpp.

MS_journal_article_keyword = 1001924

journal article keyword: Keyword present in a scientific publication.

Definition at line 6034 of file cv.hpp.

MS_submitter_keyword = 1001925

submitter keyword: Keyword assigned by the data submitter.

Definition at line 6037 of file cv.hpp.

MS_curator_keyword = 1001926

curator keyword: Keyword assigned by a data curator.

Definition at line 6040 of file cv.hpp.

MS_Tranche_file_hash = 1001927

Tranche file hash: Hash assigned by the Tranche resource to an individual file.

Definition at line 6043 of file cv.hpp.

MS_Tranche_project_hash = 1001928

Tranche project hash: Hash assigned by the Tranche resource to a whole project.

Definition at line 6046 of file cv.hpp.

MS_PRIDE_experiment_URI = 1001929

PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.

Definition at line 6049 of file cv.hpp.

MS_PRIDE_project_URI = 1001930

PRIDE project URI: URI that allows the access to one project in the PRIDE database.

Definition at line 6052 of file cv.hpp.

MS_source_interface = 1001931

source interface: The source interface.

Definition at line 6055 of file cv.hpp.

MS_source_interface_model = 1001932

source interface model: The source interface model.

Definition at line 6058 of file cv.hpp.

MS_source_sprayer = 1001933

source sprayer: The source sprayer.

Definition at line 6061 of file cv.hpp.

MS_source_sprayer_type = 1001934

source sprayer type: The source sprayer type.

Definition at line 6064 of file cv.hpp.

MS_source_sprayer_manufacturer = 1001935

source sprayer manufacturer: The source sprayer manufacturer.

Definition at line 6067 of file cv.hpp.

MS_source_sprayer_model = 1001936

source sprayer model: The source sprayer model.

Definition at line 6070 of file cv.hpp.

MS_sample_plate = 1001937

sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.

Definition at line 6073 of file cv.hpp.

MS_sample_plate_type = 1001938

sample plate type: The sample plate type.

Definition at line 6076 of file cv.hpp.

MS_stainless_steel_plate = 1001939

stainless steel plate: Stainless steel plate.

Definition at line 6079 of file cv.hpp.

MS_coated_glass_plate = 1001940

coated glass plate: Coated glass plate.

Definition at line 6082 of file cv.hpp.

MS_electrospray_supply_type = 1001941

electrospray supply type: Whether the sprayer is fed or is loaded with sample once.

Definition at line 6085 of file cv.hpp.

MS_static_supply_electrospray = 1001942

static supply electrospray: The sprayer is loaded with sample once.

Definition at line 6088 of file cv.hpp.

MS_fed_supply_electrospray = 1001943

fed supply electrospray: The sprayer is continuously fed with sample.

Definition at line 6091 of file cv.hpp.

MS_Collision_cell_exit_potential = 1001944

Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.

Definition at line 6094 of file cv.hpp.

CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.

Definition at line 6097 of file cv.hpp.

MS_Pegasus_4D = 1001945

Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.

Definition at line 6100 of file cv.hpp.

MS_PEAKS_Studio = 1001946

PEAKS Studio: PEAKS Studio software for data analysis.

Definition at line 6103 of file cv.hpp.

MS_PEAKS_Online = 1001947

PEAKS Online: PEAKS Online software for high throughput data analysis.

Definition at line 6106 of file cv.hpp.

MS_PEAKS_Node = 1001948

PEAKS Node: PEAKS Node software for high throughput data analysis.

Definition at line 6109 of file cv.hpp.

MS_BSI_software = 1001949

BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.

Definition at line 6112 of file cv.hpp.

MS_PEAKS_peptideScore = 1001950

PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.

Definition at line 6115 of file cv.hpp.

MS_PEAKS_proteinScore = 1001951

PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.

Definition at line 6118 of file cv.hpp.

MS_ZCore_probScore = 1001952

ZCore:probScore: The ZCore probability score.

Definition at line 6121 of file cv.hpp.

MS_source_interface_manufacturer = 1001953

source interface manufacturer: The source interface manufacturer.

Definition at line 6124 of file cv.hpp.

MS_acquisition_parameter = 1001954

acquisition parameter: Parameters used in the mass spectrometry acquisition.

Definition at line 6127 of file cv.hpp.

MS_no_cleavage = 1001955

no cleavage: No cleavage.

Definition at line 6130 of file cv.hpp.

Referenced by testBSADigestion(), testCleavageAgents(), and testDigestedPeptides().

MS_unspecific_cleavage = 1001956

unspecific cleavage: Unspecific cleavage.

Definition at line 6133 of file cv.hpp.

Referenced by testBSADigestion(), testCleavageAgents(), and testDigestedPeptides().

MS______ALIV_____P_ = 1001957

(?<=[ALIV])(?!P): Regular expression for leukocyte elastase.

Definition at line 6136 of file cv.hpp.

MS______HKR_P____P_ = 1001958

(?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.

Definition at line 6139 of file cv.hpp.

MS_______E_E_ = 1001959

(?<=[^E]E): Regular expression for glutamyl endopeptidase.

Definition at line 6142 of file cv.hpp.

MS_____W_ = 1001960

(?<=W): Regular expression for 2-iodobenzoate.

Definition at line 6145 of file cv.hpp.

MS_peptide_spectrum_match_scoring_algorithm = 1001961

peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.

Definition at line 6148 of file cv.hpp.

MS_Mascot_C13_counts = 1001962

Mascot:C13 counts: C13 peaks to use in peak detection.

Definition at line 6151 of file cv.hpp.

MS_ProteinExtractor_Weighting = 1001963

ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.

Definition at line 6154 of file cv.hpp.

MS_ProteinScape_second_round_Mascot = 1001964

ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.

Definition at line 6157 of file cv.hpp.

MS_ProteinScape_second_round_Phenyx = 1001965

ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.

Definition at line 6160 of file cv.hpp.

MS_product_ion_mobility = 1001966

product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.

Definition at line 6163 of file cv.hpp.

MS_product_ion_drift_time_OBSOLETE = 1001967

product ion drift time: The ion drift time of an MS2 product ion.

Definition at line 6166 of file cv.hpp.

MS_PTM_localization_PSM_level_statistic = 1001968

PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level.

Definition at line 6169 of file cv.hpp.

MS_phosphoRS_score = 1001969

phosphoRS score: phosphoRS score for PTM site location at the PSM-level.

Definition at line 6172 of file cv.hpp.

MS_phosphoRS_sequence_probability = 1001970

phosphoRS sequence probability: Probability that the respective isoform is correct.

Definition at line 6175 of file cv.hpp.

MS_phosphoRS_site_probability = 1001971

phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.

Definition at line 6178 of file cv.hpp.

MS_PTM_scoring_algorithm_version = 1001972

PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.

Definition at line 6181 of file cv.hpp.

MS_DeBunker = 1001973

DeBunker: DeBunker software.

Definition at line 6184 of file cv.hpp.

MS_DeBunker_score = 1001974

DeBunker:score: Score specific to DeBunker.

Definition at line 6187 of file cv.hpp.

MS_delta_m_z = 1001975

delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.

Definition at line 6190 of file cv.hpp.

MS_m_z_difference = MS_delta_m_z

m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.

Definition at line 6193 of file cv.hpp.

MS_delta_M = 1001976

delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.

Definition at line 6196 of file cv.hpp.

MS_mass_difference = MS_delta_M

mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.

Definition at line 6199 of file cv.hpp.

MS_MSQuant = 1001977

MSQuant: MSQuant software.

Definition at line 6202 of file cv.hpp.

MS_MSQuant_PTM_score = 1001978

MSQuant:PTM-score: The PTM score from MSQuant software.

Definition at line 6205 of file cv.hpp.

MS_MaxQuant_PTM_Score = 1001979

MaxQuant:PTM Score: The PTM score from MaxQuant software.

Definition at line 6208 of file cv.hpp.

MS_MaxQuant_Phospho__STY__Probabilities = 1001980

MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.

Definition at line 6211 of file cv.hpp.

MS_MaxQuant_Phospho__STY__Score_Diffs = 1001981

MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.

Definition at line 6214 of file cv.hpp.

MS_MaxQuant_P_site_localization_probability = 1001982

MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.

Definition at line 6217 of file cv.hpp.

MS_MaxQuant_PTM_Delta_Score = 1001983

MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).

Definition at line 6220 of file cv.hpp.

MS_Ascore_software = 1001984

Ascore software: Ascore software.

Definition at line 6223 of file cv.hpp.

MS_Ascore = 1001985

Ascore: A-score for PTM site location at the PSM-level.

Definition at line 6226 of file cv.hpp.

MS_H_Score = 1001986

H-Score: H-Score for peptide phosphorylation site location.

Definition at line 6229 of file cv.hpp.

MS_vacuum_drying_MALDI_sample_preparation = 1001987

vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.

Definition at line 6232 of file cv.hpp.

MS_crushed_crystal_MALDI_sample_preparation = 1001988

crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.

Definition at line 6235 of file cv.hpp.

MS_fast_evaporation_MALDI_sample_preparation = 1001989

fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.

Definition at line 6238 of file cv.hpp.

MS_overlayer_MALDI_sample_preparation = 1001990

overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.

Definition at line 6241 of file cv.hpp.

MS_sandwich_MALDI_sample_preparation = 1001991

sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.

Definition at line 6244 of file cv.hpp.

MS_spin_coating_MALDI_sample_preparation = 1001992

spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.

Definition at line 6247 of file cv.hpp.

MS_quick_and_dirty_MALDI_sample_preparation = 1001993

quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.

Definition at line 6250 of file cv.hpp.

MS_top_hat_baseline_reduction = 1001994

top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.

Definition at line 6253 of file cv.hpp.

MS_convex_hull_baseline_reduction = 1001995

convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.

Definition at line 6256 of file cv.hpp.

MS_median_baseline_reduction = 1001996

median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.

Definition at line 6259 of file cv.hpp.

MS_wavelet_transformation_smoothing = 1001997

wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.

Definition at line 6262 of file cv.hpp.

MS_sophisticated_numerical_annotation_procedure = 1001998

sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.

Definition at line 6265 of file cv.hpp.

SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.

Definition at line 6268 of file cv.hpp.

MS_area_normalization = 1001999

area normalization: Normalization of areas below the curves.

Definition at line 6271 of file cv.hpp.

MS_LIFT = 1002000

LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.

Definition at line 6274 of file cv.hpp.

MS_MS1_label_based_raw_feature_quantitation = 1002001

MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.

Definition at line 6277 of file cv.hpp.

MS_MS1_label_based_peptide_level_quantitation = 1002002

MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.

Definition at line 6280 of file cv.hpp.

MS_MS1_label_based_protein_level_quantitation = 1002003

MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.

Definition at line 6283 of file cv.hpp.

MS_MS1_label_based_proteingroup_level_quantitation = 1002004

MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.

Definition at line 6286 of file cv.hpp.

MS_iRT_retention_time_normalization_standard = 1002005

iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.

Definition at line 6289 of file cv.hpp.

MS_SRM_transition_type = 1002006

SRM transition type: The type of the transitions, e.g. target or decoy.

Definition at line 6292 of file cv.hpp.

MS_MRM_transition_type = MS_SRM_transition_type

MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.

Definition at line 6295 of file cv.hpp.

MS_target_SRM_transition = 1002007

target SRM transition: A transition used to target a specific compound that may be in the sample.

Definition at line 6298 of file cv.hpp.

MS_target_MRM_transition = MS_target_SRM_transition

target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.

Definition at line 6301 of file cv.hpp.

MS_decoy_SRM_transition = 1002008

decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.

Definition at line 6304 of file cv.hpp.

MS_decoy_MRM_transition = MS_decoy_SRM_transition

decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.

Definition at line 6307 of file cv.hpp.

MS_isobaric_label_quantitation_analysis = 1002009

isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.

Definition at line 6310 of file cv.hpp.

MS_TMT_quantitation_analysis = 1002010

TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow.

Definition at line 6313 of file cv.hpp.

MS_desorption_electrospray_ionization = 1002011

desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.

Definition at line 6316 of file cv.hpp.

DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.

Definition at line 6319 of file cv.hpp.

MS_Mascot_PTM_site_assignment_confidence = 1002012

Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).

Definition at line 6322 of file cv.hpp.

MS_collision_energy_ramp_start = 1002013

collision energy ramp start: Collision energy at the start of the collision energy ramp.

Definition at line 6325 of file cv.hpp.

MS_collision_energy_ramp_end = 1002014

collision energy ramp end: Collision energy at the end of the collision energy ramp.

Definition at line 6328 of file cv.hpp.

MS_spectral_count_peptide_level_quantitation = 1002015

spectral count peptide level quantitation: Spectral count peptide level quantitation.

Definition at line 6331 of file cv.hpp.

MS_spectral_count_protein_level_quantitation = 1002016

spectral count protein level quantitation: Spectral count protein level quantitation.

Definition at line 6334 of file cv.hpp.

MS_spectral_count_proteingroup_level_quantitation = 1002017

spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.

Definition at line 6337 of file cv.hpp.

MS_MS1_label_based_analysis = 1002018

MS1 label-based analysis: MS1 label-based analysis.

Definition at line 6340 of file cv.hpp.

MS_label_free_raw_feature_quantitation = 1002019

label-free raw feature quantitation: Label-free raw feature quantitation.

Definition at line 6343 of file cv.hpp.

MS_label_free_peptide_level_quantitation = 1002020

label-free peptide level quantitation: Label-free peptide level quantitation.

Definition at line 6346 of file cv.hpp.

MS_label_free_protein_level_quantitation = 1002021

label-free protein level quantitation: Label-free protein level quantitation.

Definition at line 6349 of file cv.hpp.

MS_label_free_proteingroup_level_quantitation = 1002022

label-free proteingroup level quantitation: Label-free proteingroup level quantitation.

Definition at line 6352 of file cv.hpp.

MS_MS2_tag_based_analysis = 1002023

MS2 tag-based analysis: MS2 tag-based analysis.

Definition at line 6355 of file cv.hpp.

MS_MS2_tag_based_feature_level_quantitation = 1002024

MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.

Definition at line 6358 of file cv.hpp.

MS_MS2_tag_based_peptide_level_quantitation = 1002025

MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.

Definition at line 6361 of file cv.hpp.

MS_MS2_tag_based_protein_level_quantitation = 1002026

MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.

Definition at line 6364 of file cv.hpp.

MS_MS2_tag_based_proteingroup_level_quantitation = 1002027

MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.

Definition at line 6367 of file cv.hpp.

MS_nucleic_acid_base_modification = 1002028

nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).

Definition at line 6370 of file cv.hpp.

MS_original_nucleic_acid_sequence = 1002029

original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.

Definition at line 6373 of file cv.hpp.

MS_modified_nucleic_acid_sequence = 1002030

modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.

Definition at line 6376 of file cv.hpp.

MS_PASSEL_transition_group_browser_URI = 1002031

PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.

Definition at line 6379 of file cv.hpp.

MS_PeptideAtlas_dataset_URI = 1002032

PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.

Definition at line 6382 of file cv.hpp.

MS_contact_role = 1002033

contact role: Role of the contact person.

Definition at line 6385 of file cv.hpp.

MS_first_author = 1002034

first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.

Definition at line 6388 of file cv.hpp.

MS_senior_author = 1002035

senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.

Definition at line 6391 of file cv.hpp.

MS_co_author = 1002036

co-author: One of a set of authors associated with a publication or release.

Definition at line 6394 of file cv.hpp.

MS_dataset_submitter = 1002037

dataset submitter: A person who submits a dataset to a repository.

Definition at line 6397 of file cv.hpp.

MS_unlabeled_sample = 1002038

unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy".

Definition at line 6400 of file cv.hpp.

MS_light_labeled_sample = MS_unlabeled_sample

light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy".

Definition at line 6403 of file cv.hpp.

MS_inlet_attribute = 1002039

inlet attribute: Inlet properties that are associated with a value.

Definition at line 6406 of file cv.hpp.

MS_inlet_temperature = 1002040

inlet temperature: The temperature of the inlet of a mass spectrometer.

Definition at line 6409 of file cv.hpp.

MS_source_temperature = 1002041

source temperature: The temperature of the source of a mass spectrometer.

Definition at line 6412 of file cv.hpp.

MS_modulation_time = 1002042

modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.

Definition at line 6415 of file cv.hpp.

MS_ProteinProspector = 1002043

ProteinProspector: ProteinProspector software for data acquisition and analysis.

Definition at line 6418 of file cv.hpp.

MS_ProteinProspector_score = 1002044

ProteinProspector:score: The ProteinProspector result 'Score'.

Definition at line 6421 of file cv.hpp.

MS_ProteinProspector_expectation_value = 1002045

ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.

Definition at line 6424 of file cv.hpp.

MS_native_source_path = 1002046

native source path: The original source path used for directory-based sources.

Definition at line 6427 of file cv.hpp.

MS_MS_GF = 1002047

MS-GF: MS-GF software used to re-score the peptide-spectrum matches.

Definition at line 6430 of file cv.hpp.

MS_MS_GF_ = 1002048

MS-GF+: MS-GF+ software used to analyze the spectra.

Definition at line 6433 of file cv.hpp.

MS_MS_GFDB = MS_MS_GF_

MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.

Definition at line 6436 of file cv.hpp.

MS_MS_GF_RawScore = 1002049

MS-GF:RawScore: MS-GF raw score.

Definition at line 6439 of file cv.hpp.

MS_MS_GF_DeNovoScore = 1002050

MS-GF:DeNovoScore: MS-GF de novo score.

Definition at line 6442 of file cv.hpp.

MS_MS_GF_Energy = 1002051

MS-GF:Energy: MS-GF energy score.

Definition at line 6445 of file cv.hpp.

MS_MS_GF_SpecEValue = 1002052

MS-GF:SpecEValue: MS-GF spectral E-value.

Definition at line 6448 of file cv.hpp.

MS_MS_GF_EValue = 1002053

MS-GF:EValue: MS-GF E-value.

Definition at line 6451 of file cv.hpp.

MS_MS_GF_QValue = 1002054

MS-GF:QValue: MS-GF Q-value.

Definition at line 6454 of file cv.hpp.

MS_MS_GF_PepQValue = 1002055

MS-GF:PepQValue: MS-GF peptide-level Q-value.

Definition at line 6457 of file cv.hpp.

MS_MS_GF_PEP = 1002056

MS-GF:PEP: MS-GF posterior error probability.

Definition at line 6460 of file cv.hpp.

MS_modification_specificity_protein_N_term = 1002057

modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein.

Definition at line 6463 of file cv.hpp.

MS_modification_specificity_protein_C_term = 1002058

modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein.

Definition at line 6466 of file cv.hpp.

MS_Microsoft_Excel = 1002059

Microsoft Excel: Microsoft Excel (can be used for spectral counting).

Definition at line 6469 of file cv.hpp.

MS_database_UniProtKB_TrEMBL = 1002060

database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.

Definition at line 6472 of file cv.hpp.

MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE = 1002061

decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.

Definition at line 6475 of file cv.hpp.

MS_metabolic_labelling__natural_N__mainly_14N_ = 1002062

metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).

Definition at line 6478 of file cv.hpp.

MS_FindPairs = 1002063

FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.

Definition at line 6481 of file cv.hpp.

MS_peptide_consensus_RT = 1002064

peptide consensus RT: Peptide consensus retention time.

Definition at line 6484 of file cv.hpp.

MS_peptide_consensus_m_z = 1002065

peptide consensus m/z: Peptide consensus mass/charge ratio.

Definition at line 6487 of file cv.hpp.

MS_ratio_calculation_method = 1002066

ratio calculation method: Method used to calculate the ratio.

Definition at line 6490 of file cv.hpp.

MS_protein_value__median_of_peptide_ratios = 1002067

protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios.

Definition at line 6493 of file cv.hpp.

MS_metabolic_labelling__heavy_N__mainly_15N_ = 1002068

metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).

Definition at line 6496 of file cv.hpp.

MS_metabolic_labelling_purity = 1002069

metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape.

Definition at line 6499 of file cv.hpp.

MS_t_test = 1002070

t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.

Definition at line 6502 of file cv.hpp.

MS_ANOVA_test = 1002071

ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.

Definition at line 6505 of file cv.hpp.

MS_p_value = 1002072

p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was.

Definition at line 6508 of file cv.hpp.

MS_mzIdentML_format = 1002073

mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'.

Definition at line 6511 of file cv.hpp.

MS_quantification_file_format = 1002074

quantification file format: File format containing quantification results.

Definition at line 6514 of file cv.hpp.

MS_mzQuantML_format = 1002075

mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'.

Definition at line 6517 of file cv.hpp.

MS_PAnalyzer = 1002076

PAnalyzer: PAnalyzer software for getting protein evidence categories.

Definition at line 6520 of file cv.hpp.

MS_impact = 1002077

impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.

Definition at line 6523 of file cv.hpp.

MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE = 1002078

ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter.

Definition at line 6526 of file cv.hpp.

MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE = 1002079

ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter.

Definition at line 6529 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before = 1002080

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before.

Definition at line 6532 of file cv.hpp.

MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After = 1002081

ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.

Definition at line 6535 of file cv.hpp.

MS_first_column_elution_time = 1002082

first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column.

Definition at line 6538 of file cv.hpp.

MS_second_column_elution_time = 1002083

second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column.

Definition at line 6541 of file cv.hpp.

MS_multidimensional_chromatography_modulation_description = 1002084

multidimensional chromatography modulation description: Multidimensional chromatography modulation description.

Definition at line 6544 of file cv.hpp.

MS_two_dimensional_gas_chromatography_with_fixed_modulation_time = 1002085

two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition.

Definition at line 6547 of file cv.hpp.

MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps = 1002086

two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time.

Definition at line 6550 of file cv.hpp.

MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time = 1002087

two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition.

Definition at line 6553 of file cv.hpp.

MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps = 1002088

two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time.

Definition at line 6556 of file cv.hpp.

MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold = 1002089

ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein.

Definition at line 6559 of file cv.hpp.

MS_Calculate_Probability_Scores = 1002090

Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated.

Definition at line 6562 of file cv.hpp.

MS_ProteomeDiscoverer_Maximum_Delta_Cn = 1002091

ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.

Definition at line 6565 of file cv.hpp.

MS_Percolator_Validation_based_on = 1002092

Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator.

Definition at line 6568 of file cv.hpp.

MS_search_engine_input_parameter = 1002093

search engine input parameter: Search engine input parameter.

Definition at line 6571 of file cv.hpp.

MS_common_search_engine_input_parameter = 1002094

common search engine input parameter: Search engine input parameter that is shared by more than one search engine.

Definition at line 6574 of file cv.hpp.

MS_Mascot_input_parameter = 1002095

Mascot input parameter: Search engine input parameters specific to Mascot.

Definition at line 6577 of file cv.hpp.

MS_SEQUEST_input_parameter = 1002096

SEQUEST input parameter: Search engine input parameters specific to SEQUEST.

Definition at line 6580 of file cv.hpp.

MS_Phenyx_input_parameter = 1002097

Phenyx input parameter: Search engine input parameters specific to Phenyx.

Definition at line 6583 of file cv.hpp.

MS_ProteinExtractor_input_parameter = 1002098

ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.

Definition at line 6586 of file cv.hpp.

MS_OMSSA_input_parameter = 1002099

OMSSA input parameter: Search engine input parameters specific to OMSSA.

Definition at line 6589 of file cv.hpp.

MS_ProteinScape_input_parameter = 1002100

ProteinScape input parameter: Search engine input parameters specific to ProteinScape.

Definition at line 6592 of file cv.hpp.

MS_ProteomeDiscoverer_input_parameter = 1002101

ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.

Definition at line 6595 of file cv.hpp.

MS_software_input_parameter = 1002103

software input parameter: Software input parameters.

Definition at line 6598 of file cv.hpp.

MS_common_software_input_parameter = 1002104

common software input parameter: Software input parameter that is shared by more than one software.

Definition at line 6601 of file cv.hpp.

MS_software_specific_input_parameter = 1002105

software specific input parameter: Software specific input parameter.

Definition at line 6604 of file cv.hpp.

MS_Scaffold_input_parameter = 1002106

Scaffold input parameter: Search engine input parameters specific to Scaffold.

Definition at line 6607 of file cv.hpp.

MS_Percolator_input_parameter = 1002107

Percolator input parameter: Search engine input parameters specific to Percolator.

Definition at line 6610 of file cv.hpp.

MS_higher_score_better = 1002108

higher score better: Indicates that a higher score is better.

Definition at line 6613 of file cv.hpp.

MS_lower_score_better = 1002109

lower score better: Indicates that a lower score is better.

Definition at line 6616 of file cv.hpp.

MS_assay_attribute = 1002110

assay attribute: Attribute describing an assay.

Definition at line 6619 of file cv.hpp.

MS_assay_label_attribute = 1002111

assay label attribute: Attribute describing an assay label.

Definition at line 6622 of file cv.hpp.

MS_protein_group_list_attribute = 1002112

protein group list attribute: Attribute describing a protein group list.

Definition at line 6625 of file cv.hpp.

MS_protein_group_attribute = 1002113

protein group attribute: Attribute describing a protein group.

Definition at line 6628 of file cv.hpp.

MS_protein_list_attribute = 1002114

protein list attribute: Attribute describing a protein list.

Definition at line 6631 of file cv.hpp.

MS_peptide_consensus_list_attribute = 1002115

peptide consensus list attribute: Attribute describing a peptide consensus list.

Definition at line 6634 of file cv.hpp.

MS_peptide_consensus_attribute = 1002116

peptide consensus attribute: Attribute describing a peptide consensus.

Definition at line 6637 of file cv.hpp.

MS_small_molecule_list_attribute = 1002117

small molecule list attribute: Attribute describing a small molecule list.

Definition at line 6640 of file cv.hpp.

MS_small_molecule_attribute = 1002118

small molecule attribute: Attribute describing a small molecule.

Definition at line 6643 of file cv.hpp.

MS_small_molecule_modification_attribute = 1002119

small molecule modification attribute: Attribute describing a small molecule modification.

Definition at line 6646 of file cv.hpp.

MS_experiment_name = 1002120

experiment name: The name for identifying an experiment.

Definition at line 6649 of file cv.hpp.

MS_spectral_count_feature = 1002121

spectral count feature: Dummy decribing a spectral count feature.

Definition at line 6652 of file cv.hpp.

MS_counts_reporting = 1002122

counts reporting: FeatureList of spectral counts.

Definition at line 6655 of file cv.hpp.

MS_x_Tracker = 1002123

x-Tracker: X-Tracker generic tool for quantitative proteomics.

Definition at line 6658 of file cv.hpp.

MS_ProteoSuite = 1002124

ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.

Definition at line 6661 of file cv.hpp.

MS_combined_FDRScore_OBSOLETE = 1002125

combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.

Definition at line 6664 of file cv.hpp.

MS_database_UniProtKB = 1002126

database UniProtKB: The name of the UniProtKB knowledgebase.

Definition at line 6667 of file cv.hpp.

MS_identification_file_attribute = 1002127

identification file attribute: Attribute describing an identification file.

Definition at line 6670 of file cv.hpp.

MS_method_file_format = 1002128

method file format: Attribute describing a method file format.

Definition at line 6673 of file cv.hpp.

MS_ITRAQAnalyzer = 1002129

ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment.

Definition at line 6676 of file cv.hpp.

MS_identification_file_format = 1002130

identification file format: Attribute describing an identification file format.

Definition at line 6679 of file cv.hpp.

MS_TOPP_noise_filter = 1002131

TOPP noise filter: Noise filter component of the TOPP software.

Definition at line 6682 of file cv.hpp.

MS_TOPP_NoiseFilterGaussian = 1002132

TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.

Definition at line 6685 of file cv.hpp.

MS_TOPP_NoiseFilterSGolay = 1002133

TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.

Definition at line 6688 of file cv.hpp.

MS_TOPP_peak_picker = 1002134

TOPP peak picker: Peak picker component of the TOPP software.

Definition at line 6691 of file cv.hpp.

MS_TOPP_PeakPickerHiRes = 1002135

TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.

Definition at line 6694 of file cv.hpp.

MS_TOPP_PeakPickerWavelet = 1002136

TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra.

Definition at line 6697 of file cv.hpp.

MS_TOPP_spectra_filter = 1002137

TOPP spectra filter: Spectra filter component of the TOPP software.

Definition at line 6700 of file cv.hpp.

MS_TOPP_SpectraFilterBernNorm = 1002138

TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.

Definition at line 6703 of file cv.hpp.

MS_TOPP_SpectraFilterMarkerMower = 1002139

TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.

Definition at line 6706 of file cv.hpp.

MS_TOPP_SpectraFilterNLargest = 1002140

TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.

Definition at line 6709 of file cv.hpp.

MS_TOPP_SpectraFilterNormalizer = 1002141

TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.

Definition at line 6712 of file cv.hpp.

MS_TOPP_SpectraFilterParentPeakMower = 1002142

TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.

Definition at line 6715 of file cv.hpp.

MS_TOPP_SpectraFilterScaler = 1002143

TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.

Definition at line 6718 of file cv.hpp.

MS_TOPP_SpectraFilterSqrtMower = 1002144

TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root.

Definition at line 6721 of file cv.hpp.

MS_TOPP_SpectraFilterThresholdMower = 1002145

TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.

Definition at line 6724 of file cv.hpp.

MS_TOPP_SpectraFilterWindowMower = 1002146

TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum.

Definition at line 6727 of file cv.hpp.

MS_TOPP_map_aligner = 1002147

TOPP map aligner: Map aligner component of the TOPP software.

Definition at line 6730 of file cv.hpp.

MS_TOPP_MapAlignerIdentification = 1002148

TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications.

Definition at line 6733 of file cv.hpp.

MS_TOPP_MapAlignerPoseClustering = 1002149

TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach.

Definition at line 6736 of file cv.hpp.

MS_TOPP_MapAlignerSpectrum = 1002150

TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.

Definition at line 6739 of file cv.hpp.

MS_numerator_data_type_attribute = 1002151

numerator data type attribute: Attribute describing the data type of the numerator of a ratio.

Definition at line 6742 of file cv.hpp.

MS_denominator_data_type_attribute = 1002152

denominator data type attribute: Attribute describing the data type of the denominator of a ratio.

Definition at line 6745 of file cv.hpp.

MS_protein_level_PSM_counts = 1002153

protein level PSM counts: The number of spectra identified for this protein in spectral counting.

Definition at line 6748 of file cv.hpp.

MS_TOPP_DTAExtractor = 1002154

TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.

Definition at line 6751 of file cv.hpp.

MS_TOPP_IDMerger = 1002155

TOPP IDMerger: Merges several protein/peptide identification files into one file.

Definition at line 6754 of file cv.hpp.

MS_TOPP_IDFileConverter = 1002156

TOPP IDFileConverter: Converts identification engine file formats.

Definition at line 6757 of file cv.hpp.

MS_TOPP_SpectraMerger = 1002157

TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.

Definition at line 6760 of file cv.hpp.

MS_TOPP_MzTabExporter = 1002158

TOPP MzTabExporter: Exports various XML formats to an mzTab file.

Definition at line 6763 of file cv.hpp.

MS_TOPP_MassTraceExtractor = 1002159

TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.

Definition at line 6766 of file cv.hpp.

MS_TOPP_PrecursorMassCorrector = 1002160

TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.

Definition at line 6769 of file cv.hpp.

MS_TOPP_HighResPrecursorMassCorrector = 1002161

TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data.

Definition at line 6772 of file cv.hpp.

MS_TOPP_AdditiveSeries = 1002162

TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.

Definition at line 6775 of file cv.hpp.

MS_TOPP_Decharger = 1002163

TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.

Definition at line 6778 of file cv.hpp.

MS_TOPP_EICExtractor = 1002164

TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.

Definition at line 6781 of file cv.hpp.

MS_TOPP_feature_finder = 1002165

TOPP feature finder: Feature finder component of the TOPP software.

Definition at line 6784 of file cv.hpp.

MS_TOPP_FeatureFinderCentroided = 1002166

TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.

Definition at line 6787 of file cv.hpp.

MS_TOPP_FeatureFinderRaw = 1002167

TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.

Definition at line 6790 of file cv.hpp.

MS_TOPP_FeatureFinderIsotopeWavelet = 1002168

TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm.

Definition at line 6793 of file cv.hpp.

MS_TOPP_FeatureFinderMetabo = 1002169

TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.

Definition at line 6796 of file cv.hpp.

MS_TOPP_FeatureFinderMRM = 1002170

TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.

Definition at line 6799 of file cv.hpp.

MS_TOPP_ProteinQuantifier = 1002171

TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.

Definition at line 6802 of file cv.hpp.

MS_TOPP_ConsensusMapNormalizer = 1002172

TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).

Definition at line 6805 of file cv.hpp.

MS_TOPP_MapRTTransformer = 1002173

TOPP MapRTTransformer: Applies retention time transformations to maps.

Definition at line 6808 of file cv.hpp.

MS_TOPP_feature_linker = 1002174

TOPP feature linker: Feature linker component of the TOPP software.

Definition at line 6811 of file cv.hpp.

MS_TOPP_FeatureLinkerLabeled = 1002175

TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.

Definition at line 6814 of file cv.hpp.

MS_TOPP_FeatureLinkerUnlabeled = 1002176

TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.

Definition at line 6817 of file cv.hpp.

MS_TOPP_FeatureLinkerUnlabeledQT = 1002177

TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach.

Definition at line 6820 of file cv.hpp.

MS_TOPP_CompNovo = 1002178

TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.

Definition at line 6823 of file cv.hpp.

MS_TOPP_CompNovoCID = 1002179

TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode.

Definition at line 6826 of file cv.hpp.

MS_TOPP_software_adaptor = 1002180

TOPP software adaptor: Software adaptor to an external program in the TOPP software.

Definition at line 6829 of file cv.hpp.

MS_TOPP_InspectAdapter = 1002181

TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.

Definition at line 6832 of file cv.hpp.

MS_TOPP_MascotAdapter = 1002182

TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.

Definition at line 6835 of file cv.hpp.

MS_TOPP_MascotAdapterOnline = 1002183

TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mascot.

Definition at line 6838 of file cv.hpp.

MS_TOPP_OMSSAAdapter = 1002184

TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.

Definition at line 6841 of file cv.hpp.

MS_TOPP_PepNovoAdapter = 1002185

TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.

Definition at line 6844 of file cv.hpp.

MS_TOPP_XTandemAdapter = 1002186

TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.

Definition at line 6847 of file cv.hpp.

MS_TOPP_SpecLibSearcher = 1002187

TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral library.

Definition at line 6850 of file cv.hpp.

MS_TOPP_ConsensusID = 1002188

TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines.

Definition at line 6853 of file cv.hpp.

MS_TOPP_IDConflictResolver = 1002189

TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.

Definition at line 6856 of file cv.hpp.

MS_TOPP_IDFilter = 1002190

TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria.

Definition at line 6859 of file cv.hpp.

MS_TOPP_IDMapper = 1002191

TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.

Definition at line 6862 of file cv.hpp.

MS_TOPP_IDPosteriorErrorProbability = 1002192

TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.

Definition at line 6865 of file cv.hpp.

MS_TOPP_IDRTCalibration = 1002193

TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.

Definition at line 6868 of file cv.hpp.

MS_TOPP_PeptideIndexer = 1002194

TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.

Definition at line 6871 of file cv.hpp.

MS_TOPP_PrecursorIonSelector = 1002195

TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.

Definition at line 6874 of file cv.hpp.

MS_TOPP_MRMMapper = 1002196

TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).

Definition at line 6877 of file cv.hpp.

MS_TOPP_OpenSwath_component = 1002197

TOPP OpenSwath component: OpenSwath component of the TOPP software.

Definition at line 6880 of file cv.hpp.

MS_TOPP_OpenSwathAnalyzer = 1002198

TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.

Definition at line 6883 of file cv.hpp.

MS_TOPP_OpenSwathChromatogramExtractor = 1002199

TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.

Definition at line 6886 of file cv.hpp.

MS_TOPP_OpenSwathDecoyGenerator = 1002200

TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.

Definition at line 6889 of file cv.hpp.

MS_TOPP_OpenSwathFeatureXMLToTSV = 1002201

TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).

Definition at line 6892 of file cv.hpp.

MS_TOPP_OpenSwathRTNormalizer = 1002202

TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space.

Definition at line 6895 of file cv.hpp.

MS_TOPP_ProteinInference = 1002203

TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.

Definition at line 6898 of file cv.hpp.

MS_TOPP_FalseDiscoveryRate = 1002204

TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches.

Definition at line 6901 of file cv.hpp.

MS_ProteoWizard_msconvert = 1002205

ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats.

Definition at line 6904 of file cv.hpp.

MS_ProteoWizard_idconvert = 1002206

ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments.

Definition at line 6907 of file cv.hpp.

MS_ProteoWizard_chainsaw = 1002207

ProteoWizard chainsaw: Filters and processes protein sequence databases.

Definition at line 6910 of file cv.hpp.

MS_ProteoWizard_msaccess = 1002208

ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.

Definition at line 6913 of file cv.hpp.

MS_ProteoWizard_SeeMS = 1002209

ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats.

Definition at line 6916 of file cv.hpp.

MS_IsobariQ = 1002210

IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.

Definition at line 6919 of file cv.hpp.

MS_Variance_stabilizing_normalization = 1002211

Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.

Definition at line 6922 of file cv.hpp.

MS_IPTL_quantitation_analysis = 1002212

IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric.

Definition at line 6925 of file cv.hpp.

MS_PAnalyzer_conclusive_protein = 1002213

PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).

Definition at line 6928 of file cv.hpp.

MS_PAnalyzer_indistinguishable_protein = 1002214

PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum).

Definition at line 6931 of file cv.hpp.

MS_PAnalyzer_non_conclusive_protein = 1002215

PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).

Definition at line 6934 of file cv.hpp.

MS_PAnalyzer_ambiguous_group_member = 1002216

PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).

Definition at line 6937 of file cv.hpp.

MS_decoy_peptide = 1002217

decoy peptide: A putative identified peptide issued from a decoy sequence database.

Definition at line 6940 of file cv.hpp.

MS_percent_collision_energy_ramp_start = 1002218

percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion.

Definition at line 6943 of file cv.hpp.

MS_percent_collision_energy_ramp_end = 1002219

percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion.

Definition at line 6946 of file cv.hpp.

MS_MRMaid = 1002220

MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database.

Definition at line 6949 of file cv.hpp.

MS_MRMaid_peptide_score = 1002221

MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.

Definition at line 6952 of file cv.hpp.

MS_SRM_transition_attribute = 1002222

SRM transition attribute: Attribute associated with a SRM transition.

Definition at line 6955 of file cv.hpp.

MS_precursor_ion_detection_probability = 1002223

precursor ion detection probability: Probability of detecting precursor when parent protein is present.

Definition at line 6958 of file cv.hpp.

MS_product_ion_detection_probability = 1002224

product ion detection probability: Probability of detecting product ion when precursor ion is present.

Definition at line 6961 of file cv.hpp.

MS_average_product_ion_intensity = 1002225

average product ion intensity: Average value of product ion intensity in a collection of identified spectra.

Definition at line 6964 of file cv.hpp.

MS_product_ion_intensity_standard_deviation = 1002226

product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra.

Definition at line 6967 of file cv.hpp.

MS_number_of_product_ion_observations = 1002227

number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments.

Definition at line 6970 of file cv.hpp.

MS_number_of_precursor_ion_observations = 1002228

number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments.

Definition at line 6973 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Significance_Middle = 1002229

ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides.

Definition at line 6976 of file cv.hpp.

MS_ProteomeDiscoverer_Mascot_Significance_High = 1002230

ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides.

Definition at line 6979 of file cv.hpp.

MS_regular_expressions_for_a_GUID = 1002231

).

Definition at line 6982 of file cv.hpp.

Referenced by test().

MS_ProteomeDiscoverer_Default_FDR_calculator = 1002232

ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID).

Definition at line 6985 of file cv.hpp.

MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained = 1002233

ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration.

Definition at line 6988 of file cv.hpp.

MS_selected_precursor_m_z = 1002234

selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.

Definition at line 6991 of file cv.hpp.

MS_ProteoGrouper_PDH_score = 1002235

ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores.

Definition at line 6994 of file cv.hpp.

MS_ProteoGrouper_PAG_score = 1002236

ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides.

Definition at line 6997 of file cv.hpp.

MS_mzidLib = 1002237

mzidLib: A library of Java routines for manipulating mzIdentML files.

Definition at line 7000 of file cv.hpp.

MS_mzidLib_Omssa2Mzid = 1002238

mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.

Definition at line 7003 of file cv.hpp.

MS_mzidLib_Tandem2Mzid = 1002239

mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.

Definition at line 7006 of file cv.hpp.

MS_mzidLib_Csv2Mzid = 1002240

mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.

Definition at line 7009 of file cv.hpp.

MS_mzidLib_ProteoGrouper = 1002241

mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.

Definition at line 7012 of file cv.hpp.

MS_mzidLib_Thresholder = 1002242

mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files.

Definition at line 7015 of file cv.hpp.

MS_mzidLib_Perform_emPAI_on_mzid = 1002243

mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.

Definition at line 7018 of file cv.hpp.

MS_mzidLib_FalseDiscoveryRate = 1002244

mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search.

Definition at line 7021 of file cv.hpp.

MS_mzidLib_Mzidentml2Csv = 1002245

mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.

Definition at line 7024 of file cv.hpp.

MS_mzidLib_CombineSearchEngines = 1002246

mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file.

Definition at line 7027 of file cv.hpp.

MS_mzidLib_InsertMetaDataFromFasta = 1002247

mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files.

Definition at line 7030 of file cv.hpp.

MS_SEQUEST_spscore = 1002248

SEQUEST:spscore: The SEQUEST result 'SpScore'.

Definition at line 7033 of file cv.hpp.

MS_SEQUEST_sprank = 1002249

SEQUEST:sprank: The SEQUEST result 'SpRank'.

Definition at line 7036 of file cv.hpp.

MS_SEQUEST_deltacnstar = 1002250

SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.

Definition at line 7039 of file cv.hpp.

MS_Comet = 1002251

Comet: Comet open-source sequence search engine developed at the University of Washington.

Definition at line 7042 of file cv.hpp.

MS_Comet_xcorr = 1002252

Comet:xcorr: The Comet result 'XCorr'.

Definition at line 7045 of file cv.hpp.

MS_Comet_deltacn = 1002253

Comet:deltacn: The Comet result 'DeltaCn'.

Definition at line 7048 of file cv.hpp.

MS_Comet_deltacnstar = 1002254

Comet:deltacnstar: The Comet result 'DeltaCnStar'.

Definition at line 7051 of file cv.hpp.

MS_Comet_spscore = 1002255

Comet:spscore: The Comet result 'SpScore'.

Definition at line 7054 of file cv.hpp.

MS_Comet_sprank = 1002256

Comet:sprank: The Comet result 'SpRank'.

Definition at line 7057 of file cv.hpp.

MS_Comet_expectation_value = 1002257

Comet:expectation value: The Comet result 'Expectation value'.

Definition at line 7060 of file cv.hpp.

MS_Comet_matched_ions = 1002258

Comet:matched ions: The Comet result 'Matched Ions'.

Definition at line 7063 of file cv.hpp.

MS_Comet_total_ions = 1002259

Comet:total ions: The Comet result 'Total Ions'.

Definition at line 7066 of file cv.hpp.

MS_PSM_FDR_threshold = 1002260

PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.

Definition at line 7069 of file cv.hpp.

MS_Byonic = 1002261

Byonic: Byonic search engine from Protein Metrics.

Definition at line 7072 of file cv.hpp.

MS_Byonic_Score = 1002262

Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct.

Definition at line 7075 of file cv.hpp.

MS_Byonic_Delta_Score = 1002263

Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct.

Definition at line 7078 of file cv.hpp.

MS_Byonic_DeltaMod_Score = 1002264

Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct.

Definition at line 7081 of file cv.hpp.

MS_Byonic_PEP = 1002265

Byonic:PEP: Byonic posterior error probability.

Definition at line 7084 of file cv.hpp.

MS_Byonic_Peptide_LogProb = 1002266

Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism.

Definition at line 7087 of file cv.hpp.

MS_Byonic_Protein_LogProb = 1002267

Byonic:Protein LogProb: The log p-value of the protein.

Definition at line 7090 of file cv.hpp.

MS_Byonic_Best_LogProb = 1002268

Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.

Definition at line 7093 of file cv.hpp.

MS_Byonic_Best_Score = 1002269

Byonic:Best Score: Best (largest) Byonic score of a PSM.

Definition at line 7096 of file cv.hpp.

MS_chromatography_separation = 1002270

chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure.

Definition at line 7099 of file cv.hpp.

MS_liquid_chromatography_separation = 1002271

liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.

Definition at line 7102 of file cv.hpp.

MS_gas_chromatography_separation = 1002272

gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas.

Definition at line 7105 of file cv.hpp.

MS_detector_potential = 1002273

detector potential: Detector potential difference in volts.

Definition at line 7108 of file cv.hpp.

MS_SQ_Detector_2 = 1002274

SQ Detector 2: Waters quadrupole based SQ Detector 2.

Definition at line 7111 of file cv.hpp.

MS_Xevo_G2_S_Tof = 1002275

Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.

Definition at line 7114 of file cv.hpp.

MS_Xevo_G2_S_QTof = 1002276

Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.

Definition at line 7117 of file cv.hpp.

MS_AutoSpec_Premier = 1002277

AutoSpec Premier: Waters AutoSpec Premier.

Definition at line 7120 of file cv.hpp.

MS_Pegasus_III = 1002278

Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.

Definition at line 7123 of file cv.hpp.

MS_maXis_4G = 1002279

maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.

Definition at line 7126 of file cv.hpp.

MS_compact = 1002280

compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.

Definition at line 7129 of file cv.hpp.

MS_SRM_feature_level_quantitation = 1002281

SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.

Definition at line 7132 of file cv.hpp.

MS_SRM_peptide_level_quantitation = 1002282

SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.

Definition at line 7135 of file cv.hpp.

MS_SRM_protein_level_quantitation = 1002283

SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.

Definition at line 7138 of file cv.hpp.

MS_SRM_proteingroup_level_quantitation = 1002284

SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.

Definition at line 7141 of file cv.hpp.

MS_Trans_Proteomic_Pipeline = 1002285

Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.

Definition at line 7144 of file cv.hpp.

TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.

Definition at line 7147 of file cv.hpp.

MS_Trans_Proteomic_Pipeline_software = 1002286

Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline.

Definition at line 7150 of file cv.hpp.

MS_PeptideProphet = 1002287

PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format.

Definition at line 7153 of file cv.hpp.

MS_iProphet = 1002288

iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format.

Definition at line 7156 of file cv.hpp.

MS_ProteinProphet = 1002289

ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format.

Definition at line 7159 of file cv.hpp.

MS_XPRESS = 1002290

XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.

Definition at line 7162 of file cv.hpp.

MS_Libra = 1002291

Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc.

Definition at line 7165 of file cv.hpp.

MS_PTMProphet = 1002292

PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites.

Definition at line 7168 of file cv.hpp.

MS_Bruker_Daltonics_SCION_series = 1002293

Bruker Daltonics SCION series: Bruker Daltonics' SCION series.

Definition at line 7171 of file cv.hpp.

MS_Bruker_Daltonics_EVOQ_series = 1002294

Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.

Definition at line 7174 of file cv.hpp.

MS_SCION_SQ = 1002295

SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.

Definition at line 7177 of file cv.hpp.

MS_SCION_TQ = 1002296

SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.

Definition at line 7180 of file cv.hpp.

MS_EVOQ_Elite = 1002297

EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.

Definition at line 7183 of file cv.hpp.

MS_EVOQ_Qube = 1002298

EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.

Definition at line 7186 of file cv.hpp.

MS_micrOTOF_Q_III = 1002299

micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.

Definition at line 7189 of file cv.hpp.

MS_amaZon_Speed_ETD = 1002300

amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.

Definition at line 7192 of file cv.hpp.

MS_amaZon_Speed = 1002301

amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.

Definition at line 7195 of file cv.hpp.

MS_Bruker_Container_format = 1002302

Bruker Container format: Bruker Container raw file format.

Definition at line 7198 of file cv.hpp.

MS_Bruker_Container_nativeID_format = 1002303

Bruker Container nativeID format: Native identifier (UUID).

Definition at line 7201 of file cv.hpp.

MS_domain_range = 1002304

domain range: Domain range of a numerical value.

Definition at line 7204 of file cv.hpp.

MS_value_between_0_and_1_inclusive = 1002305

value between 0 and 1 inclusive: Value range for probabilities.

Definition at line 7207 of file cv.hpp.

MS_value_greater_than_zero = 1002306

value greater than zero: Positive value range.

Definition at line 7210 of file cv.hpp.

MS_fragmentation_ion_type = 1002307

fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion.

Definition at line 7213 of file cv.hpp.

MS_fluorescence_detector = 1002308

fluorescence detector: A detector using a fluorescent signal after excitation with light.

Definition at line 7216 of file cv.hpp.

MS_Byonic__Peptide_AbsLogProb = 1002309

Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM.

Definition at line 7219 of file cv.hpp.

MS_Byonic__Protein_AbsLogProb = 1002310

Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein.

Definition at line 7222 of file cv.hpp.

MS_Byonic__Peptide_AbsLogProb2D = 1002311

Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information.

Definition at line 7225 of file cv.hpp.

MS_MS_Numpress_linear_prediction_compression = 1002312

MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression.

Definition at line 7228 of file cv.hpp.

MS_MS_Numpress_positive_integer_compression = 1002313

MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.

Definition at line 7231 of file cv.hpp.

MS_MS_Numpress_short_logged_float_compression = 1002314

MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression.

Definition at line 7234 of file cv.hpp.

MS_consensus_result = 1002315

consensus result: Indicates a consensus result from several search engine runs.

Definition at line 7237 of file cv.hpp.

MS_ProteomeDiscoverer_Amanda_high_confidence_threshold = 1002316

ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.

Definition at line 7240 of file cv.hpp.

MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold = 1002317

ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.

Definition at line 7243 of file cv.hpp.

MS_ProteomeDiscoverer_automatic_workload = 1002318

ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.

Definition at line 7246 of file cv.hpp.

MS_Amanda_AmandaScore = 1002319

Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.

Definition at line 7249 of file cv.hpp.

MS_ProteomeDiscoverer_max_differential_modifications = 1002320

ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.

Definition at line 7252 of file cv.hpp.

MS_ProteomeDiscoverer_max_equal_modifications = 1002321

ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.

Definition at line 7255 of file cv.hpp.

MS_ProteomeDiscoverer_min_peptide_length = 1002322

ProteomeDiscoverer:min peptide length: Minimum peptide length.

Definition at line 7258 of file cv.hpp.

MS_ProteomeDiscoverer_max_peptide_length = 1002323

ProteomeDiscoverer:max peptide length: Maximum peptide length.

Definition at line 7261 of file cv.hpp.

MS_ProteomeDiscoverer_max_number_neutral_loss = 1002324

ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.

Definition at line 7264 of file cv.hpp.

MS_ProteomeDiscoverer_max_number_neutral_loss_modifications = 1002325

ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications.

Definition at line 7267 of file cv.hpp.

MS_ProteomeDiscoverer_use_flanking_ions = 1002326

ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.

Definition at line 7270 of file cv.hpp.

MS_ProteomeDiscoverer_max_number_of_same_modifs = 1002327

ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM.

Definition at line 7273 of file cv.hpp.

MS_ProteomeDiscoverer_perform_deisotoping = 1002328

ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.

Definition at line 7276 of file cv.hpp.

MS_ProteomeDiscoverer_ion_settings = 1002329

ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.

Definition at line 7279 of file cv.hpp.

MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE = 1002330

ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter.

Definition at line 7282 of file cv.hpp.

MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE = 1002331

ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter.

Definition at line 7285 of file cv.hpp.

MS_lab_head = 1002332

lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group.

Definition at line 7288 of file cv.hpp.

MS_conversion_software = 1002333

conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process.

Definition at line 7291 of file cv.hpp.

MS_ProCon = 1002334

ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML.

Definition at line 7294 of file cv.hpp.

MS_PRIDE_Converter2 = 1002335

PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML.

Definition at line 7297 of file cv.hpp.

MS_Amanda = 1002336

Amanda: Amanda scoring system for PSM identification.

Definition at line 7300 of file cv.hpp.

MS_Andromeda = 1002337

Andromeda: Andromeda is a peptide search engine.

Definition at line 7303 of file cv.hpp.

MS_Andromeda_score = 1002338

Andromeda:score: The probability based score of the Andromeda search engine.

Definition at line 7306 of file cv.hpp.

MS_site_global_FDR = 1002339

site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification.

Definition at line 7309 of file cv.hpp.

MS_ProteomeXchange_project_tag = 1002340

ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project.

Definition at line 7312 of file cv.hpp.

MS_second_pass_peptide_identification = 1002341

second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search.

Definition at line 7315 of file cv.hpp.

MS_MZmine = 1002342

MZmine: A framework for differential analysis of mass spectrometry data.

Definition at line 7318 of file cv.hpp.

MS_ion_stability_type_OBSOLETE = 1002343

ion stability type: Stability type of the ion.

Definition at line 7321 of file cv.hpp.

MS_Maltcms = 1002344

Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers.

Definition at line 7324 of file cv.hpp.

MS_PSM_level_attribute = 1002345

PSM-level attribute: Attribute of a single peptide-spectrum match.

Definition at line 7327 of file cv.hpp.

MS_protein_group_level_identification_attribute = 1002346

protein group-level identification attribute: Protein group level information.

Definition at line 7330 of file cv.hpp.

MS_PSM_level_identification_statistic = 1002347

PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.

Definition at line 7333 of file cv.hpp.

MS_protein_group_level_identification_statistic = 1002348

protein group-level identification statistic: Identification confidence metric for a protein group.

Definition at line 7336 of file cv.hpp.

MS_value_greater_than_zero_but_less_than_or_equal_to_one = 1002349

value greater than zero but less than or equal to one: Positive value range less than or equal to 1.

Definition at line 7339 of file cv.hpp.

MS_PSM_level_global_FDR = 1002350

PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.

Definition at line 7342 of file cv.hpp.

MS_PSM_level_local_FDR = 1002351

PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.

Definition at line 7345 of file cv.hpp.

MS_PSM_level_p_value = 1002352

PSM-level p-value: Estimation of the p-value for peptide spectrum matches.

Definition at line 7348 of file cv.hpp.

MS_PSM_level_e_value = 1002353

PSM-level e-value: Estimation of the e-value for peptide spectrum matches.

Definition at line 7351 of file cv.hpp.

MS_PSM_level_q_value = 1002354

PSM-level q-value: Estimation of the q-value for peptide spectrum matches.

Definition at line 7354 of file cv.hpp.

MS_PSM_level_FDRScore = 1002355

PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.

Definition at line 7357 of file cv.hpp.

MS_PSM_level_combined_FDRScore = 1002356

PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.

Definition at line 7360 of file cv.hpp.

MS_PSM_level_probability = 1002357

PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.

Definition at line 7363 of file cv.hpp.

MS_search_engine_specific_peptide_sequence_level_identification_statistic = 1002358

search engine specific peptide sequence-level identification statistic: Search engine specific distinct peptide score.

Definition at line 7366 of file cv.hpp.

MS_peptide_sequence_level_local_FDR = 1002359

peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 7369 of file cv.hpp.

MS_distinct_peptide_level_FDRScore = 1002360

distinct peptide-level FDRScore: mzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 7372 of file cv.hpp.

MS_distinct_peptide_level_combined_FDRScore = 1002361

distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.

Definition at line 7375 of file cv.hpp.

MS_peptide_sequence_level_probability = 1002362

peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.

Definition at line 7378 of file cv.hpp.

MS_search_engine_specific_score_for_proteins = 1002363

search engine specific score for proteins: Search engine specific protein scores.

Definition at line 7381 of file cv.hpp.

MS_protein_level_local_FDR = 1002364

protein-level local FDR: Estimation of the local false discovery rate of proteins.

Definition at line 7384 of file cv.hpp.

MS_FDRScore_for_proteins = 1002365

FDRScore for proteins: mzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.

Definition at line 7387 of file cv.hpp.

MS_combined_FDRScore_for_proteins = 1002366

combined FDRScore for proteins: mzidLibrary Combined FDRScore for proteins.

Definition at line 7390 of file cv.hpp.

MS_probability_for_proteins = 1002367

probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.

Definition at line 7393 of file cv.hpp.

MS_search_engine_specific_score_for_protein_groups = 1002368

search engine specific score for protein groups: Search engine specific protein group scores.

Definition at line 7396 of file cv.hpp.

MS_protein_group_level_global_FDR = 1002369

protein group-level global FDR: Estimation of the global false discovery rate of protein groups.

Definition at line 7399 of file cv.hpp.

MS_protein_group_level_local_FDR = 1002370

protein group-level local FDR: Estimation of the local false discovery rate of protein groups.

Definition at line 7402 of file cv.hpp.

MS_protein_group_level_p_value = 1002371

protein group-level p-value: Estimation of the p-value for protein groups.

Definition at line 7405 of file cv.hpp.

MS_protein_group_level_e_value = 1002372

protein group-level e-value: Estimation of the e-value for protein groups.

Definition at line 7408 of file cv.hpp.

MS_protein_group_level_q_value = 1002373

protein group-level q-value: Estimation of the q-value for protein groups.

Definition at line 7411 of file cv.hpp.

MS_protein_group_level_FDRScore = 1002374

protein group-level FDRScore: mzidLibrary FDRScore for protein groups.

Definition at line 7414 of file cv.hpp.

MS_protein_group_level_combined_FDRScore = 1002375

protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.

Definition at line 7417 of file cv.hpp.

MS_protein_group_level_probability = 1002376

protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.

Definition at line 7420 of file cv.hpp.

MS_ProteomeDiscoverer_Relaxed_Score_Threshold = 1002377

ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.

Definition at line 7423 of file cv.hpp.

MS_ProteomeDiscoverer_Strict_Score_Threshold = 1002378

ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.

Definition at line 7426 of file cv.hpp.

MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score = 1002379

ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein.

Definition at line 7429 of file cv.hpp.

MS_false_localization_rate = 1002380

false localization rate: Estimation of the false localization rate for modification site assignment.

Definition at line 7432 of file cv.hpp.

MS_MALDI_Solutions_LC_MALDI = 1002381

MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.

Definition at line 7435 of file cv.hpp.

MS_Shimadzu_MALDI_7090 = 1002382

Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.

Definition at line 7438 of file cv.hpp.

MS_SCiLS_software = 1002383

SCiLS software: SCiLS software for data acquisition and analysis.

Definition at line 7441 of file cv.hpp.

MS_SCiLS_Lab = 1002384

SCiLS Lab: SCiLS Lab software.

Definition at line 7444 of file cv.hpp.

MS_SCiLS_Lab_format = 1002385

SCiLS Lab format: SCiLS Lab file format.

Definition at line 7447 of file cv.hpp.

MS_preprocessing_software = 1002386

preprocessing software: Preprocessing software.

Definition at line 7450 of file cv.hpp.

MS_PIA = 1002387

PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.

Definition at line 7453 of file cv.hpp.

MS_PIA_XML_format = 1002388

PIA XML format: A compilation of search engine results in the PIA XML format.

Definition at line 7456 of file cv.hpp.

MS_PIA_workflow_parameter = 1002389

PIA workflow parameter: A parameter set for a single PIA analysis.

Definition at line 7459 of file cv.hpp.

MS_PIA_FDRScore_calculated = 1002390

PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.

Definition at line 7462 of file cv.hpp.

MS_PIA_Combined_FDRScore_calculated = 1002391

PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation.

Definition at line 7465 of file cv.hpp.

MS_PIA_PSM_sets_created = 1002392

PIA:PSM sets created: Indicates whether PSM sets were created.

Definition at line 7468 of file cv.hpp.

MS_PIA_used_top_identifications_for_FDR = 1002393

PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all.

Definition at line 7471 of file cv.hpp.

MS_PIA_protein_score = 1002394

PIA:protein score: The score given to a protein by any protein inference.

Definition at line 7474 of file cv.hpp.

MS_PIA_protein_inference = 1002395

PIA:protein inference: The used algorithm for the protein inference using PIA.

Definition at line 7477 of file cv.hpp.

MS_PIA_protein_inference_filter = 1002396

PIA:protein inference filter: A filter used by PIA for the protein inference.

Definition at line 7480 of file cv.hpp.

MS_PIA_protein_inference_scoring = 1002397

PIA:protein inference scoring: The used scoring method for the protein inference using PIA.

Definition at line 7483 of file cv.hpp.

MS_PIA_protein_inference_used_score = 1002398

PIA:protein inference used score: The used base score for the protein inference using PIA.

Definition at line 7486 of file cv.hpp.

MS_PIA_protein_inference_used_PSMs = 1002399

PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference.

Definition at line 7489 of file cv.hpp.

MS_PIA_filter = 1002400

PIA:filter: A filter used for the report generation.

Definition at line 7492 of file cv.hpp.

MS_leading_protein = 1002401

leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members.

Definition at line 7495 of file cv.hpp.

MS_non_leading_protein = 1002402

non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence.

Definition at line 7498 of file cv.hpp.

MS_group_representative = 1002403

group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative.

Definition at line 7501 of file cv.hpp.

MS_count_of_identified_proteins = 1002404

count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file.

Definition at line 7504 of file cv.hpp.

MS_protein_group_level_result_list_attribute = 1002405

protein group-level result list attribute: Details describing a protein cluster.

Definition at line 7507 of file cv.hpp.

MS_count_of_identified_clusters = 1002406

count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.

Definition at line 7510 of file cv.hpp.

MS_cluster_identifier = 1002407

cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides.

Definition at line 7513 of file cv.hpp.

MS_number_of_distinct_protein_sequences = 1002408

number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.

Definition at line 7516 of file cv.hpp.

MS_marginally_distinguished_protein = 1002409

marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group.

Definition at line 7519 of file cv.hpp.

MS_Anubis = 1002410

Anubis: Anubis software for selected reaction monitoring data.

Definition at line 7522 of file cv.hpp.

MS_TraML_format = 1002411

TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'.

Definition at line 7525 of file cv.hpp.

MS_total_XIC_area = 1002412

total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM).

Definition at line 7528 of file cv.hpp.

MS_product_background = 1002413

product background: The background area for the quantified transition.

Definition at line 7531 of file cv.hpp.

MS_postprocessing_software = 1002414

postprocessing software: Postprocessing software.

Definition at line 7534 of file cv.hpp.

MS_protein_group_passes_threshold = 1002415

protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file.

Definition at line 7537 of file cv.hpp.

MS_Orbitrap_Fusion = 1002416

Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.

Definition at line 7540 of file cv.hpp.

MS_Orbitrap_Fusion_ETD = 1002417

Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.

Definition at line 7543 of file cv.hpp.

MS_TSQ_Quantiva = 1002418

TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.

Definition at line 7546 of file cv.hpp.

MS_TSQ_Endura = 1002419

TSQ Endura: Thermo Scientific TSQ Endura MS.

Definition at line 7549 of file cv.hpp.

MS_PASSEL_experiment_URI = 1002420

PASSEL experiment URI: URI that allows access to a PASSEL experiment.

Definition at line 7552 of file cv.hpp.

MS_Paragon_input_parameter = 1002421

Paragon input parameter: Search engine input parameters specific to Paragon.

Definition at line 7555 of file cv.hpp.

MS_Paragon__sample_type = 1002422

Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation.

Definition at line 7558 of file cv.hpp.

MS_Paragon__cysteine_alkylation = 1002423

Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation.

Definition at line 7561 of file cv.hpp.

MS_Paragon__instrument_setting = 1002424

Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument.

Definition at line 7564 of file cv.hpp.

MS_Paragon__search_effort = 1002425

Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search.

Definition at line 7567 of file cv.hpp.

MS_Paragon__ID_focus = 1002426

Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions.

Definition at line 7570 of file cv.hpp.

MS_Paragon__FDR_analysis = 1002427

Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.

Definition at line 7573 of file cv.hpp.

MS_Paragon__quantitation = 1002428

Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted.

Definition at line 7576 of file cv.hpp.

MS_Paragon__background_correction = 1002429

Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples.

Definition at line 7579 of file cv.hpp.

MS_Paragon__bias_correction = 1002430

Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity.

Definition at line 7582 of file cv.hpp.

MS_Paragon__channel_to_use_as_denominator_in_ratios = 1002431

Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios.

Definition at line 7585 of file cv.hpp.

MS_search_engine_specific_input_metadata = 1002432

search engine specific input metadata: Search engine specific metadata that are not user-controlled settings.

Definition at line 7588 of file cv.hpp.

MS_Paragon__modified_data_dictionary_or_parameter_translation = 1002433

Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result.

Definition at line 7591 of file cv.hpp.

MS_number_of_spectra_searched = 1002434

number of spectra searched: Number of spectra in a search.

Definition at line 7594 of file cv.hpp.

MS_data_processing_start_time = 1002435

data processing start time: The time that a data processing action was started.

Definition at line 7597 of file cv.hpp.

MS_Paragon__digestion = 1002436

Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done.

Definition at line 7600 of file cv.hpp.

MS_number_of_decoy_sequences = 1002437

number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used.

Definition at line 7603 of file cv.hpp.

MS_spectrum_identification_list_result_details = 1002438

spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList).

Definition at line 7606 of file cv.hpp.

MS_final_PSM_list = 1002439

final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult.

Definition at line 7609 of file cv.hpp.

MS_intermediate_PSM_list = 1002440

intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult.

Definition at line 7612 of file cv.hpp.

MS_Andi_MS_format = 1002441

Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.

Definition at line 7615 of file cv.hpp.

MS_chromatograph_file_format = 1002442

chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.

Definition at line 7618 of file cv.hpp.

MS_Andi_CHROM_format = 1002443

Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.

Definition at line 7621 of file cv.hpp.

MS_6420_Triple_Quadrupole_LC_MS = 1002444

6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.

Definition at line 7624 of file cv.hpp.

MS_6460_Triple_Quadrupole_LC_MS = 1002445

6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity.

Definition at line 7627 of file cv.hpp.

MS_6490_Triple_Quadrupole_LC_MS = 1002446

6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity.

Definition at line 7630 of file cv.hpp.

MS_Paragon_special_factor = 1002447

Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects.

Definition at line 7633 of file cv.hpp.

MS_PEAKS_inChorusPeptideScore = 1002448

PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.

Definition at line 7636 of file cv.hpp.

MS_PEAKS_inChorusProteinScore = 1002449

PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.

Definition at line 7639 of file cv.hpp.

MS_param__b_ion_H3PO4_DEPRECATED = 1002450

param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.

Definition at line 7642 of file cv.hpp.

MS_param__y_ion_H3PO4_DEPRECATED = 1002451

param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.

Definition at line 7645 of file cv.hpp.

MS_Maui = 1002452

Maui: The Maltcms Graphical User Interface.

Definition at line 7648 of file cv.hpp.

MS_No_fixed_modifications_searched = 1002453

No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported.

Definition at line 7651 of file cv.hpp.

MS_No_variable_modifications_searched = 1002454

No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported.

Definition at line 7654 of file cv.hpp.

MS_H2O_neutral_loss_OBSOLETE = 1002455

H2O neutral loss: Neutral loss of water.

Definition at line 7657 of file cv.hpp.

MS_NH3_neutral_loss_OBSOLETE = 1002456

NH3 neutral loss: Neutral loss of ammonia.

Definition at line 7660 of file cv.hpp.

MS_H3PO4_neutral_loss_OBSOLETE = 1002457

H3PO4 neutral loss: Neutral loss of phosphoric acid.

Definition at line 7663 of file cv.hpp.

MS_PeptideShaker = 1002458

PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results.

Definition at line 7666 of file cv.hpp.

MS_MS_Amanda_csv_format = 1002459

MS Amanda csv format: MS Amanda csv output format.

Definition at line 7669 of file cv.hpp.

MS_protein_group_level_global_FNR = 1002460

protein group-level global FNR: Estimation of the global false negative rate of protein groups.

Definition at line 7672 of file cv.hpp.

MS_protein_group_level_confidence = 1002461

protein group-level confidence: Estimation of the global confidence of protein groups.

Definition at line 7675 of file cv.hpp.

MS_peptide_sequence_level_global_FNR = 1002462

peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 7678 of file cv.hpp.

MS_peptide_sequence_level_global_confidence = 1002463

peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).

Definition at line 7681 of file cv.hpp.

MS_PSM_level_global_FNR = 1002464

PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.

Definition at line 7684 of file cv.hpp.

MS_PSM_level_global_confidence = 1002465

PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.

Definition at line 7687 of file cv.hpp.

MS_PeptideShaker_PSM_score = 1002466

PeptideShaker PSM score: The probability based PeptideShaker PSM score.

Definition at line 7690 of file cv.hpp.

MS_PeptideShaker_PSM_confidence = 1002467

PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.

Definition at line 7693 of file cv.hpp.

MS_PeptideShaker_peptide_score = 1002468

PeptideShaker peptide score: The probability based PeptideShaker peptide score.

Definition at line 7696 of file cv.hpp.

MS_PeptideShaker_peptide_confidence = 1002469

PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.

Definition at line 7699 of file cv.hpp.

MS_PeptideShaker_protein_group_score = 1002470

PeptideShaker protein group score: The probability based PeptideShaker protein group score.

Definition at line 7702 of file cv.hpp.

MS_PeptideShaker_protein_group_confidence = 1002471

PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.

Definition at line 7705 of file cv.hpp.

MS_trap_type_collision_induced_dissociation = 1002472

trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell.

Definition at line 7708 of file cv.hpp.

MS_ion_series_considered_in_search = 1002473

ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.

Definition at line 7711 of file cv.hpp.

MS_ProteoAnnotator_non_canonical_gene_model_score = 1002474

ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group.

Definition at line 7714 of file cv.hpp.

MS_ProteoAnnotator_count_alternative_peptides = 1002475

ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group.

Definition at line 7717 of file cv.hpp.

MS_ion_mobility_drift_time = 1002476

ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated.

Definition at line 7720 of file cv.hpp.

MS_mean_drift_time_array = 1002477

mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.

Definition at line 7723 of file cv.hpp.

MS_mean_charge_array = 1002478

mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.

Definition at line 7726 of file cv.hpp.

MS_regular_expression = 1002479

regular expression: Regular expression.

Definition at line 7729 of file cv.hpp.

MS_regular_expression_for_a_digital_object_identifier__DOI_ = 1002480

(?:[.][0-9]+)*/(?:(?!["&\'<>])[^ \r
\v\f])+)

Definition at line 7732 of file cv.hpp.

MS_higher_energy_beam_type_collision_induced_dissociation = 1002481

higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.

Definition at line 7735 of file cv.hpp.

MS_statistical_threshold = 1002482

statistical threshold: Estimated statistical threshold.

Definition at line 7738 of file cv.hpp.

MS_PSM_level_statistical_threshold = 1002483

PSM-level statistical threshold: Estimated statistical threshold at PSM-level.

Definition at line 7741 of file cv.hpp.

MS_peptide_level_statistical_threshold = 1002484

peptide-level statistical threshold: Estimated statistical threshold at peptide-level.

Definition at line 7744 of file cv.hpp.

MS_protein_level_statistical_threshold = 1002485

protein-level statistical threshold: Estimated statistical threshold at protein-level.

Definition at line 7747 of file cv.hpp.

MS_protein_group_level_statistical_threshold = 1002486

protein group-level statistical threshold: Estimated statistical threshold at protein group-level.

Definition at line 7750 of file cv.hpp.

MS_MassIVE_dataset_identifier = 1002487

MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.

Definition at line 7753 of file cv.hpp.

MS_MassIVE_dataset_URI = 1002488

MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.

Definition at line 7756 of file cv.hpp.

MS_special_processing = 1002489

special processing: Details describing a special processing.

Definition at line 7759 of file cv.hpp.

MS_peptide_level_scoring = 1002490

peptide-level scoring: Peptide-level scoring performed.

Definition at line 7762 of file cv.hpp.

MS_modification_localization_scoring = 1002491

modification localization scoring: Modification localization scoring performed.

Definition at line 7765 of file cv.hpp.

MS_consensus_scoring = 1002492

consensus scoring: Consensus multiple search engine approach performed.

Definition at line 7768 of file cv.hpp.

MS_sample_pre_fractionation = 1002493

sample pre-fractionation: Sample pre-fractionation performed.

Definition at line 7771 of file cv.hpp.

MS_cross_linking_search = 1002494

cross-linking search: Cross-linking search performed.

Definition at line 7774 of file cv.hpp.

MS_no_special_processing = 1002495

no special processing: No special processing performed.

Definition at line 7777 of file cv.hpp.

MS_group_PSMs_by_sequence = 1002496

group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.

Definition at line 7780 of file cv.hpp.

MS_group_PSMs_by_sequence_with_modifications = 1002497

group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account.

Definition at line 7783 of file cv.hpp.

MS_group_PSMs_by_sequence_with_modifications_and_charge = 1002498

group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account.

Definition at line 7786 of file cv.hpp.

MS_peptide_level_score_OBSOLETE = 1002499

peptide level score: Peptide level score.

Definition at line 7789 of file cv.hpp.

MS_peptide_passes_threshold = 1002500

peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file.

Definition at line 7792 of file cv.hpp.

MS_no_PSM_threshold = 1002501

no PSM threshold: Indicating that no PSM threshold was used.

Definition at line 7795 of file cv.hpp.

MS_no_peptide_level_threshold = 1002502

no peptide-level threshold: Indicating that no peptide-level threshold was used.

Definition at line 7798 of file cv.hpp.

MS_PSM_is_used_for_peptide_level_scoring = 1002503

PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.

Definition at line 7801 of file cv.hpp.

MS_modification_index = 1002504

modification index: The order of modifications to be referenced elsewhere in the document.

Definition at line 7804 of file cv.hpp.

MS_regular_expression_for_modification_localization_scoring = 1002505

)

Definition at line 7807 of file cv.hpp.

MS_modification_position_score = 1002506

modification position score: Modification position score.

Definition at line 7810 of file cv.hpp.

MS_modification_rescoring_false_localization_rate = 1002507

modification rescoring:false localization rate: Mod position score: false localization rate.

Definition at line 7813 of file cv.hpp.

MS_cross_linking_attribute = 1002508

cross-linking attribute: Cross-linking attribute.

Definition at line 7816 of file cv.hpp.

MS_cross_link_donor = 1002509

cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.

Definition at line 7819 of file cv.hpp.

MS_cross_link_acceptor = 1002510

cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.

Definition at line 7822 of file cv.hpp.

MS_cross_link_spectrum_identification_item = 1002511

cross-link spectrum identification item: Cross-linked spectrum identification item.

Definition at line 7825 of file cv.hpp.

MS_cross_linking_score = 1002512

cross-linking score: Cross-linking scoring value.

Definition at line 7828 of file cv.hpp.

MS_molecules_per_cell = 1002513

molecules per cell: The absolute abundance of protein in a cell.

Definition at line 7831 of file cv.hpp.

MS_absolute_quantitation_analysis = 1002514

absolute quantitation analysis: Absolute quantitation analysis.

Definition at line 7834 of file cv.hpp.

MS_internal_peptide_reference_used = 1002515

internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis.

Definition at line 7837 of file cv.hpp.

MS_internal_protein_reference_used = 1002516

internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis.

Definition at line 7840 of file cv.hpp.

MS_internal_reference_abundance = 1002517

internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis.

Definition at line 7843 of file cv.hpp.

MS_Progenesis_protein_group_normalised_abundance = 1002518

Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS.

Definition at line 7846 of file cv.hpp.

MS_Progenesis_protein_group_raw_abundance = 1002519

Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS.

Definition at line 7849 of file cv.hpp.

MS_peptide_group_ID = 1002520

peptide group ID: Peptide group identifier for peptide-level stats.

Definition at line 7852 of file cv.hpp.

MS_mass_spectrometry_imaging = 1002521

mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position.

Definition at line 7855 of file cv.hpp.

MS_ProteomeDiscoverer_1__Static_Terminal_Modification = 1002522

ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational modifications (PTMs).

Definition at line 7858 of file cv.hpp.

MS_Q_Exactive_HF = 1002523

Q Exactive HF: Thermo Scientific Q Exactive.

Definition at line 7861 of file cv.hpp.

MS_PepFinder = 1002524

PepFinder: Thermo Scientific PepFinder BioPharma analysis software.

Definition at line 7864 of file cv.hpp.

MS_TSQ_8000_Evo = 1002525

TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.

Definition at line 7867 of file cv.hpp.

MS_Exactive_Plus = 1002526

Exactive Plus: Thermo Scientific Exactive Plus MS.

Definition at line 7870 of file cv.hpp.

MS_instrument_specific_scan_attribute = 1002527

instrument specific scan attribute: Instrument specific scan properties that are associated with a value.

Definition at line 7873 of file cv.hpp.

MS_synchronous_prefilter_selection = 1002528

synchronous prefilter selection: Synchronous prefilter selection.

Definition at line 7876 of file cv.hpp.

SPS (synchronous prefilter selection): Synchronous prefilter selection.

Definition at line 7879 of file cv.hpp.

MS_resolution_array = 1002529

resolution array: A data array of resolution values.

Definition at line 7882 of file cv.hpp.

MS_baseline_array = 1002530

baseline array: A data array of signal baseline values (the signal in the absence of analytes).

Definition at line 7885 of file cv.hpp.

MS_UIMF_format = 1002531

UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data.

Definition at line 7888 of file cv.hpp.

MS_UIMF_nativeID_format = 1002532

UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger.

Definition at line 7891 of file cv.hpp.

MS_TripleTOF_6600 = 1002533

TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.

Definition at line 7894 of file cv.hpp.

MS_ProLuCID_xcorr = 1002534

ProLuCID:xcorr: The ProLuCID result 'XCorr'.

Definition at line 7897 of file cv.hpp.

MS_ProLuCID_deltacn = 1002535

ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.

Definition at line 7900 of file cv.hpp.

MS_D_Score = 1002536

D-Score: D-Score for PTM site location at the PSM-level.

Definition at line 7903 of file cv.hpp.

MS_MD_Score = 1002537

MD-Score: MD-Score for PTM site location at the PSM-level.

Definition at line 7906 of file cv.hpp.

MS_PTM_localization_confidence_metric = 1002538

PTM localization confidence metric: Localization confidence metric for a post translational modification (PTM).

Definition at line 7909 of file cv.hpp.

MS_PeptideShaker_PTM_confidence_type = 1002539

PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizations.

Definition at line 7912 of file cv.hpp.

MS_PeptideShaker_PSM_confidence_type = 1002540

PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.

Definition at line 7915 of file cv.hpp.

MS_PeptideShaker_peptide_confidence_type = 1002541

PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide identifications.

Definition at line 7918 of file cv.hpp.

MS_PeptideShaker_protein_confidence_type = 1002542

PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein identifications.

Definition at line 7921 of file cv.hpp.

MS_xiFDR = 1002543

xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.

Definition at line 7924 of file cv.hpp.

MS_xi = 1002544

xi: Search engine for cross-linked peptides.

Definition at line 7927 of file cv.hpp.

MS_xi_score = 1002545

xi:score: The xi result 'Score'.

Definition at line 7930 of file cv.hpp.

MS_Skyline_mzQuantML_converter = 1002546

Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.

Definition at line 7933 of file cv.hpp.

MS_normalized_spectral_abundance_factor = 1002547

normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).

Definition at line 7936 of file cv.hpp.

MS_distributed_normalized_spectral_abundance_factor = 1002548

distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor (dNSAF.

Definition at line 7939 of file cv.hpp.

MS_PTM_localization_distinct_peptide_level_statistic = 1002549

PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence.

Definition at line 7942 of file cv.hpp.

MS_peptide_phosphoRS_score = 1002550

peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.

Definition at line 7945 of file cv.hpp.

MS_peptide_Ascore = 1002551

peptide:Ascore: A-score for PTM site location at the peptide-level.

Definition at line 7948 of file cv.hpp.

MS_peptide_H_Score = 1002552

peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.

Definition at line 7951 of file cv.hpp.

MS_peptide_D_Score = 1002553

peptide:D-Score: D-Score for PTM site location at the peptide-level.

Definition at line 7954 of file cv.hpp.

MS_peptide_MD_Score = 1002554

peptide:MD-Score: MD-Score for PTM site location at the peptide-level.

Definition at line 7957 of file cv.hpp.

MS_PTM_localization_score_threshold = 1002555

PTM localization score threshold: Threshold for PTM site location score.

Definition at line 7960 of file cv.hpp.

MS_Ascore_threshold = 1002556

Ascore threshold: Threshold for Ascore PTM site location score.

Definition at line 7963 of file cv.hpp.

MS_D_Score_threshold = 1002557

D-Score threshold: Threshold for D-score PTM site location score.

Definition at line 7966 of file cv.hpp.

MS_MD_Score_threshold = 1002558

MD-Score threshold: Threshold for MD-score PTM site location score.

Definition at line 7969 of file cv.hpp.

MS_H_Score_threshold = 1002559

H-Score threshold: Threshold for H-score PTM site location score.

Definition at line 7972 of file cv.hpp.

MS_DeBunker_score_threshold = 1002560

DeBunker:score threshold: Threshold for DeBunker PTM site location score.

Definition at line 7975 of file cv.hpp.

MS_Mascot_PTM_site_assignment_confidence_threshold = 1002561

Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.

Definition at line 7978 of file cv.hpp.

MS_MSQuant_PTM_score_threshold = 1002562

MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.

Definition at line 7981 of file cv.hpp.

MS_MaxQuant_PTM_Score_threshold = 1002563

MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.

Definition at line 7984 of file cv.hpp.

MS_MaxQuant_P_site_localization_probability_threshold = 1002564

MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probability.

Definition at line 7987 of file cv.hpp.

MS_MaxQuant_PTM_Delta_Score_threshold = 1002565

MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.

Definition at line 7990 of file cv.hpp.

MS_MaxQuant_Phospho__STY__Probabilities_threshold = 1002566

MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.

Definition at line 7993 of file cv.hpp.

MS_phosphoRS_score_threshold = 1002567

phosphoRS score threshold: Threshold for phosphoRS score.

Definition at line 7996 of file cv.hpp.

MS_phosphoRS_site_probability_threshold = 1002568

phosphoRS site probability threshold: Threshold for phosphoRS site probability.

Definition at line 7999 of file cv.hpp.

MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once = 1002569

ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a ProteomeDiscoverer search.

Definition at line 8002 of file cv.hpp.

MS_sequence_multiply_subsumable_protein = 1002570

sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group.

Definition at line 8005 of file cv.hpp.

MS_spectrum_multiply_subsumable_protein = 1002571

spectrum multiply subsumable protein: A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group.

Definition at line 8008 of file cv.hpp.

MS_protein_detection_statistical_threshold = 1002572

protein detection statistical threshold: Estimated statistical threshold used for protein detection.

Definition at line 8011 of file cv.hpp.

MS_spectrum_identification_statistical_threshold = 1002573

spectrum identification statistical threshold: Estimated statistical threshold used for spectrum identification.

Definition at line 8014 of file cv.hpp.

MS_ASAPRatio = 1002574

ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.

Definition at line 8017 of file cv.hpp.

MS_Tide = 1002575

Tide: Tide open-source sequence search program developed at the University of Washington.

Definition at line 8020 of file cv.hpp.

MS_Andromeda_result_file = 1002576

Andromeda result file: Andromeda result file output format.

Definition at line 8023 of file cv.hpp.

MS_2000_QTRAP = 1002577

2000 QTRAP: SCIEX 2000 QTRAP.

Definition at line 8026 of file cv.hpp.

MS_2500_QTRAP = 1002578

2500 QTRAP: SCIEX 2500 QTRAP.

Definition at line 8029 of file cv.hpp.

MS_3500_QTRAP = 1002579

3500 QTRAP: SCIEX 3500 QTRAP.

Definition at line 8032 of file cv.hpp.

MS_QTRAP_4500 = 1002580

QTRAP 4500: SCIEX QTRAP 4500.

Definition at line 8035 of file cv.hpp.

MS_QTRAP_6500 = 1002581

QTRAP 6500: SCIEX QTRAP 6500.

Definition at line 8038 of file cv.hpp.

MS_QTRAP_6500_ = 1002582

QTRAP 6500+: SCIEX QTRAP 6500+.

Definition at line 8041 of file cv.hpp.

MS_TripleTOF_4600 = 1002583

TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.

Definition at line 8044 of file cv.hpp.

MS_TripleTOF_5600_ = 1002584

TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.

Definition at line 8047 of file cv.hpp.

MS_API_100 = 1002585

API 100: Applied Biosystems/MDS SCIEX API 100 MS.

Definition at line 8050 of file cv.hpp.

MS_API_100LC = 1002586

API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.

Definition at line 8053 of file cv.hpp.

MS_API_165 = 1002587

API 165: Applied Biosystems/MDS SCIEX API 165 MS.

Definition at line 8056 of file cv.hpp.

MS_API_300 = 1002588

API 300: Applied Biosystems/MDS SCIEX API 300 MS.

Definition at line 8059 of file cv.hpp.

MS_API_350 = 1002589

API 350: Applied Biosystems/MDS SCIEX API 350 MS.

Definition at line 8062 of file cv.hpp.

MS_API_365 = 1002590

API 365: Applied Biosystems/MDS SCIEX API 365 MS.

Definition at line 8065 of file cv.hpp.

MS_Triple_Quad_3500 = 1002591

Triple Quad 3500: SCIEX Triple Quad 3500.

Definition at line 8068 of file cv.hpp.

MS_Triple_Quad_4500 = 1002592

Triple Quad 4500: SCIEX Triple Quad 4500.

Definition at line 8071 of file cv.hpp.

MS_Triple_Quad_5500 = 1002593

Triple Quad 5500: SCIEX Triple Quad 5500.

Definition at line 8074 of file cv.hpp.

MS_Triple_Quad_6500 = 1002594

Triple Quad 6500: SCIEX Triple Quad 6500.

Definition at line 8077 of file cv.hpp.

MS_Triple_Quad_6500_ = 1002595

Triple Quad 6500+: SCIEX Triple Quad 6500+.

Definition at line 8080 of file cv.hpp.

MS_ProLuCID = 1002596

ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute.

Definition at line 8083 of file cv.hpp.

MS_MS1_format = 1002597

MS1 format: MS1 file format for MS1 spectral data.

Definition at line 8086 of file cv.hpp.

MS_DTASelect = 1002598

DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches.

Definition at line 8089 of file cv.hpp.

MS_splash_key = 1002599

splash key: The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier for chemical compounds.

Definition at line 8092 of file cv.hpp.

MS_PRIDE_XML = 1002600

PRIDE XML: Internal data and submission format of the PRIDE database.

Definition at line 8095 of file cv.hpp.

MS_mzTab = 1002601

mzTab: Tabular result format for proteomics and metabolomics experiments.

Definition at line 8098 of file cv.hpp.

MS_quantification_reagent = 1002602

quantification reagent: Reagent used in labeled quantification methods.

Definition at line 8101 of file cv.hpp.

MS_ICAT_reagent = 1002603

ICAT reagent: Isotope coded affinity tag reagent.

Definition at line 8104 of file cv.hpp.

MS_ICAT_heavy_reagent = 1002604

ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.

Definition at line 8107 of file cv.hpp.

MS_ICAT_light_reagent = 1002605

ICAT light reagent: The name of the sample labelled with the light ICAT label.

Definition at line 8110 of file cv.hpp.

MS_ICPL_reagent = 1002606

ICPL reagent: Isotope coded protein labeling reagent.

Definition at line 8113 of file cv.hpp.

MS_ICPL_reagent_0 = 1002607

ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.

Definition at line 8116 of file cv.hpp.

MS_ICPL_reagent_4 = 1002608

ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.

Definition at line 8119 of file cv.hpp.

MS_ICPL_reagent_6 = 1002609

ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.

Definition at line 8122 of file cv.hpp.

MS_ICPL_reagent_10 = 1002610

ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.

Definition at line 8125 of file cv.hpp.

MS_SILAC_reagent = 1002611

SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.

Definition at line 8128 of file cv.hpp.

MS_SILAC_heavy_reagent = 1002612

SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.

Definition at line 8131 of file cv.hpp.

MS_SILAC_medium_reagent = 1002613

SILAC medium reagent: The name of the sample labelled with the medium SILAC label.

Definition at line 8134 of file cv.hpp.

MS_SILAC_light_reagent = 1002614

SILAC light reagent: The name of the sample labelled with the light SILAC label.

Definition at line 8137 of file cv.hpp.

MS_TMT_reagent = 1002615

TMT reagent: Tandem mass tag reagent.

Definition at line 8140 of file cv.hpp.

MS_TMT_reagent_126 = 1002616

TMT reagent 126: The name of the sample labelled with the TMT reagent 126.

Definition at line 8143 of file cv.hpp.

MS_TMT_reagent_127 = 1002617

TMT reagent 127: The name of the sample labelled with the TMT reagent 127.

Definition at line 8146 of file cv.hpp.

MS_TMT_reagent_128 = 1002618

TMT reagent 128: The name of the sample labelled with the TMT reagent 128.

Definition at line 8149 of file cv.hpp.

MS_TMT_reagent_129 = 1002619

TMT reagent 129: The name of the sample labelled with the TMT reagent 129.

Definition at line 8152 of file cv.hpp.

MS_TMT_reagent_130 = 1002620

TMT reagent 130: The name of the sample labelled with the TMT reagent 130.

Definition at line 8155 of file cv.hpp.

MS_TMT_reagent_131 = 1002621

TMT reagent 131: The name of the sample labelled with the TMT reagent 131.

Definition at line 8158 of file cv.hpp.

MS_iTRAQ_reagent = 1002622

iTRAQ reagent: Isobaric tag for relative and absolute quantitation reagent.

Definition at line 8161 of file cv.hpp.

MS_iTRAQ_reagent_113 = 1002623

iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.

Definition at line 8164 of file cv.hpp.

MS_iTRAQ_reagent_114 = 1002624

iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.

Definition at line 8167 of file cv.hpp.

MS_iTRAQ_reagent_115 = 1002625

iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.

Definition at line 8170 of file cv.hpp.

MS_iTRAQ_reagent_116 = 1002626

iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.

Definition at line 8173 of file cv.hpp.

MS_iTRAQ_reagent_117 = 1002627

iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.

Definition at line 8176 of file cv.hpp.

MS_iTRAQ_reagent_118 = 1002628

iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.

Definition at line 8179 of file cv.hpp.

MS_iTRAQ_reagent_119 = 1002629

iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.

Definition at line 8182 of file cv.hpp.

MS_iTRAQ_reagent_121 = 1002630

iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.

Definition at line 8185 of file cv.hpp.

MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_ = 1002631

Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).

Definition at line 8188 of file cv.hpp.

EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).

Definition at line 8191 of file cv.hpp.

MS_jPOST_dataset_identifier = 1002632

jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.

Definition at line 8194 of file cv.hpp.

MS_jPOST_dataset_URI = 1002633

jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.

Definition at line 8197 of file cv.hpp.

MS_Q_Exactive_Plus = 1002634

Q Exactive Plus: Thermo Scientific Q Exactive Plus.

Definition at line 8200 of file cv.hpp.

MS_proteogenomics_search = 1002635

proteogenomics search: Proteogenomics search performed.

Definition at line 8203 of file cv.hpp.

MS_proteogenomics_attribute = 1002636

proteogenomics attribute: Proteogenomics attribute.

Definition at line 8206 of file cv.hpp.

MS_chromosome_name = 1002637

chromosome name: The name or number of the chromosome to which a given peptide has been mapped.

Definition at line 8209 of file cv.hpp.

MS_chromosome_strand = 1002638

chromosome strand: The strand (+ or -) to which the peptide has been mapped.

Definition at line 8212 of file cv.hpp.

MS_peptide_start_on_chromosome_OBSOLETE = 1002639

peptide start on chromosome: The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system.

Definition at line 8215 of file cv.hpp.

MS_peptide_end_on_chromosome = 1002640

peptide end on chromosome: The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system.

Definition at line 8218 of file cv.hpp.

MS_peptide_exon_count = 1002641

peptide exon count: The number of exons to which the peptide has been mapped.

Definition at line 8221 of file cv.hpp.

MS_peptide_exon_nucleotide_sizes = 1002642

peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length.

Definition at line 8224 of file cv.hpp.

MS_peptide_start_positions_on_chromosome = 1002643

peptide start positions on chromosome: A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome.

Definition at line 8227 of file cv.hpp.

MS_genome_reference_version = 1002644

genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference.

Definition at line 8230 of file cv.hpp.

MS_MSDK = 1002645

MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data.

Definition at line 8233 of file cv.hpp.

MS_native_spectrum_identifier_format__combined_spectra = 1002646

native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.

Definition at line 8236 of file cv.hpp.

MS_nativeID_format__combined_spectra = MS_native_spectrum_identifier_format__combined_spectra

nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.

Definition at line 8239 of file cv.hpp.

MS_Thermo_nativeID_format__combined_spectra = 1002647

Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8242 of file cv.hpp.

MS_Waters_nativeID_format__combined_spectra = 1002648

Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8245 of file cv.hpp.

MS_WIFF_nativeID_format__combined_spectra = 1002649

WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8248 of file cv.hpp.

MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra = 1002650

Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8251 of file cv.hpp.

MS_Bruker_BAF_nativeID_format__combined_spectra = 1002651

Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8254 of file cv.hpp.

MS_Bruker_FID_nativeID_format__combined_spectra = 1002652

Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8257 of file cv.hpp.

MS_multiple_peak_list_nativeID_format__combined_spectra = 1002653

multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8260 of file cv.hpp.

MS_single_peak_list_nativeID_format__combined_spectra = 1002654

single peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8263 of file cv.hpp.

MS_scan_number_only_nativeID_format__combined_spectra = 1002655

scan number only nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8266 of file cv.hpp.

MS_spectrum_identifier_nativeID_format__combined_spectra = 1002656

spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8269 of file cv.hpp.

MS_mzML_unique_identifier__combined_spectra = 1002657

mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.

Definition at line 8272 of file cv.hpp.

MS_identification_parameter = 1002658

identification parameter: Identification parameter for the search engine run.

Definition at line 8275 of file cv.hpp.

MS_UniProtKB_text_sequence_format = 1002659

UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.

Definition at line 8278 of file cv.hpp.

MS_UniProtKB_XML_sequence_format = 1002660

UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.

Definition at line 8281 of file cv.hpp.

MS_Morpheus = 1002661

Morpheus: Morpheus search engine.

Definition at line 8284 of file cv.hpp.

MS_Morpheus_Morpheus_score = 1002662

Morpheus:Morpheus score: Morpheus score for PSMs.

Definition at line 8287 of file cv.hpp.

MS_Morpheus_summed_Morpheus_score = 1002663

Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.

Definition at line 8290 of file cv.hpp.

MS_interaction_score_derived_from_cross_linking = 1002664

interaction score derived from cross-linking: Parent term for interaction scores derived from cross-linking.

Definition at line 8293 of file cv.hpp.

MS_regular_expression_for_interaction_scores_derived_from_cross_linking = 1002665

))

Definition at line 8296 of file cv.hpp.

MS_impact_II = 1002666

impact II: Bruker Daltonics' impact II.

Definition at line 8299 of file cv.hpp.

MS_impact_HD = 1002667

impact HD: Bruker Daltonics' impact HD.

Definition at line 8302 of file cv.hpp.

MS_frag__iTRAQ_4plex_reporter_ion = 1002668

frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114.

Definition at line 8305 of file cv.hpp.

MS_frag__iTRAQ_8plex_reporter_ion = 1002669

frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113.

Definition at line 8308 of file cv.hpp.

MS_frag__TMT_reporter_ion = 1002670

frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N.

Definition at line 8311 of file cv.hpp.

MS_frag__TMT_ETD_reporter_ion = 1002671

frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C.

Definition at line 8314 of file cv.hpp.

MS_no_modification_threshold = 1002672

no modification threshold: No statistical threshold for accepting or rejecting that a modification position.

Definition at line 8317 of file cv.hpp.

MS_OpenXQuest = 1002673

OpenXQuest: Cross-Linking MS search engine.

Definition at line 8320 of file cv.hpp.

MS_X500R_QTOF = 1002674

X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.

Definition at line 8323 of file cv.hpp.

MS_cross_linking_result_details = 1002675

cross-linking result details: This subsection describes terms which can describe details of cross-linking results.

Definition at line 8326 of file cv.hpp.

MS_protein_pair_level_global_FDR = 1002676

protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.

Definition at line 8329 of file cv.hpp.

MS_residue_pair_level_global_FDR = 1002677

residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.

Definition at line 8332 of file cv.hpp.

MS_supplemental_higher_energy_beam_type_collision_induced_dissociation = 1002678

supplemental higher energy beam-type collision-induced dissociation: A supplemental collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.

Definition at line 8335 of file cv.hpp.

MS_supplemental_collision_induced_dissociation = 1002679

supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisional excitation.

Definition at line 8338 of file cv.hpp.

MS_supplemental_collision_energy = 1002680

supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion.

Definition at line 8341 of file cv.hpp.

MS_OpenXQuest_combined_score = 1002681

OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.

Definition at line 8344 of file cv.hpp.

MS_OpenXQuest_xcorr_xlink = 1002682

OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.

Definition at line 8347 of file cv.hpp.

MS_OpenXQuest_xcorr_common = 1002683

OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.

Definition at line 8350 of file cv.hpp.

MS_OpenXQuest_match_odds = 1002684

OpenXQuest:match-odds: OpenXQuest's match-odds subscore.

Definition at line 8353 of file cv.hpp.

MS_OpenXQuest_intsum = 1002685

OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.

Definition at line 8356 of file cv.hpp.

MS_OpenXQuest_wTIC = 1002686

OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.

Definition at line 8359 of file cv.hpp.

MS_analysis_attribute = 1002687

analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.

Definition at line 8362 of file cv.hpp.

MS_PTM_localization_attribute = 1002688

PTM localization attribute: Statistic derived from a post-translational modification localization analysis.

Definition at line 8365 of file cv.hpp.

MS_PTM_localization_single_result_statistic = 1002689

PTM localization single result statistic: Statistic for a single item derived from a post-translational modification localization analysis.

Definition at line 8368 of file cv.hpp.

MS_PTM_localization_result_list_statistic = 1002690

PTM localization result list statistic: Statistic for all items derived from a post-translational modification localization analysis.

Definition at line 8371 of file cv.hpp.

MS_global_FLR = 1002691

global FLR: Global false localization rate for all localizations in a dataset.

Definition at line 8374 of file cv.hpp.

MS_local_FLR_at_threshold = 1002692

local FLR at threshold: Local false localization rate for the bottom item in list of localizations sorted from most to least confident.

Definition at line 8377 of file cv.hpp.

MS_identification_attribute = 1002693

identification attribute: Attribute of an identification item in the result of mass spectrometry proteomics data analysis.

Definition at line 8380 of file cv.hpp.

MS_single_identification_result_attribute = 1002694

single identification result attribute: Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis.

Definition at line 8383 of file cv.hpp.

MS_frag__isobaric_label_ion = 1002695

frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.

Definition at line 8386 of file cv.hpp.

MS_secondary_isotope_peak = 1002697

secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion.

Definition at line 8389 of file cv.hpp.

MS_protein_cluster_identification_attribute = 1002698

protein cluster identification attribute: An attribute of the protein cluster concept as used in mzIdentML.

Definition at line 8392 of file cv.hpp.

MS_result_list_attribute = 1002699

result list attribute: General property of an entire result list.

Definition at line 8395 of file cv.hpp.

MS_PSM_level_result_list_attribute = 1002700

PSM-level result list attribute: General property of the list of all PSMs.

Definition at line 8398 of file cv.hpp.

MS_PSM_level_result_list_statistic = 1002701

PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.

Definition at line 8401 of file cv.hpp.

MS_peptide_sequence_level_result_list_attribute = 1002702

peptide sequence-level result list attribute: General property of all peptide sequences in the list.

Definition at line 8404 of file cv.hpp.

MS_peptide_sequence_level_result_list_statistic = 1002703

peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the list.

Definition at line 8407 of file cv.hpp.

MS_protein_level_result_list_attribute = 1002704

protein-level result list attribute: Attribute of an entire protein list.

Definition at line 8410 of file cv.hpp.

MS_protein_level_result_list_statistic = 1002705

protein-level result list statistic: A statistical metric of an entire protein list.

Definition at line 8413 of file cv.hpp.

MS_protein_group_level_result_list_statistic = 1002706

protein group-level result list statistic: Attrbiute of an entire list of protein groups.

Definition at line 8416 of file cv.hpp.

UNIMOD_unimod_root_node = 100000000

unimod root node: The root node of the unimod modifications ontology.

Definition at line 8419 of file cv.hpp.

UNIMOD_Acetyl = 100000001

Acetyl: Acetylation.

Definition at line 8422 of file cv.hpp.

Referenced by test().

UNIMOD_Amidated = 100000002

Amidated: Amidation.

Definition at line 8425 of file cv.hpp.

Referenced by testConversion().

UNIMOD_Biotin = 100000003

Biotin: Biotinylation.

Definition at line 8428 of file cv.hpp.

UNIMOD_Carbamidomethyl = 100000004

Carbamidomethyl: Iodoacetamide derivative.

Definition at line 8431 of file cv.hpp.

Referenced by testConversion().

UNIMOD_Carbamyl = 100000005

Carbamyl: Carbamylation.

Definition at line 8434 of file cv.hpp.

UNIMOD_Carboxymethyl = 100000006

Carboxymethyl: Iodoacetic acid derivative.

Definition at line 8437 of file cv.hpp.

UNIMOD_Deamidated = 100000007

Deamidated: Deamidation.

Definition at line 8440 of file cv.hpp.

UNIMOD_ICAT_G = 100000008

ICAT-G: Gygi ICAT(TM) d0.

Definition at line 8443 of file cv.hpp.

UNIMOD_ICAT_G_2H_8_ = 100000009

ICAT-G:2H(8): Gygi ICAT(TM) d8.

Definition at line 8446 of file cv.hpp.

UNIMOD_Met__Hse = 100000010

Met->Hse: Homoserine.

Definition at line 8449 of file cv.hpp.

Referenced by test().

UNIMOD_Met__Hsl = 100000011

Met->Hsl: Homoserine lactone.

Definition at line 8452 of file cv.hpp.

UNIMOD_ICAT_D_2H_8_ = 100000012

ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.

Definition at line 8455 of file cv.hpp.

UNIMOD_ICAT_D = 100000013

ICAT-D: Applied Biosystems original ICAT(TM) d0.

Definition at line 8458 of file cv.hpp.

UNIMOD_NIPCAM = 100000017

NIPCAM: N-isopropylcarboxamidomethyl.

Definition at line 8461 of file cv.hpp.

UNIMOD_PEO_Iodoacetyl_LC_Biotin = 100000020

PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.

Definition at line 8464 of file cv.hpp.

UNIMOD_Phospho = 100000021

Phospho: Phosphorylation.

Definition at line 8467 of file cv.hpp.

Referenced by test(), testConversion(), and testPropertyValues().

UNIMOD_Dehydrated = 100000023

Dehydrated: Dehydration.

Definition at line 8470 of file cv.hpp.

UNIMOD_Propionamide = 100000024

Propionamide: Acrylamide adduct.

Definition at line 8473 of file cv.hpp.

UNIMOD_Pyridylacetyl = 100000025

Pyridylacetyl: Pyridylacetyl.

Definition at line 8476 of file cv.hpp.

UNIMOD_Pyro_carbamidomethyl = 100000026

Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).

Definition at line 8479 of file cv.hpp.

UNIMOD_Glu__pyro_Glu = 100000027

Glu->pyro-Glu: Pyro-glu from E.

Definition at line 8482 of file cv.hpp.

UNIMOD_Gln__pyro_Glu = 100000028

Gln->pyro-Glu: Pyro-glu from Q.

Definition at line 8485 of file cv.hpp.

Referenced by test(), testModification(), and testSearchModification().

UNIMOD_SMA = 100000029

SMA: N-Succinimidyl-2-morpholine acetate.

Definition at line 8488 of file cv.hpp.

UNIMOD_Cation_Na = 100000030

Cation:Na: Sodium adduct.

Definition at line 8491 of file cv.hpp.

UNIMOD_Pyridylethyl = 100000031

Pyridylethyl: S-pyridylethylation.

Definition at line 8494 of file cv.hpp.

UNIMOD_Methyl = 100000034

Methyl: Methylation.

Definition at line 8497 of file cv.hpp.

UNIMOD_Oxidation = 100000035

Oxidation: Oxidation or Hydroxylation.

Definition at line 8500 of file cv.hpp.

Referenced by test(), and testSearchModification().

UNIMOD_Dimethyl = 100000036

Dimethyl: Di-Methylation.

Definition at line 8503 of file cv.hpp.

UNIMOD_Trimethyl = 100000037

Trimethyl: Tri-Methylation.

Definition at line 8506 of file cv.hpp.

UNIMOD_Methylthio = 100000039

Methylthio: Beta-methylthiolation.

Definition at line 8509 of file cv.hpp.

UNIMOD_Sulfo = 100000040

Sulfo: O-Sulfonation.

Definition at line 8512 of file cv.hpp.

UNIMOD_Hex = 100000041

Hex: Hexose.

Definition at line 8515 of file cv.hpp.

UNIMOD_Lipoyl = 100000042

Lipoyl: Lipoyl.

Definition at line 8518 of file cv.hpp.

UNIMOD_HexNAc = 100000043

HexNAc: N-Acetylhexosamine.

Definition at line 8521 of file cv.hpp.

UNIMOD_Farnesyl = 100000044

Farnesyl: Farnesylation.

Definition at line 8524 of file cv.hpp.

UNIMOD_Myristoyl = 100000045

Myristoyl: Myristoylation.

Definition at line 8527 of file cv.hpp.

UNIMOD_PyridoxalPhosphate = 100000046

PyridoxalPhosphate: Pyridoxal phosphate.

Definition at line 8530 of file cv.hpp.

UNIMOD_Palmitoyl = 100000047

Palmitoyl: Palmitoylation.

Definition at line 8533 of file cv.hpp.

UNIMOD_GeranylGeranyl = 100000048

GeranylGeranyl: Geranyl-geranyl.

Definition at line 8536 of file cv.hpp.

UNIMOD_Phosphopantetheine = 100000049

Phosphopantetheine: Phosphopantetheine.

Definition at line 8539 of file cv.hpp.

UNIMOD_FAD = 100000050

FAD: Flavin adenine dinucleotide.

Definition at line 8542 of file cv.hpp.

UNIMOD_Tripalmitate = 100000051

Tripalmitate: N-acyl diglyceride cysteine.

Definition at line 8545 of file cv.hpp.

UNIMOD_Guanidinyl = 100000052

Guanidinyl: Guanidination.

Definition at line 8548 of file cv.hpp.

UNIMOD_HNE = 100000053

HNE: 4-hydroxynonenal (HNE).

Definition at line 8551 of file cv.hpp.

UNIMOD_Glucuronyl = 100000054

Glucuronyl: Hexuronic acid.

Definition at line 8554 of file cv.hpp.

UNIMOD_Glutathione = 100000055

Glutathione: Glutathione disulfide.

Definition at line 8557 of file cv.hpp.

UNIMOD_Acetyl_2H_3_ = 100000056

Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).

Definition at line 8560 of file cv.hpp.

UNIMOD_Propionyl = 100000058

Propionyl: Propionate labeling reagent light form (N-term & K).

Definition at line 8563 of file cv.hpp.

UNIMOD_Propionyl_13C_3_ = 100000059

Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.

Definition at line 8566 of file cv.hpp.

UNIMOD_GIST_Quat = 100000060

GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).

Definition at line 8569 of file cv.hpp.

UNIMOD_GIST_Quat_2H_3_ = 100000061

GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.

Definition at line 8572 of file cv.hpp.

UNIMOD_GIST_Quat_2H_6_ = 100000062

GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.

Definition at line 8575 of file cv.hpp.

UNIMOD_GIST_Quat_2H_9_ = 100000063

GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.

Definition at line 8578 of file cv.hpp.

UNIMOD_Succinyl = 100000064

Succinyl: Succinic anhydride labeling reagent light form (N-term & K).

Definition at line 8581 of file cv.hpp.

UNIMOD_Succinyl_2H_4_ = 100000065

Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.

Definition at line 8584 of file cv.hpp.

UNIMOD_Succinyl_13C_4_ = 100000066

Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.

Definition at line 8587 of file cv.hpp.

UNIMOD_Iminobiotin = 100000089

Iminobiotin: Iminobiotinylation.

Definition at line 8590 of file cv.hpp.

UNIMOD_ESP = 100000090

ESP: ESP-Tag light d0.

Definition at line 8593 of file cv.hpp.

UNIMOD_ESP_2H_10_ = 100000091

ESP:2H(10): ESP-Tag heavy d10.

Definition at line 8596 of file cv.hpp.

UNIMOD_NHS_LC_Biotin = 100000092

NHS-LC-Biotin: NHS-LC-Biotin.

Definition at line 8599 of file cv.hpp.

UNIMOD_EDT_maleimide_PEO_biotin = 100000093

EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.

Definition at line 8602 of file cv.hpp.

UNIMOD_IMID = 100000094

IMID: IMID d0.

Definition at line 8605 of file cv.hpp.

UNIMOD_IMID_2H_4_ = 100000095

IMID:2H(4): IMID d4.

Definition at line 8608 of file cv.hpp.

UNIMOD_Propionamide_2H_3_ = 100000097

Propionamide:2H(3): Acrylamide d3.

Definition at line 8611 of file cv.hpp.

UNIMOD_ICAT_C = 100000105

ICAT-C: Applied Biosystems cleavable ICAT(TM) light.

Definition at line 8614 of file cv.hpp.

UNIMOD_ICAT_C_13C_9_ = 100000106

ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.

Definition at line 8617 of file cv.hpp.

UNIMOD_FormylMet = 100000107

FormylMet: Addition of N-formyl met.

Definition at line 8620 of file cv.hpp.

UNIMOD_Nethylmaleimide = 100000108

Nethylmaleimide: N-ethylmaleimide on cysteines.

Definition at line 8623 of file cv.hpp.

UNIMOD_OxLysBiotinRed = 100000112

OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.

Definition at line 8626 of file cv.hpp.

UNIMOD_OxLysBiotin = 100000113

OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.

Definition at line 8629 of file cv.hpp.

UNIMOD_OxProBiotinRed = 100000114

OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.

Definition at line 8632 of file cv.hpp.

UNIMOD_OxProBiotin = 100000115

OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.

Definition at line 8635 of file cv.hpp.

UNIMOD_OxArgBiotin = 100000116

OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.

Definition at line 8638 of file cv.hpp.

UNIMOD_OxArgBiotinRed = 100000117

OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.

Definition at line 8641 of file cv.hpp.

UNIMOD_EDT_iodoacetyl_PEO_biotin = 100000118

EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.

Definition at line 8644 of file cv.hpp.

UNIMOD_IBTP = 100000119

IBTP: Thio Ether Formation - BTP Adduct.

Definition at line 8647 of file cv.hpp.

UNIMOD_GG = 100000121

GG: Ubiquitinylation residue.

Definition at line 8650 of file cv.hpp.

UNIMOD_Formyl = 100000122

Formyl: Formylation.

Definition at line 8653 of file cv.hpp.

UNIMOD_ICAT_H = 100000123

ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.

Definition at line 8656 of file cv.hpp.

UNIMOD_ICAT_H_13C_6_ = 100000124

ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.

Definition at line 8659 of file cv.hpp.

UNIMOD_Thioacyl = 100000126

Thioacyl: 3-sulfanylpropanoyl.

Definition at line 8662 of file cv.hpp.

UNIMOD_Fluoro = 100000127

Fluoro: Fluorination.

Definition at line 8665 of file cv.hpp.

UNIMOD_Fluorescein = 100000128

Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).

Definition at line 8668 of file cv.hpp.

UNIMOD_Iodo = 100000129

Iodo: Iodination.

Definition at line 8671 of file cv.hpp.

UNIMOD_Diiodo = 100000130

Diiodo: Di-Iodination.

Definition at line 8674 of file cv.hpp.

UNIMOD_Triiodo = 100000131

Triiodo: Tri-Iodination.

Definition at line 8677 of file cv.hpp.

UNIMOD_Myristoleyl = 100000134

Myristoleyl: (cis-delta 5)-tetradecaenoyl.

Definition at line 8680 of file cv.hpp.

UNIMOD_Myristoyl_Delta_H__4_ = 100000135

Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.

Definition at line 8683 of file cv.hpp.

UNIMOD_Benzoyl = 100000136

Benzoyl: Labeling reagent light form (N-term & K).

Definition at line 8686 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_2_ = 100000137

Hex(5)HexNAc(2): N-linked glycan core.

Definition at line 8689 of file cv.hpp.

UNIMOD_Dansyl = 100000139

Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.

Definition at line 8692 of file cv.hpp.

UNIMOD_a_type_ion = 100000140

a-type-ion: ISD a-series (C-Term).

Definition at line 8695 of file cv.hpp.

UNIMOD_Amidine = 100000141

Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.

Definition at line 8698 of file cv.hpp.

UNIMOD_HexNAc_1_dHex_1_ = 100000142

HexNAc(1)dHex(1): HexNAc1dHex1.

Definition at line 8701 of file cv.hpp.

UNIMOD_HexNAc_2_ = 100000143

HexNAc(2): HexNAc2.

Definition at line 8704 of file cv.hpp.

UNIMOD_Hex_3_ = 100000144

Hex(3): Hex3.

Definition at line 8707 of file cv.hpp.

UNIMOD_HexNAc_1_dHex_2_ = 100000145

HexNAc(1)dHex(2): HexNAc1dHex2.

Definition at line 8710 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_dHex_1_ = 100000146

Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.

Definition at line 8713 of file cv.hpp.

UNIMOD_HexNAc_2_dHex_1_ = 100000147

HexNAc(2)dHex(1): HexNAc2dHex1.

Definition at line 8716 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_ = 100000148

Hex(1)HexNAc(2): Hex1HexNAc2.

Definition at line 8719 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_1_ = 100000149

Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.

Definition at line 8722 of file cv.hpp.

UNIMOD_HexNAc_2_dHex_2_ = 100000150

HexNAc(2)dHex(2): HexNAc2dHex2.

Definition at line 8725 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_Pent_1_ = 100000151

Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.

Definition at line 8728 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_dHex_1_ = 100000152

Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.

Definition at line 8731 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_ = 100000153

Hex(2)HexNAc(2): Hex2HexNAc2.

Definition at line 8734 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_1_Pent_1_ = 100000154

Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.

Definition at line 8737 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_ = 100000155

Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.

Definition at line 8740 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_dHex_2_ = 100000156

Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.

Definition at line 8743 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_Pent_1_ = 100000157

Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.

Definition at line 8746 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_dHex_1_ = 100000158

Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.

Definition at line 8749 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_2_ = 100000159

Hex(3)HexNAc(2): Hex3HexNAc2.

Definition at line 8752 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_2_ = 100000160

Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.

Definition at line 8755 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_2_Phos_1_ = 100000161

Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.

Definition at line 8758 of file cv.hpp.

UNIMOD_Delta_S__1_Se_1_ = 100000162

Delta:S(-1)Se(1): Selenium replaces sulfur.

Definition at line 8761 of file cv.hpp.

UNIMOD_Delta_H_1_N__1_18O_1_ = 100000170

Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.

Definition at line 8764 of file cv.hpp.

UNIMOD_NBS_13C_6_ = 100000171

NBS:13C(6): Shimadzu NBS-13C.

Definition at line 8767 of file cv.hpp.

UNIMOD_NBS = 100000172

NBS: Shimadzu NBS-12C.

Definition at line 8770 of file cv.hpp.

UNIMOD_BHT = 100000176

BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.

Definition at line 8773 of file cv.hpp.

UNIMOD_DAET = 100000178

DAET: Phosphorylation to amine thiol.

Definition at line 8776 of file cv.hpp.

UNIMOD_Label_13C_9_ = 100000184

Label:13C(9): 13C(9) Silac label.

Definition at line 8779 of file cv.hpp.

UNIMOD_Label_13C_9__Phospho = 100000185

Label:13C(9)+Phospho: C13 label (Phosphotyrosine).

Definition at line 8782 of file cv.hpp.

UNIMOD_HPG = 100000186

HPG: Hydroxyphenylglyoxal arginine.

Definition at line 8785 of file cv.hpp.

UNIMOD_2HPG = 100000187

2HPG: Bis(hydroxphenylglyoxal) arginine.

Definition at line 8788 of file cv.hpp.

UNIMOD_Label_13C_6_ = 100000188

Label:13C(6): 13C(6) Silac label.

Definition at line 8791 of file cv.hpp.

UNIMOD_Label_18O_2_ = 100000193

Label:18O(2): O18 label at both C-terminal oxygens.

Definition at line 8794 of file cv.hpp.

UNIMOD_AccQTag = 100000194

AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.

Definition at line 8797 of file cv.hpp.

UNIMOD_QAT = 100000195

QAT: APTA-d0.

Definition at line 8800 of file cv.hpp.

UNIMOD_QAT_2H_3_ = 100000196

QAT:2H(3): APTA d3.

Definition at line 8803 of file cv.hpp.

UNIMOD_EQAT = 100000197

EQAT: EAPTA d0.

Definition at line 8806 of file cv.hpp.

UNIMOD_EQAT_2H_5_ = 100000198

EQAT:2H(5): EAPTA d5.

Definition at line 8809 of file cv.hpp.

UNIMOD_Dimethyl_2H_4_ = 100000199

Dimethyl:2H(4): DiMethyl-CHD2.

Definition at line 8812 of file cv.hpp.

UNIMOD_Ethanedithiol = 100000200

Ethanedithiol: EDT.

Definition at line 8815 of file cv.hpp.

UNIMOD_Delta_H_6_C_6_O_1_ = 100000205

Delta:H(6)C(6)O(1): Acrolein addition +94.

Definition at line 8818 of file cv.hpp.

UNIMOD_Delta_H_4_C_3_O_1_ = 100000206

Delta:H(4)C(3)O(1): Acrolein addition +56.

Definition at line 8821 of file cv.hpp.

UNIMOD_Delta_H_2_C_3_ = 100000207

Delta:H(2)C(3): Acrolein addition +38.

Definition at line 8824 of file cv.hpp.

UNIMOD_Delta_H_4_C_6_ = 100000208

Delta:H(4)C(6): Acrolein addition +76.

Definition at line 8827 of file cv.hpp.

UNIMOD_Delta_H_8_C_6_O_2_ = 100000209

Delta:H(8)C(6)O(2): Acrolein addition +112.

Definition at line 8830 of file cv.hpp.

UNIMOD_NEIAA = 100000211

NEIAA: N-ethyl iodoacetamide-d0.

Definition at line 8833 of file cv.hpp.

UNIMOD_NEIAA_2H_5_ = 100000212

NEIAA:2H(5): N-ethyl iodoacetamide-d5.

Definition at line 8836 of file cv.hpp.

UNIMOD_ADP_Ribosyl = 100000213

ADP-Ribosyl: ADP Ribose addition.

Definition at line 8839 of file cv.hpp.

UNIMOD_iTRAQ4plex = 100000214

iTRAQ4plex: Representative mass and accurate mass for 116 & 117.

Definition at line 8842 of file cv.hpp.

UNIMOD_IGBP = 100000243

IGBP: Light IDBEST tag for quantitation.

Definition at line 8845 of file cv.hpp.

UNIMOD_Crotonaldehyde = 100000253

Crotonaldehyde: Crotonaldehyde.

Definition at line 8848 of file cv.hpp.

UNIMOD_Delta_H_2_C_2_ = 100000254

Delta:H(2)C(2): Acetaldehyde +26.

Definition at line 8851 of file cv.hpp.

UNIMOD_Delta_H_4_C_2_ = 100000255

Delta:H(4)C(2): Acetaldehyde +28.

Definition at line 8854 of file cv.hpp.

UNIMOD_Delta_H_4_C_3_ = 100000256

Delta:H(4)C(3): Propionaldehyde +40.

Definition at line 8857 of file cv.hpp.

UNIMOD_Label_18O_1_ = 100000258

Label:18O(1): O18 Labeling.

Definition at line 8860 of file cv.hpp.

UNIMOD_Label_13C_6_15N_2_ = 100000259

Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.

Definition at line 8863 of file cv.hpp.

UNIMOD_Thiophospho = 100000260

Thiophospho: Thiophosphorylation.

Definition at line 8866 of file cv.hpp.

UNIMOD_SPITC = 100000261

SPITC: 4-sulfophenyl isothiocyanate.

Definition at line 8869 of file cv.hpp.

UNIMOD_Label_2H_3_ = 100000262

Label:2H(3): Trideuteration.

Definition at line 8872 of file cv.hpp.

UNIMOD_PET = 100000264

PET: Phosphorylation to pyridyl thiol.

Definition at line 8875 of file cv.hpp.

UNIMOD_Label_13C_6_15N_4_ = 100000267

Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.

Definition at line 8878 of file cv.hpp.

UNIMOD_Label_13C_5_15N_1_ = 100000268

Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.

Definition at line 8881 of file cv.hpp.

UNIMOD_Label_13C_9_15N_1_ = 100000269

Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.

Definition at line 8884 of file cv.hpp.

UNIMOD_Cytopiloyne = 100000270

Cytopiloyne: Nucleophilic addtion to cytopiloyne.

Definition at line 8887 of file cv.hpp.

UNIMOD_Cytopiloyne_water = 100000271

Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.

Definition at line 8890 of file cv.hpp.

UNIMOD_CAF = 100000272

CAF: Sulfonation of N-terminus.

Definition at line 8893 of file cv.hpp.

UNIMOD_Xlink_SSD = 100000273

Xlink:SSD: Covalent modification of lysine by cross-linking reagent.

Definition at line 8896 of file cv.hpp.

UNIMOD_Nitrosyl = 100000275

Nitrosyl: S-nitrosylation.

Definition at line 8899 of file cv.hpp.

UNIMOD_AEBS = 100000276

AEBS: Aminoethylbenzenesulfonylation.

Definition at line 8902 of file cv.hpp.

UNIMOD_Ethanolyl = 100000278

Ethanolyl: Ethanolation.

Definition at line 8905 of file cv.hpp.

UNIMOD_Ethyl = 100000280

Ethyl: Ethylation.

Definition at line 8908 of file cv.hpp.

UNIMOD_CoenzymeA = 100000281

CoenzymeA: Cysteine modified Coenzyme A.

Definition at line 8911 of file cv.hpp.

UNIMOD_Methyl_2H_2_ = 100000284

Methyl:2H(2): Deuterium Methylation of Lysine.

Definition at line 8914 of file cv.hpp.

UNIMOD_SulfanilicAcid = 100000285

SulfanilicAcid: Light Sulfanilic Acid (SA) C12.

Definition at line 8917 of file cv.hpp.

UNIMOD_SulfanilicAcid_13C_6_ = 100000286

SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.

Definition at line 8920 of file cv.hpp.

UNIMOD_Trp__Oxolactone = 100000288

Trp->Oxolactone: Tryptophan oxidation to oxolactone.

Definition at line 8923 of file cv.hpp.

UNIMOD_Biotin_PEO_Amine = 100000289

Biotin-PEO-Amine: Biotin polyethyleneoxide amine.

Definition at line 8926 of file cv.hpp.

UNIMOD_Biotin_HPDP = 100000290

Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.

Definition at line 8929 of file cv.hpp.

UNIMOD_Delta_Hg_1_ = 100000291

Delta:Hg(1): Mercury Mercaptan.

Definition at line 8932 of file cv.hpp.

UNIMOD_IodoU_AMP = 100000292

IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.

Definition at line 8935 of file cv.hpp.

UNIMOD_CAMthiopropanoyl = 100000293

CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.

Definition at line 8938 of file cv.hpp.

UNIMOD_IED_Biotin = 100000294

IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.

Definition at line 8941 of file cv.hpp.

UNIMOD_dHex = 100000295

dHex: Fucose.

Definition at line 8944 of file cv.hpp.

UNIMOD_Methyl_2H_3_ = 100000298

Methyl:2H(3): Deuterated methyl ester.

Definition at line 8947 of file cv.hpp.

UNIMOD_Carboxy = 100000299

Carboxy: Carboxylation.

Definition at line 8950 of file cv.hpp.

UNIMOD_Bromobimane = 100000301

Bromobimane: Monobromobimane derivative.

Definition at line 8953 of file cv.hpp.

UNIMOD_Menadione = 100000302

Menadione: Menadione quinone derivative.

Definition at line 8956 of file cv.hpp.

UNIMOD_DeStreak = 100000303

DeStreak: Cysteine mercaptoethanol.

Definition at line 8959 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_ = 100000305

dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).

Definition at line 8962 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_4_ = 100000307

dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).

Definition at line 8965 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_ = 100000308

dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.

Definition at line 8968 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_4_ = 100000309

Hex(3)HexNAc(4): Biantennary (-2 galactose).

Definition at line 8971 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_ = 100000310

Hex(4)HexNAc(4): Biantennary (-1 galactose).

Definition at line 8974 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_ = 100000311

Hex(5)HexNAc(4): Biantennary.

Definition at line 8977 of file cv.hpp.

UNIMOD_Cysteinyl = 100000312

Cysteinyl: Cysteinylation.

Definition at line 8980 of file cv.hpp.

UNIMOD_Lys_loss = 100000313

Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.

Definition at line 8983 of file cv.hpp.

UNIMOD_Nmethylmaleimide = 100000314

Nmethylmaleimide: Nmethylmaleimide.

Definition at line 8986 of file cv.hpp.

UNIMOD_DimethylpyrroleAdduct = 100000316

DimethylpyrroleAdduct: 2,5-dimethypyrrole.

Definition at line 8989 of file cv.hpp.

UNIMOD_Delta_H_2_C_5_ = 100000318

Delta:H(2)C(5): MDA adduct +62.

Definition at line 8992 of file cv.hpp.

UNIMOD_Delta_H_2_C_3_O_1_ = 100000319

Delta:H(2)C(3)O(1): MDA adduct +54.

Definition at line 8995 of file cv.hpp.

UNIMOD_Nethylmaleimide_water = 100000320

Nethylmaleimide+water: Nethylmaleimidehydrolysis.

Definition at line 8998 of file cv.hpp.

UNIMOD_Xlink_B10621 = 100000323

Xlink:B10621: Bis-N-I-sulfonerahodamine.

Definition at line 9001 of file cv.hpp.

UNIMOD_DTBP = 100000324

DTBP: Dimethyl 3,3\'-dithiobispropionimidate.

Definition at line 9004 of file cv.hpp.

UNIMOD_FP_Biotin = 100000325

FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.

Definition at line 9007 of file cv.hpp.

UNIMOD_Delta_H_4_C_2_O__1_S_1_ = 100000327

Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.

Definition at line 9010 of file cv.hpp.

UNIMOD_Methyl_2H_3_13C_1_ = 100000329

Methyl:2H(3)13C(1): Monomethylation.

Definition at line 9013 of file cv.hpp.

UNIMOD_Dimethyl_2H_6_13C_2_ = 100000330

Dimethyl:2H(6)13C(2): Dimethylation.

Definition at line 9016 of file cv.hpp.

UNIMOD_Thiophos_S_S_biotin = 100000332

Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.

Definition at line 9019 of file cv.hpp.

UNIMOD_Can_FP_biotin = 100000333

Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.

Definition at line 9022 of file cv.hpp.

UNIMOD_HNE_Delta_H_2_ = 100000335

HNE+Delta:H(2): Reduced 4-Hydroxynonenal.

Definition at line 9025 of file cv.hpp.

UNIMOD_Methylamine = 100000337

Methylamine: Michael addition with methylamine.

Definition at line 9028 of file cv.hpp.

UNIMOD_Bromo = 100000340

Bromo: Bromination.

Definition at line 9031 of file cv.hpp.

UNIMOD_Amino = 100000342

Amino: Tyrosine oxidation to 2-aminotyrosine.

Definition at line 9034 of file cv.hpp.

UNIMOD_Argbiotinhydrazide = 100000343

Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.

Definition at line 9037 of file cv.hpp.

UNIMOD_Arg__GluSA = 100000344

Arg->GluSA: Arginine oxidation to glutamic semialdehyde.

Definition at line 9040 of file cv.hpp.

UNIMOD_Trioxidation = 100000345

Trioxidation: Cysteine oxidation to cysteic acid.

Definition at line 9043 of file cv.hpp.

UNIMOD_His__Asn = 100000348

His->Asn: His->Asn substitution.

Definition at line 9046 of file cv.hpp.

UNIMOD_His__Asp = 100000349

His->Asp: His->Asp substitution.

Definition at line 9049 of file cv.hpp.

UNIMOD_Trp__Hydroxykynurenin = 100000350

Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.

Definition at line 9052 of file cv.hpp.

UNIMOD_Trp__Kynurenin = 100000351

Trp->Kynurenin: Tryptophan oxidation to kynurenin.

Definition at line 9055 of file cv.hpp.

UNIMOD_Lys__Allysine = 100000352

Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.

Definition at line 9058 of file cv.hpp.

UNIMOD_Lysbiotinhydrazide = 100000353

Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.

Definition at line 9061 of file cv.hpp.

UNIMOD_Nitro = 100000354

Nitro: Oxidation to nitro.

Definition at line 9064 of file cv.hpp.

UNIMOD_probiotinhydrazide = 100000357

probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.

Definition at line 9067 of file cv.hpp.

UNIMOD_Pro__pyro_Glu = 100000359

Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.

Definition at line 9070 of file cv.hpp.

UNIMOD_Pro__Pyrrolidinone = 100000360

Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.

Definition at line 9073 of file cv.hpp.

UNIMOD_Thrbiotinhydrazide = 100000361

Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.

Definition at line 9076 of file cv.hpp.

UNIMOD_Diisopropylphosphate = 100000362

Diisopropylphosphate: O-Diisopropylphosphorylation.

Definition at line 9079 of file cv.hpp.

UNIMOD_Isopropylphospho = 100000363

Isopropylphospho: O-Isopropylphosphorylation.

Definition at line 9082 of file cv.hpp.

UNIMOD_ICPL_13C_6_ = 100000364

ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.

Definition at line 9085 of file cv.hpp.

UNIMOD_ICPL = 100000365

ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.

Definition at line 9088 of file cv.hpp.

UNIMOD_Deamidated_18O_1_ = 100000366

Deamidated:18O(1): Deamidation in presence of O18.

Definition at line 9091 of file cv.hpp.

UNIMOD_Cys__Dha = 100000368

Cys->Dha: Dehydroalanine (from Cysteine).

Definition at line 9094 of file cv.hpp.

UNIMOD_Pro__Pyrrolidone = 100000369

Pro->Pyrrolidone: Pyrrolidone from Proline.

Definition at line 9097 of file cv.hpp.

UNIMOD_HMVK = 100000371

HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.

Definition at line 9100 of file cv.hpp.

UNIMOD_Arg__Orn = 100000372

Arg->Orn: Ornithine from Arginine.

Definition at line 9103 of file cv.hpp.

UNIMOD_Dehydro = 100000374

Dehydro: Half of a disulfide bridge.

Definition at line 9106 of file cv.hpp.

UNIMOD_Diphthamide = 100000375

Diphthamide: Diphthamide.

Definition at line 9109 of file cv.hpp.

UNIMOD_Hydroxyfarnesyl = 100000376

Hydroxyfarnesyl: Hydroxyfarnesyl.

Definition at line 9112 of file cv.hpp.

UNIMOD_Diacylglycerol = 100000377

Diacylglycerol: Diacylglycerol.

Definition at line 9115 of file cv.hpp.

UNIMOD_Carboxyethyl = 100000378

Carboxyethyl: Carboxyethyl.

Definition at line 9118 of file cv.hpp.

UNIMOD_Hypusine = 100000379

Hypusine: Hypusine.

Definition at line 9121 of file cv.hpp.

UNIMOD_Retinylidene = 100000380

Retinylidene: Retinal.

Definition at line 9124 of file cv.hpp.

UNIMOD_Lys__AminoadipicAcid = 100000381

Lys->AminoadipicAcid: Alpha-amino adipic acid.

Definition at line 9127 of file cv.hpp.

UNIMOD_Cys__PyruvicAcid = 100000382

Cys->PyruvicAcid: Pyruvic acid from N-term cys.

Definition at line 9130 of file cv.hpp.

UNIMOD_Ammonia_loss = 100000385

Ammonia-loss: Loss of ammonia.

Definition at line 9133 of file cv.hpp.

UNIMOD_Phycocyanobilin = 100000387

Phycocyanobilin: Phycocyanobilin.

Definition at line 9136 of file cv.hpp.

UNIMOD_Phycoerythrobilin = 100000388

Phycoerythrobilin: Phycoerythrobilin.

Definition at line 9139 of file cv.hpp.

UNIMOD_Phytochromobilin = 100000389

Phytochromobilin: Phytochromobilin.

Definition at line 9142 of file cv.hpp.

UNIMOD_Heme = 100000390

Heme: Heme.

Definition at line 9145 of file cv.hpp.

UNIMOD_Molybdopterin = 100000391

Molybdopterin: Molybdopterin.

Definition at line 9148 of file cv.hpp.

UNIMOD_Quinone = 100000392

Quinone: Quinone.

Definition at line 9151 of file cv.hpp.

UNIMOD_Glucosylgalactosyl = 100000393

Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.

Definition at line 9154 of file cv.hpp.

UNIMOD_GPIanchor = 100000394

GPIanchor: Glycosylphosphatidylinositol.

Definition at line 9157 of file cv.hpp.

UNIMOD_PhosphoribosyldephosphoCoA = 100000395

PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.

Definition at line 9160 of file cv.hpp.

UNIMOD_GlycerylPE = 100000396

GlycerylPE: Glycerylphosphorylethanolamine.

Definition at line 9163 of file cv.hpp.

UNIMOD_Triiodothyronine = 100000397

Triiodothyronine: Triiodo.

Definition at line 9166 of file cv.hpp.

UNIMOD_Thyroxine = 100000398

Thyroxine: Tetraiodo.

Definition at line 9169 of file cv.hpp.

UNIMOD_Tyr__Dha = 100000400

Tyr->Dha: Dehydroalanine (from Tyrosine).

Definition at line 9172 of file cv.hpp.

UNIMOD_Didehydro = 100000401

Didehydro: 2-amino-3-oxo-butanoic_acid.

Definition at line 9175 of file cv.hpp.

UNIMOD_Cys__Oxoalanine = 100000402

Cys->Oxoalanine: Oxoalanine.

Definition at line 9178 of file cv.hpp.

UNIMOD_Ser__LacticAcid = 100000403

Ser->LacticAcid: Lactic acid from N-term Ser.

Definition at line 9181 of file cv.hpp.

UNIMOD_Phosphoadenosine = 100000405

Phosphoadenosine: AMP.

Definition at line 9184 of file cv.hpp.

UNIMOD_Hydroxycinnamyl = 100000407

Hydroxycinnamyl: Hydroxycinnamyl.

Definition at line 9187 of file cv.hpp.

UNIMOD_Glycosyl = 100000408

Glycosyl: Glycosyl-L-hydroxyproline.

Definition at line 9190 of file cv.hpp.

UNIMOD_FMNH = 100000409

FMNH: Flavin mononucleotide.

Definition at line 9193 of file cv.hpp.

UNIMOD_Archaeol = 100000410

Archaeol: S-diphytanylglycerol diether.

Definition at line 9196 of file cv.hpp.

UNIMOD_Phenylisocyanate = 100000411

Phenylisocyanate: Phenyl isocyanate.

Definition at line 9199 of file cv.hpp.

UNIMOD_Phenylisocyanate_2H_5_ = 100000412

Phenylisocyanate:2H(5): D5-phenyl isocyanate.

Definition at line 9202 of file cv.hpp.

UNIMOD_Phosphoguanosine = 100000413

Phosphoguanosine: Phospho-guanosine.

Definition at line 9205 of file cv.hpp.

UNIMOD_Hydroxymethyl = 100000414

Hydroxymethyl: Hydroxymethyl.

Definition at line 9208 of file cv.hpp.

UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_ = 100000415

MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).

Definition at line 9211 of file cv.hpp.

UNIMOD_Dipyrrolylmethanemethyl = 100000416

Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.

Definition at line 9214 of file cv.hpp.

UNIMOD_PhosphoUridine = 100000417

PhosphoUridine: Uridine phosphodiester.

Definition at line 9217 of file cv.hpp.

UNIMOD_Glycerophospho = 100000419

Glycerophospho: Glycerophospho.

Definition at line 9220 of file cv.hpp.

UNIMOD_Carboxy__Thiocarboxy = 100000420

Carboxy->Thiocarboxy: Thiocarboxylic acid.

Definition at line 9223 of file cv.hpp.

UNIMOD_Sulfide = 100000421

Sulfide: Persulfide.

Definition at line 9226 of file cv.hpp.

UNIMOD_PyruvicAcidIminyl = 100000422

PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.

Definition at line 9229 of file cv.hpp.

UNIMOD_Delta_Se_1_ = 100000423

Delta:Se(1): Selenyl.

Definition at line 9232 of file cv.hpp.

UNIMOD_MolybdopterinGD = 100000424

MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).

Definition at line 9235 of file cv.hpp.

UNIMOD_Dioxidation = 100000425

Dioxidation: Dihydroxy.

Definition at line 9238 of file cv.hpp.

UNIMOD_Octanoyl = 100000426

Octanoyl: Octanoyl.

Definition at line 9241 of file cv.hpp.

UNIMOD_PhosphoHexNAc = 100000428

PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.

Definition at line 9244 of file cv.hpp.

UNIMOD_PhosphoHex = 100000429

PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.

Definition at line 9247 of file cv.hpp.

UNIMOD_Palmitoleyl = 100000431

Palmitoleyl: Palmitoleyl.

Definition at line 9250 of file cv.hpp.

UNIMOD_Cholesterol = 100000432

Cholesterol: Cholesterol ester.

Definition at line 9253 of file cv.hpp.

UNIMOD_Didehydroretinylidene = 100000433

Didehydroretinylidene: 3,4-didehydroretinylidene.

Definition at line 9256 of file cv.hpp.

UNIMOD_CHDH = 100000434

CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.

Definition at line 9259 of file cv.hpp.

UNIMOD_Methylpyrroline = 100000435

Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.

Definition at line 9262 of file cv.hpp.

UNIMOD_Hydroxyheme = 100000436

Hydroxyheme: Hydroxyheme.

Definition at line 9265 of file cv.hpp.

UNIMOD_MicrocinC7 = 100000437

MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.

Definition at line 9268 of file cv.hpp.

UNIMOD_Cyano = 100000438

Cyano: Cyano.

Definition at line 9271 of file cv.hpp.

UNIMOD_Diironsubcluster = 100000439

Diironsubcluster: Hydrogenase diiron subcluster.

Definition at line 9274 of file cv.hpp.

UNIMOD_Amidino = 100000440

Amidino: Amidino.

Definition at line 9277 of file cv.hpp.

UNIMOD_FMN = 100000442

FMN: O3-(riboflavin phosphoryl).

Definition at line 9280 of file cv.hpp.

UNIMOD_FMNC = 100000443

FMNC: S-(4a-FMN).

Definition at line 9283 of file cv.hpp.

UNIMOD_CuSMo = 100000444

CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.

Definition at line 9286 of file cv.hpp.

UNIMOD_Hydroxytrimethyl = 100000445

Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.

Definition at line 9289 of file cv.hpp.

UNIMOD_Deoxy = 100000447

Deoxy: Reduction.

Definition at line 9292 of file cv.hpp.

UNIMOD_Microcin = 100000448

Microcin: Microcin E492 siderophore ester from serine.

Definition at line 9295 of file cv.hpp.

UNIMOD_Decanoyl = 100000449

Decanoyl: Lipid.

Definition at line 9298 of file cv.hpp.

UNIMOD_Glu = 100000450

Glu: Monoglutamyl.

Definition at line 9301 of file cv.hpp.

UNIMOD_GluGlu = 100000451

GluGlu: Diglutamyl.

Definition at line 9304 of file cv.hpp.

UNIMOD_GluGluGlu = 100000452

GluGluGlu: Triglutamyl.

Definition at line 9307 of file cv.hpp.

UNIMOD_GluGluGluGlu = 100000453

GluGluGluGlu: Tetraglutamyl.

Definition at line 9310 of file cv.hpp.

UNIMOD_HexN = 100000454

HexN: Hexosamine.

Definition at line 9313 of file cv.hpp.

UNIMOD_Xlink_DMP_s = 100000455

Xlink:DMP-s: One end of crosslink attached, one end free.

Definition at line 9316 of file cv.hpp.

UNIMOD_Xlink_DMP = 100000456

Xlink:DMP: Both ends of crosslink attached to same peptide.

Definition at line 9319 of file cv.hpp.

UNIMOD_NDA = 100000457

NDA: Naphthalene-2,3-dicarboxaldehyde.

Definition at line 9322 of file cv.hpp.

UNIMOD_SPITC_13C_6_ = 100000464

SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).

Definition at line 9325 of file cv.hpp.

UNIMOD_AEC_MAEC = 100000472

AEC-MAEC: Aminoethylcysteine.

Definition at line 9328 of file cv.hpp.

UNIMOD_TMAB = 100000476

TMAB: 4-trimethyllammoniumbutyryl-.

Definition at line 9331 of file cv.hpp.

UNIMOD_TMAB_2H_9_ = 100000477

TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.

Definition at line 9334 of file cv.hpp.

UNIMOD_FTC = 100000478

FTC: Fluorescein-5-thiosemicarbazide.

Definition at line 9337 of file cv.hpp.

UNIMOD_Label_2H_4_ = 100000481

Label:2H(4): 4,4,5,5-D4 Lysine.

Definition at line 9340 of file cv.hpp.

UNIMOD_DHP = 100000488

DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.

Definition at line 9343 of file cv.hpp.

UNIMOD_Hep = 100000490

Hep: Heptose.

Definition at line 9346 of file cv.hpp.

UNIMOD_BADGE = 100000493

BADGE: Bisphenol A diglycidyl ether derivative.

Definition at line 9349 of file cv.hpp.

UNIMOD_CyDye_Cy3 = 100000494

CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.

Definition at line 9352 of file cv.hpp.

UNIMOD_CyDye_Cy5 = 100000495

CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.

Definition at line 9355 of file cv.hpp.

UNIMOD_BHTOH = 100000498

BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.

Definition at line 9358 of file cv.hpp.

UNIMOD_IGBP_13C_2_ = 100000499

IGBP:13C(2): Heavy IDBEST tag for quantitation.

Definition at line 9361 of file cv.hpp.

UNIMOD_Nmethylmaleimide_water = 100000500

Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.

Definition at line 9364 of file cv.hpp.

UNIMOD_PyMIC = 100000501

PyMIC: 3-methyl-2-pyridyl isocyanate.

Definition at line 9367 of file cv.hpp.

UNIMOD_LG_lactam_K = 100000503

LG-lactam-K: Levuglandinyl - lysine lactam adduct.

Definition at line 9370 of file cv.hpp.

UNIMOD_LG_Hlactam_K = 100000504

LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.

Definition at line 9373 of file cv.hpp.

UNIMOD_LG_lactam_R = 100000505

LG-lactam-R: Levuglandinyl - arginine lactam adduct.

Definition at line 9376 of file cv.hpp.

UNIMOD_LG_Hlactam_R = 100000506

LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.

Definition at line 9379 of file cv.hpp.

UNIMOD_Dimethyl_2H_4_13C_2_ = 100000510

Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.

Definition at line 9382 of file cv.hpp.

UNIMOD_Hex_2_ = 100000512

Hex(2): Lactosylation.

Definition at line 9385 of file cv.hpp.

UNIMOD_C8_QAT = 100000513

C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.

Definition at line 9388 of file cv.hpp.

UNIMOD_PropylNAGthiazoline = 100000514

PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.

Definition at line 9391 of file cv.hpp.

UNIMOD_FNEM = 100000515

FNEM: Fluorescein-5-maleimide.

Definition at line 9394 of file cv.hpp.

UNIMOD_Diethyl = 100000518

Diethyl: Diethylation, analogous to Dimethylation.

Definition at line 9397 of file cv.hpp.

UNIMOD_BisANS = 100000519

BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.

Definition at line 9400 of file cv.hpp.

UNIMOD_Piperidine = 100000520

Piperidine: Piperidination.

Definition at line 9403 of file cv.hpp.

UNIMOD_Maleimide_PEO2_Biotin = 100000522

Maleimide-PEO2-Biotin: Maleimide-Biotin.

Definition at line 9406 of file cv.hpp.

UNIMOD_Sulfo_NHS_LC_LC_Biotin = 100000523

Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.

Definition at line 9409 of file cv.hpp.

UNIMOD_CLIP_TRAQ_2 = 100000525

CLIP_TRAQ_2: CLIP_TRAQ_2.

Definition at line 9412 of file cv.hpp.

UNIMOD_Dethiomethyl = 100000526

Dethiomethyl: Prompt loss of side chain from oxidised Met.

Definition at line 9415 of file cv.hpp.

UNIMOD_Methyl_Deamidated = 100000528

Methyl+Deamidated: Deamidation followed by a methylation.

Definition at line 9418 of file cv.hpp.

UNIMOD_Delta_H_5_C_2_ = 100000529

Delta:H(5)C(2): Dimethylation of proline residue.

Definition at line 9421 of file cv.hpp.

UNIMOD_Cation_K = 100000530

Cation:K: Replacement of proton by potassium.

Definition at line 9424 of file cv.hpp.

UNIMOD_Cation_Cu_I_ = 100000531

Cation:Cu[I]: Replacement of proton by copper.

Definition at line 9427 of file cv.hpp.

UNIMOD_iTRAQ4plex114 = 100000532

iTRAQ4plex114: Accurate mass for 114.

Definition at line 9430 of file cv.hpp.

UNIMOD_iTRAQ4plex115 = 100000533

iTRAQ4plex115: Accurate mass for 115.

Definition at line 9433 of file cv.hpp.

UNIMOD_Dibromo = 100000534

Dibromo: Dibromo.

Definition at line 9436 of file cv.hpp.

UNIMOD_LRGG = 100000535

LRGG: Ubiquitination.

Definition at line 9439 of file cv.hpp.

UNIMOD_CLIP_TRAQ_3 = 100000536

CLIP_TRAQ_3: CLIP_TRAQ_3.

Definition at line 9442 of file cv.hpp.

UNIMOD_CLIP_TRAQ_4 = 100000537

CLIP_TRAQ_4: CLIP_TRAQ_4.

Definition at line 9445 of file cv.hpp.

UNIMOD_Biotin_Cayman_10141 = 100000538

Biotin:Cayman-10141: Was 15dB-biotin.

Definition at line 9448 of file cv.hpp.

UNIMOD_Biotin_Cayman_10013 = 100000539

Biotin:Cayman-10013: Was PGA1-biotin.

Definition at line 9451 of file cv.hpp.

UNIMOD_Ala__Ser = 100000540

Ala->Ser: Ala->Ser substitution.

Definition at line 9454 of file cv.hpp.

UNIMOD_Ala__Thr = 100000541

Ala->Thr: Ala->Thr substitution.

Definition at line 9457 of file cv.hpp.

UNIMOD_Ala__Asp = 100000542

Ala->Asp: Ala->Asp substitution.

Definition at line 9460 of file cv.hpp.

UNIMOD_Ala__Pro = 100000543

Ala->Pro: Ala->Pro substitution.

Definition at line 9463 of file cv.hpp.

UNIMOD_Ala__Gly = 100000544

Ala->Gly: Ala->Gly substitution.

Definition at line 9466 of file cv.hpp.

UNIMOD_Ala__Glu = 100000545

Ala->Glu: Ala->Glu substitution.

Definition at line 9469 of file cv.hpp.

UNIMOD_Ala__Val = 100000546

Ala->Val: Ala->Val substitution.

Definition at line 9472 of file cv.hpp.

UNIMOD_Cys__Phe = 100000547

Cys->Phe: Cys->Phe substitution.

Definition at line 9475 of file cv.hpp.

UNIMOD_Cys__Ser = 100000548

Cys->Ser: Cys->Ser substitution.

Definition at line 9478 of file cv.hpp.

UNIMOD_Cys__Trp = 100000549

Cys->Trp: Cys->Trp substitution.

Definition at line 9481 of file cv.hpp.

UNIMOD_Cys__Tyr = 100000550

Cys->Tyr: Cys->Tyr substitution.

Definition at line 9484 of file cv.hpp.

UNIMOD_Cys__Arg = 100000551

Cys->Arg: Cys->Arg substitution.

Definition at line 9487 of file cv.hpp.

UNIMOD_Cys__Gly = 100000552

Cys->Gly: Cys->Gly substitution.

Definition at line 9490 of file cv.hpp.

UNIMOD_Asp__Ala = 100000553

Asp->Ala: Asp->Ala substitution.

Definition at line 9493 of file cv.hpp.

UNIMOD_Asp__His = 100000554

Asp->His: Asp->His substitution.

Definition at line 9496 of file cv.hpp.

UNIMOD_Asp__Asn = 100000555

Asp->Asn: Asp->Asn substitution.

Definition at line 9499 of file cv.hpp.

UNIMOD_Asp__Gly = 100000556

Asp->Gly: Asp->Gly substitution.

Definition at line 9502 of file cv.hpp.

UNIMOD_Asp__Tyr = 100000557

Asp->Tyr: Asp->Tyr substitution.

Definition at line 9505 of file cv.hpp.

UNIMOD_Asp__Glu = 100000558

Asp->Glu: Asp->Glu substitution.

Definition at line 9508 of file cv.hpp.

UNIMOD_Asp__Val = 100000559

Asp->Val: Asp->Val substitution.

Definition at line 9511 of file cv.hpp.

UNIMOD_Glu__Ala = 100000560

Glu->Ala: Glu->Ala substitution.

Definition at line 9514 of file cv.hpp.

UNIMOD_Glu__Gln = 100000561

Glu->Gln: Glu->Gln substitution.

Definition at line 9517 of file cv.hpp.

UNIMOD_Glu__Asp = 100000562

Glu->Asp: Glu->Asp substitution.

Definition at line 9520 of file cv.hpp.

UNIMOD_Glu__Lys = 100000563

Glu->Lys: Glu->Lys substitution.

Definition at line 9523 of file cv.hpp.

UNIMOD_Glu__Gly = 100000564

Glu->Gly: Glu->Gly substitution.

Definition at line 9526 of file cv.hpp.

UNIMOD_Glu__Val = 100000565

Glu->Val: Glu->Val substitution.

Definition at line 9529 of file cv.hpp.

UNIMOD_Phe__Ser = 100000566

Phe->Ser: Phe->Ser substitution.

Definition at line 9532 of file cv.hpp.

UNIMOD_Phe__Cys = 100000567

Phe->Cys: Phe->Cys substitution.

Definition at line 9535 of file cv.hpp.

UNIMOD_Phe__Xle = 100000568

Phe->Xle: Phe->Leu/Ile substitution.

Definition at line 9538 of file cv.hpp.

UNIMOD_Phe__Tyr = 100000569

Phe->Tyr: Phe->Tyr substitution.

Definition at line 9541 of file cv.hpp.

UNIMOD_Phe__Val = 100000570

Phe->Val: Phe->Val substitution.

Definition at line 9544 of file cv.hpp.

UNIMOD_Gly__Ala = 100000571

Gly->Ala: Gly->Ala substitution.

Definition at line 9547 of file cv.hpp.

UNIMOD_Gly__Ser = 100000572

Gly->Ser: Gly->Ser substitution.

Definition at line 9550 of file cv.hpp.

UNIMOD_Gly__Trp = 100000573

Gly->Trp: Gly->Trp substitution.

Definition at line 9553 of file cv.hpp.

UNIMOD_Gly__Glu = 100000574

Gly->Glu: Gly->Glu substitution.

Definition at line 9556 of file cv.hpp.

UNIMOD_Gly__Val = 100000575

Gly->Val: Gly->Val substitution.

Definition at line 9559 of file cv.hpp.

UNIMOD_Gly__Asp = 100000576

Gly->Asp: Gly->Asp substitution.

Definition at line 9562 of file cv.hpp.

UNIMOD_Gly__Cys = 100000577

Gly->Cys: Gly->Cys substitution.

Definition at line 9565 of file cv.hpp.

UNIMOD_Gly__Arg = 100000578

Gly->Arg: Gly->Arg substitution.

Definition at line 9568 of file cv.hpp.

UNIMOD_His__Pro = 100000580

His->Pro: His->Pro substitution.

Definition at line 9571 of file cv.hpp.

UNIMOD_His__Tyr = 100000581

His->Tyr: His->Tyr substitution.

Definition at line 9574 of file cv.hpp.

UNIMOD_His__Gln = 100000582

His->Gln: His->Gln substitution.

Definition at line 9577 of file cv.hpp.

UNIMOD_His__Arg = 100000584

His->Arg: His->Arg substitution.

Definition at line 9580 of file cv.hpp.

UNIMOD_His__Xle = 100000585

His->Xle: His->Leu/Ile substitution.

Definition at line 9583 of file cv.hpp.

UNIMOD_Xle__Thr = 100000588

Xle->Thr: Leu/Ile->Thr substitution.

Definition at line 9586 of file cv.hpp.

UNIMOD_Xle__Asn = 100000589

Xle->Asn: Leu/Ile->Asn substitution.

Definition at line 9589 of file cv.hpp.

UNIMOD_Xle__Lys = 100000590

Xle->Lys: Leu/Ile->Lys substitution.

Definition at line 9592 of file cv.hpp.

UNIMOD_Lys__Thr = 100000594

Lys->Thr: Lys->Thr substitution.

Definition at line 9595 of file cv.hpp.

UNIMOD_Lys__Asn = 100000595

Lys->Asn: Lys->Asn substitution.

Definition at line 9598 of file cv.hpp.

UNIMOD_Lys__Glu = 100000596

Lys->Glu: Lys->Glu substitution.

Definition at line 9601 of file cv.hpp.

UNIMOD_Lys__Gln = 100000597

Lys->Gln: Lys->Gln substitution.

Definition at line 9604 of file cv.hpp.

UNIMOD_Lys__Met = 100000598

Lys->Met: Lys->Met substitution.

Definition at line 9607 of file cv.hpp.

UNIMOD_Lys__Arg = 100000599

Lys->Arg: Lys->Arg substitution.

Definition at line 9610 of file cv.hpp.

UNIMOD_Lys__Xle = 100000600

Lys->Xle: Lys->Leu/Ile substitution.

Definition at line 9613 of file cv.hpp.

UNIMOD_Xle__Ser = 100000601

Xle->Ser: Leu/Ile->Ser substitution.

Definition at line 9616 of file cv.hpp.

UNIMOD_Xle__Phe = 100000602

Xle->Phe: Leu/Ile->Phe substitution.

Definition at line 9619 of file cv.hpp.

UNIMOD_Xle__Trp = 100000603

Xle->Trp: Leu/Ile->Trp substitution.

Definition at line 9622 of file cv.hpp.

UNIMOD_Xle__Pro = 100000604

Xle->Pro: Leu/Ile->Pro substitution.

Definition at line 9625 of file cv.hpp.

UNIMOD_Xle__Val = 100000605

Xle->Val: Leu/Ile->Val substitution.

Definition at line 9628 of file cv.hpp.

UNIMOD_Xle__His = 100000606

Xle->His: Leu/Ile->His substitution.

Definition at line 9631 of file cv.hpp.

UNIMOD_Xle__Gln = 100000607

Xle->Gln: Leu/Ile->Gln substitution.

Definition at line 9634 of file cv.hpp.

UNIMOD_Xle__Met = 100000608

Xle->Met: Leu/Ile->Met substitution.

Definition at line 9637 of file cv.hpp.

UNIMOD_Xle__Arg = 100000609

Xle->Arg: Leu/Ile->Arg substitution.

Definition at line 9640 of file cv.hpp.

UNIMOD_Met__Thr = 100000610

Met->Thr: Met->Thr substitution.

Definition at line 9643 of file cv.hpp.

UNIMOD_Met__Arg = 100000611

Met->Arg: Met->Arg substitution.

Definition at line 9646 of file cv.hpp.

UNIMOD_Met__Lys = 100000613

Met->Lys: Met->Lys substitution.

Definition at line 9649 of file cv.hpp.

UNIMOD_Met__Xle = 100000614

Met->Xle: Met->Leu/Ile substitution.

Definition at line 9652 of file cv.hpp.

UNIMOD_Met__Val = 100000615

Met->Val: Met->Val substitution.

Definition at line 9655 of file cv.hpp.

UNIMOD_Asn__Ser = 100000616

Asn->Ser: Asn->Ser substitution.

Definition at line 9658 of file cv.hpp.

UNIMOD_Asn__Thr = 100000617

Asn->Thr: Asn->Thr substitution.

Definition at line 9661 of file cv.hpp.

UNIMOD_Asn__Lys = 100000618

Asn->Lys: Asn->Lys substitution.

Definition at line 9664 of file cv.hpp.

UNIMOD_Asn__Tyr = 100000619

Asn->Tyr: Asn->Tyr substitution.

Definition at line 9667 of file cv.hpp.

UNIMOD_Asn__His = 100000620

Asn->His: Asn->His substitution.

Definition at line 9670 of file cv.hpp.

UNIMOD_Asn__Asp = 100000621

Asn->Asp: Asn->Asp substitution.

Definition at line 9673 of file cv.hpp.

UNIMOD_Asn__Xle = 100000622

Asn->Xle: Asn->Leu/Ile substitution.

Definition at line 9676 of file cv.hpp.

UNIMOD_Pro__Ser = 100000623

Pro->Ser: Pro->Ser substitution.

Definition at line 9679 of file cv.hpp.

UNIMOD_Pro__Ala = 100000624

Pro->Ala: Pro->Ala substitution.

Definition at line 9682 of file cv.hpp.

UNIMOD_Pro__His = 100000625

Pro->His: Pro->His substitution.

Definition at line 9685 of file cv.hpp.

UNIMOD_Pro__Gln = 100000626

Pro->Gln: Pro->Gln substitution.

Definition at line 9688 of file cv.hpp.

UNIMOD_Pro__Thr = 100000627

Pro->Thr: Pro->Thr substitution.

Definition at line 9691 of file cv.hpp.

UNIMOD_Pro__Arg = 100000628

Pro->Arg: Pro->Arg substitution.

Definition at line 9694 of file cv.hpp.

UNIMOD_Pro__Xle = 100000629

Pro->Xle: Pro->Leu/Ile substitution.

Definition at line 9697 of file cv.hpp.

UNIMOD_Gln__Pro = 100000630

Gln->Pro: Gln->Pro substitution.

Definition at line 9700 of file cv.hpp.

UNIMOD_Gln__Lys = 100000631

Gln->Lys: Gln->Lys substitution.

Definition at line 9703 of file cv.hpp.

UNIMOD_Gln__Glu = 100000632

Gln->Glu: Gln->Glu substitution.

Definition at line 9706 of file cv.hpp.

UNIMOD_Gln__His = 100000633

Gln->His: Gln->His substitution.

Definition at line 9709 of file cv.hpp.

UNIMOD_Gln__Arg = 100000634

Gln->Arg: Gln->Arg substitution.

Definition at line 9712 of file cv.hpp.

UNIMOD_Gln__Xle = 100000635

Gln->Xle: Gln->Leu/Ile substitution.

Definition at line 9715 of file cv.hpp.

UNIMOD_Arg__Ser = 100000636

Arg->Ser: Arg->Ser substitution.

Definition at line 9718 of file cv.hpp.

UNIMOD_Arg__Trp = 100000637

Arg->Trp: Arg->Trp substitution.

Definition at line 9721 of file cv.hpp.

UNIMOD_Arg__Thr = 100000638

Arg->Thr: Arg->Thr substitution.

Definition at line 9724 of file cv.hpp.

UNIMOD_Arg__Pro = 100000639

Arg->Pro: Arg->Pro substitution.

Definition at line 9727 of file cv.hpp.

UNIMOD_Arg__Lys = 100000640

Arg->Lys: Arg->Lys substitution.

Definition at line 9730 of file cv.hpp.

UNIMOD_Arg__His = 100000641

Arg->His: Arg->His substitution.

Definition at line 9733 of file cv.hpp.

UNIMOD_Arg__Gln = 100000642

Arg->Gln: Arg->Gln substitution.

Definition at line 9736 of file cv.hpp.

UNIMOD_Arg__Met = 100000643

Arg->Met: Arg->Met substitution.

Definition at line 9739 of file cv.hpp.

UNIMOD_Arg__Cys = 100000644

Arg->Cys: Arg->Cys substitution.

Definition at line 9742 of file cv.hpp.

UNIMOD_Arg__Xle = 100000645

Arg->Xle: Arg->Leu/Ile substitution.

Definition at line 9745 of file cv.hpp.

UNIMOD_Arg__Gly = 100000646

Arg->Gly: Arg->Gly substitution.

Definition at line 9748 of file cv.hpp.

UNIMOD_Ser__Phe = 100000647

Ser->Phe: Ser->Phe substitution.

Definition at line 9751 of file cv.hpp.

UNIMOD_Ser__Ala = 100000648

Ser->Ala: Ser->Ala substitution.

Definition at line 9754 of file cv.hpp.

UNIMOD_Ser__Trp = 100000649

Ser->Trp: Ser->Trp substitution.

Definition at line 9757 of file cv.hpp.

UNIMOD_Ser__Thr = 100000650

Ser->Thr: Ser->Thr substitution.

Definition at line 9760 of file cv.hpp.

UNIMOD_Ser__Asn = 100000651

Ser->Asn: Ser->Asn substitution.

Definition at line 9763 of file cv.hpp.

UNIMOD_Ser__Pro = 100000652

Ser->Pro: Ser->Pro substitution.

Definition at line 9766 of file cv.hpp.

UNIMOD_Ser__Tyr = 100000653

Ser->Tyr: Ser->Tyr substitution.

Definition at line 9769 of file cv.hpp.

UNIMOD_Ser__Cys = 100000654

Ser->Cys: Ser->Cys substitution.

Definition at line 9772 of file cv.hpp.

UNIMOD_Ser__Arg = 100000655

Ser->Arg: Ser->Arg substitution.

Definition at line 9775 of file cv.hpp.

UNIMOD_Ser__Xle = 100000656

Ser->Xle: Ser->Leu/Ile substitution.

Definition at line 9778 of file cv.hpp.

UNIMOD_Ser__Gly = 100000657

Ser->Gly: Ser->Gly substitution.

Definition at line 9781 of file cv.hpp.

UNIMOD_Thr__Ser = 100000658

Thr->Ser: Thr->Ser substitution.

Definition at line 9784 of file cv.hpp.

UNIMOD_Thr__Ala = 100000659

Thr->Ala: Thr->Ala substitution.

Definition at line 9787 of file cv.hpp.

UNIMOD_Thr__Asn = 100000660

Thr->Asn: Thr->Asn substitution.

Definition at line 9790 of file cv.hpp.

UNIMOD_Thr__Lys = 100000661

Thr->Lys: Thr->Lys substitution.

Definition at line 9793 of file cv.hpp.

UNIMOD_Thr__Pro = 100000662

Thr->Pro: Thr->Pro substitution.

Definition at line 9796 of file cv.hpp.

UNIMOD_Thr__Met = 100000663

Thr->Met: Thr->Met substitution.

Definition at line 9799 of file cv.hpp.

UNIMOD_Thr__Xle = 100000664

Thr->Xle: Thr->Leu/Ile substitution.

Definition at line 9802 of file cv.hpp.

UNIMOD_Thr__Arg = 100000665

Thr->Arg: Thr->Arg substitution.

Definition at line 9805 of file cv.hpp.

UNIMOD_Val__Phe = 100000666

Val->Phe: Val->Phe substitution.

Definition at line 9808 of file cv.hpp.

UNIMOD_Val__Ala = 100000667

Val->Ala: Val->Ala substitution.

Definition at line 9811 of file cv.hpp.

UNIMOD_Val__Glu = 100000668

Val->Glu: Val->Glu substitution.

Definition at line 9814 of file cv.hpp.

UNIMOD_Val__Met = 100000669

Val->Met: Val->Met substitution.

Definition at line 9817 of file cv.hpp.

UNIMOD_Val__Asp = 100000670

Val->Asp: Val->Asp substitution.

Definition at line 9820 of file cv.hpp.

UNIMOD_Val__Xle = 100000671

Val->Xle: Val->Leu/Ile substitution.

Definition at line 9823 of file cv.hpp.

UNIMOD_Val__Gly = 100000672

Val->Gly: Val->Gly substitution.

Definition at line 9826 of file cv.hpp.

UNIMOD_Trp__Ser = 100000673

Trp->Ser: Trp->Ser substitution.

Definition at line 9829 of file cv.hpp.

UNIMOD_Trp__Cys = 100000674

Trp->Cys: Trp->Cys substitution.

Definition at line 9832 of file cv.hpp.

UNIMOD_Trp__Arg = 100000675

Trp->Arg: Trp->Arg substitution.

Definition at line 9835 of file cv.hpp.

UNIMOD_Trp__Gly = 100000676

Trp->Gly: Trp->Gly substitution.

Definition at line 9838 of file cv.hpp.

UNIMOD_Trp__Xle = 100000677

Trp->Xle: Trp->Leu/Ile substitution.

Definition at line 9841 of file cv.hpp.

UNIMOD_Tyr__Phe = 100000678

Tyr->Phe: Tyr->Phe substitution.

Definition at line 9844 of file cv.hpp.

UNIMOD_Tyr__Ser = 100000679

Tyr->Ser: Tyr->Ser substitution.

Definition at line 9847 of file cv.hpp.

UNIMOD_Tyr__Asn = 100000680

Tyr->Asn: Tyr->Asn substitution.

Definition at line 9850 of file cv.hpp.

UNIMOD_Tyr__His = 100000681

Tyr->His: Tyr->His substitution.

Definition at line 9853 of file cv.hpp.

UNIMOD_Tyr__Asp = 100000682

Tyr->Asp: Tyr->Asp substitution.

Definition at line 9856 of file cv.hpp.

UNIMOD_Tyr__Cys = 100000683

Tyr->Cys: Tyr->Cys substitution.

Definition at line 9859 of file cv.hpp.

UNIMOD_BDMAPP = 100000684

BDMAPP: Mass Defect Tag on lysine e-amino.

Definition at line 9862 of file cv.hpp.

UNIMOD_NA_LNO2 = 100000685

NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.

Definition at line 9865 of file cv.hpp.

UNIMOD_NA_OA_NO2 = 100000686

NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.

Definition at line 9868 of file cv.hpp.

UNIMOD_ICPL_2H_4_ = 100000687

ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.

Definition at line 9871 of file cv.hpp.

UNIMOD_Label_13C_6_15N_1_ = 100000695

Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.

Definition at line 9874 of file cv.hpp.

UNIMOD_Label_2H_9_13C_6_15N_2_ = 100000696

Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.

Definition at line 9877 of file cv.hpp.

UNIMOD_NIC = 100000697

NIC: Nicotinic Acid.

Definition at line 9880 of file cv.hpp.

UNIMOD_dNIC = 100000698

dNIC: Deuterated Nicotinic Acid.

Definition at line 9883 of file cv.hpp.

UNIMOD_HNE_Delta_H_2_O = 100000720

HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.

Definition at line 9886 of file cv.hpp.

UNIMOD_4_ONE = 100000721

4-ONE: 4-Oxononenal (ONE).

Definition at line 9889 of file cv.hpp.

UNIMOD_O_Dimethylphosphate = 100000723

O-Dimethylphosphate: O-Dimethylphosphorylation.

Definition at line 9892 of file cv.hpp.

UNIMOD_O_Methylphosphate = 100000724

O-Methylphosphate: O-Methylphosphorylation.

Definition at line 9895 of file cv.hpp.

UNIMOD_Diethylphosphate = 100000725

Diethylphosphate: O-Diethylphosphorylation.

Definition at line 9898 of file cv.hpp.

UNIMOD_Ethylphosphate = 100000726

Ethylphosphate: O-Ethylphosphorylation.

Definition at line 9901 of file cv.hpp.

UNIMOD_O_pinacolylmethylphosphonate = 100000727

O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.

Definition at line 9904 of file cv.hpp.

UNIMOD_Methylphosphonate = 100000728

Methylphosphonate: Methylphosphonylation.

Definition at line 9907 of file cv.hpp.

UNIMOD_O_Isopropylmethylphosphonate = 100000729

O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.

Definition at line 9910 of file cv.hpp.

UNIMOD_iTRAQ8plex = 100000730

iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.

Definition at line 9913 of file cv.hpp.

UNIMOD_iTRAQ8plex_13C_6_15N_2_ = 100000731

iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.

Definition at line 9916 of file cv.hpp.

UNIMOD_Ethanolamine = 100000734

Ethanolamine: Carboxyl modification with ethanolamine.

Definition at line 9919 of file cv.hpp.

UNIMOD_DTT_ST = 100000735

DTT_ST: Dithiothreitol (DTT).

Definition at line 9922 of file cv.hpp.

UNIMOD_DTT_C = 100000736

DTT_C: Dithiothreitol (DTT) on Cys.

Definition at line 9925 of file cv.hpp.

UNIMOD_TMT6plex = 100000737

TMT6plex: Sixplex Tandem Mass Tag®.

Definition at line 9928 of file cv.hpp.

Referenced by testConversion().

UNIMOD_TMT2plex = 100000738

TMT2plex: Duplex Tandem Mass Tag®.

Definition at line 9931 of file cv.hpp.

UNIMOD_TMT = 100000739

TMT: Native Tandem Mass Tag®.

Definition at line 9934 of file cv.hpp.

UNIMOD_ExacTagThiol = 100000740

ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.

Definition at line 9937 of file cv.hpp.

UNIMOD_ExacTagAmine = 100000741

ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.

Definition at line 9940 of file cv.hpp.

UNIMOD_4_ONE_Delta_H__2_O__1_ = 100000743

4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.

Definition at line 9943 of file cv.hpp.

UNIMOD_NO_SMX_SEMD = 100000744

NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.

Definition at line 9946 of file cv.hpp.

UNIMOD_NO_SMX_SMCT = 100000745

NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.

Definition at line 9949 of file cv.hpp.

UNIMOD_NO_SMX_SIMD = 100000746

NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.

Definition at line 9952 of file cv.hpp.

UNIMOD_Malonyl = 100000747

Malonyl: Malonylation of C and S residues.

Definition at line 9955 of file cv.hpp.

UNIMOD_3sulfo = 100000748

3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.

Definition at line 9958 of file cv.hpp.

UNIMOD_trifluoro = 100000750

trifluoro: Trifluoroleucine replacement of leucine.

Definition at line 9961 of file cv.hpp.

UNIMOD_TNBS = 100000751

TNBS: Tri nitro benzene.

Definition at line 9964 of file cv.hpp.

UNIMOD_IDEnT = 100000762

IDEnT: Isotope Distribution Encoded Tag.

Definition at line 9967 of file cv.hpp.

UNIMOD_DTT_ST_2H_6_ = 100000763

DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines.

Definition at line 9970 of file cv.hpp.

UNIMOD_DTT_C_2H_6_ = 100000764

DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines.

Definition at line 9973 of file cv.hpp.

UNIMOD_Met_loss = 100000765

Met-loss: Removal of initiator methionine from protein N-terminus.

Definition at line 9976 of file cv.hpp.

UNIMOD_Met_loss_Acetyl = 100000766

Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.

Definition at line 9979 of file cv.hpp.

UNIMOD_Menadione_HQ = 100000767

Menadione-HQ: Menadione hydroquinone derivative.

Definition at line 9982 of file cv.hpp.

UNIMOD_Methyl_Acetyl_2H_3_ = 100000768

Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.

Definition at line 9985 of file cv.hpp.

UNIMOD_lapachenole = 100000771

lapachenole: Lapachenole photochemically added to cysteine.

Definition at line 9988 of file cv.hpp.

UNIMOD_Label_13C_5_ = 100000772

Label:13C(5): 13C(5) Silac label.

Definition at line 9991 of file cv.hpp.

UNIMOD_maleimide = 100000773

maleimide: Maleimide.

Definition at line 9994 of file cv.hpp.

UNIMOD_Biotin_phenacyl = 100000774

Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.

Definition at line 9997 of file cv.hpp.

UNIMOD_Carboxymethyl_13C_2_ = 100000775

Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.

Definition at line 10000 of file cv.hpp.

UNIMOD_NEM_2H_5_ = 100000776

NEM:2H(5): D5 N-ethylmaleimide on cysteines.

Definition at line 10003 of file cv.hpp.

UNIMOD_AEC_MAEC_2H_4_ = 100000792

AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.

Definition at line 10006 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_ = 100000793

Hex(1)HexNAc(1): Hex1HexNAc1.

Definition at line 10009 of file cv.hpp.

UNIMOD_Label_13C_6__GG = 100000799

Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.

Definition at line 10012 of file cv.hpp.

UNIMOD_Biotin_Thermo_21345 = 100000800

Biotin:Thermo-21345: Was PentylamineBiotin.

Definition at line 10015 of file cv.hpp.

UNIMOD_Pentylamine = 100000801

Pentylamine: Labeling transglutaminase substrate on glutamine side chain.

Definition at line 10018 of file cv.hpp.

UNIMOD_Biotin_Thermo_21360 = 100000811

Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.

Definition at line 10021 of file cv.hpp.

UNIMOD_Cy3b_maleimide = 100000821

Cy3b-maleimide: Fluorescent dye that labels cysteines.

Definition at line 10024 of file cv.hpp.

UNIMOD_Gly_loss_Amide = 100000822

Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.

Definition at line 10027 of file cv.hpp.

UNIMOD_BMOE = 100000824

BMOE: Addition of BMOE crosslinker.

Definition at line 10030 of file cv.hpp.

UNIMOD_DFDNB = 100000825

DFDNB: Addition of DFDNB crosslinker.

Definition at line 10033 of file cv.hpp.

UNIMOD_TMPP_Ac = 100000827

TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.

Definition at line 10036 of file cv.hpp.

UNIMOD_Dihydroxyimidazolidine = 100000830

Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.

Definition at line 10039 of file cv.hpp.

UNIMOD_Label_2H_4__Acetyl = 100000834

Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.

Definition at line 10042 of file cv.hpp.

UNIMOD_Label_13C_6__Acetyl = 100000835

Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.

Definition at line 10045 of file cv.hpp.

UNIMOD_Label_13C_6_15N_2__Acetyl = 100000836

Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.

Definition at line 10048 of file cv.hpp.

UNIMOD_Arg__Npo = 100000837

Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.

Definition at line 10051 of file cv.hpp.

UNIMOD_EQIGG = 100000846

EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.

Definition at line 10054 of file cv.hpp.

UNIMOD_Arg2PG = 100000848

Arg2PG: Adduct of phenylglyoxal with Arg.

Definition at line 10057 of file cv.hpp.

UNIMOD_cGMP = 100000849

cGMP: S-guanylation.

Definition at line 10060 of file cv.hpp.

UNIMOD_cGMP_RMP_loss = 100000851

cGMP+RMP-loss: S-guanylation-2.

Definition at line 10063 of file cv.hpp.

UNIMOD_Label_2H_4__GG = 100000853

Label:2H(4)+GG: Ubiquitination 2H4 lysine.

Definition at line 10066 of file cv.hpp.

UNIMOD_MG_H1 = 100000859

MG-H1: Methylglyoxal-derived hydroimidazolone.

Definition at line 10069 of file cv.hpp.

UNIMOD_G_H1 = 100000860

G-H1: Glyoxal-derived hydroimiadazolone.

Definition at line 10072 of file cv.hpp.

UNIMOD_ZGB = 100000861

ZGB: NHS ester linked Green Fluorescent Bodipy Dye.

Definition at line 10075 of file cv.hpp.

UNIMOD_Label_13C_1_2H_3_ = 100000862

Label:13C(1)2H(3): SILAC.

Definition at line 10078 of file cv.hpp.

UNIMOD_Label_13C_6_15N_2__GG = 100000864

Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.

Definition at line 10081 of file cv.hpp.

UNIMOD_ICPL_13C_6_2H_4_ = 100000866

ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.

Definition at line 10084 of file cv.hpp.

UNIMOD_QEQTGG = 100000876

QEQTGG: SUMOylation by SUMO-1.

Definition at line 10087 of file cv.hpp.

UNIMOD_QQQTGG = 100000877

QQQTGG: SUMOylation by SUMO-2/3.

Definition at line 10090 of file cv.hpp.

UNIMOD_Bodipy = 100000878

Bodipy: Bodipy modifications onto cysteine.

Definition at line 10093 of file cv.hpp.

UNIMOD_Biotin_Thermo_21325 = 100000884

Biotin:Thermo-21325: Was ChromoBiotin.

Definition at line 10096 of file cv.hpp.

UNIMOD_Label_13C_1_2H_3__Oxidation = 100000885

Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.

Definition at line 10099 of file cv.hpp.

UNIMOD_HydroxymethylOP = 100000886

HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.

Definition at line 10102 of file cv.hpp.

UNIMOD_MDCC = 100000887

MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).

Definition at line 10105 of file cv.hpp.

UNIMOD_mTRAQ = 100000888

mTRAQ: MTRAQ light.

Definition at line 10108 of file cv.hpp.

UNIMOD_mTRAQ_13C_3_15N_1_ = 100000889

mTRAQ:13C(3)15N(1): MTRAQ medium.

Definition at line 10111 of file cv.hpp.

UNIMOD_DyLight_maleimide = 100000890

DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.

Definition at line 10114 of file cv.hpp.

UNIMOD_Methyl_PEO12_Maleimide = 100000891

Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.

Definition at line 10117 of file cv.hpp.

UNIMOD_CarbamidomethylDTT = 100000893

CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.

Definition at line 10120 of file cv.hpp.

UNIMOD_CarboxymethylDTT = 100000894

CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.

Definition at line 10123 of file cv.hpp.

UNIMOD_Biotin_PEG_PRA = 100000895

Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.

Definition at line 10126 of file cv.hpp.

UNIMOD_Met__Aha = 100000896

Met->Aha: Methionine replacement by azido homoalanine.

Definition at line 10129 of file cv.hpp.

UNIMOD_Label_15N_4_ = 100000897

Label:15N(4): SILAC 15N(4).

Definition at line 10132 of file cv.hpp.

UNIMOD_pyrophospho = 100000898

pyrophospho: Pyrophosphorylation of Ser/Thr.

Definition at line 10135 of file cv.hpp.

UNIMOD_Met__Hpg = 100000899

Met->Hpg: Methionine replacement by homopropargylglycine.

Definition at line 10138 of file cv.hpp.

UNIMOD_4AcAllylGal = 100000901

4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.

Definition at line 10141 of file cv.hpp.

UNIMOD_DimethylArsino = 100000902

DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.

Definition at line 10144 of file cv.hpp.

UNIMOD_Lys__CamCys = 100000903

Lys->CamCys: Lys->Cys substitution and carbamidomethylation.

Definition at line 10147 of file cv.hpp.

UNIMOD_Phe__CamCys = 100000904

Phe->CamCys: Phe->Cys substitution and carbamidomethylation.

Definition at line 10150 of file cv.hpp.

UNIMOD_Leu__MetOx = 100000905

Leu->MetOx: Leu->Met substitution and sulfoxidation.

Definition at line 10153 of file cv.hpp.

UNIMOD_Lys__MetOx = 100000906

Lys->MetOx: Lys->Met substitution and sulfoxidation.

Definition at line 10156 of file cv.hpp.

UNIMOD_Galactosyl = 100000907

Galactosyl: Gluconoylation.

Definition at line 10159 of file cv.hpp.

UNIMOD_SMCC_maleimide = 100000908

SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.

Definition at line 10162 of file cv.hpp.

UNIMOD_Bacillosamine = 100000910

Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.

Definition at line 10165 of file cv.hpp.

UNIMOD_MTSL = 100000911

MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).

Definition at line 10168 of file cv.hpp.

UNIMOD_HNE_BAHAH = 100000912

HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.

Definition at line 10171 of file cv.hpp.

UNIMOD_Methylmalonylation = 100000914

Methylmalonylation: Methylmalonylation on Serine.

Definition at line 10174 of file cv.hpp.

UNIMOD_Ethoxyformyl = 100000915

Ethoxyformyl: Ethoxyformylation.

Definition at line 10177 of file cv.hpp.

UNIMOD_Label_13C_4_15N_2__GG = 100000923

Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.

Definition at line 10180 of file cv.hpp.

UNIMOD_ethylamino = 100000926

ethylamino: Ethyl amino.

Definition at line 10183 of file cv.hpp.

UNIMOD_MercaptoEthanol = 100000928

MercaptoEthanol: 2-OH-ethyl thio-Ser.

Definition at line 10186 of file cv.hpp.

UNIMOD_Ethyl_Deamidated = 100000931

Ethyl+Deamidated: Deamidation followed by esterification with ethanol.

Definition at line 10189 of file cv.hpp.

UNIMOD_VFQQQTGG = 100000932

VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).

Definition at line 10192 of file cv.hpp.

UNIMOD_VIEVYQEQTGG = 100000933

VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).

Definition at line 10195 of file cv.hpp.

UNIMOD_AMTzHexNAc2 = 100000934

AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.

Definition at line 10198 of file cv.hpp.

UNIMOD_Atto495Maleimide = 100000935

Atto495Maleimide: High molecular absorption maleimide label for proteins.

Definition at line 10201 of file cv.hpp.

UNIMOD_Chlorination = 100000936

Chlorination: Chlorination of tyrosine residues.

Definition at line 10204 of file cv.hpp.

UNIMOD_dichlorination = 100000937

dichlorination: Dichlorination.

Definition at line 10207 of file cv.hpp.

UNIMOD_AROD = 100000938

AROD: Cysteine modifier.

Definition at line 10210 of file cv.hpp.

UNIMOD_Cys__methylaminoAla = 100000939

Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.

Definition at line 10213 of file cv.hpp.

UNIMOD_Cys__ethylaminoAla = 100000940

Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.

Definition at line 10216 of file cv.hpp.

UNIMOD_DNPS = 100000941

DNPS: 2,4-Dinitrobenzenesulfenyl.

Definition at line 10219 of file cv.hpp.

UNIMOD_SulfoGMBS = 100000942

SulfoGMBS: High molecular absorption label for proteins.

Definition at line 10222 of file cv.hpp.

UNIMOD_DimethylamineGMBS = 100000943

DimethylamineGMBS: Modified GMBS X linker for proteins.

Definition at line 10225 of file cv.hpp.

UNIMOD_Label_15N_2_2H_9_ = 100000944

Label:15N(2)2H(9): SILAC label.

Definition at line 10228 of file cv.hpp.

UNIMOD_LG_anhydrolactam = 100000946

LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.

Definition at line 10231 of file cv.hpp.

UNIMOD_LG_pyrrole = 100000947

LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.

Definition at line 10234 of file cv.hpp.

UNIMOD_LG_anhyropyrrole = 100000948

LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.

Definition at line 10237 of file cv.hpp.

UNIMOD_3_deoxyglucosone = 100000949

3-deoxyglucosone: Condensation product of 3-deoxyglucosone.

Definition at line 10240 of file cv.hpp.

UNIMOD_Cation_Li = 100000950

Cation:Li: Replacement of proton by lithium.

Definition at line 10243 of file cv.hpp.

UNIMOD_Cation_Ca_II_ = 100000951

Cation:Ca[II]: Replacement of 2 protons by calcium.

Definition at line 10246 of file cv.hpp.

UNIMOD_Cation_Fe_II_ = 100000952

Cation:Fe[II]: Replacement of 2 protons by iron.

Definition at line 10249 of file cv.hpp.

UNIMOD_Cation_Ni_II_ = 100000953

Cation:Ni[II]: Replacement of 2 protons by nickel.

Definition at line 10252 of file cv.hpp.

UNIMOD_Cation_Zn_II_ = 100000954

Cation:Zn[II]: Replacement of 2 protons by zinc.

Definition at line 10255 of file cv.hpp.

UNIMOD_Cation_Ag = 100000955

Cation:Ag: Replacement of proton by silver.

Definition at line 10258 of file cv.hpp.

UNIMOD_Cation_Mg_II_ = 100000956

Cation:Mg[II]: Replacement of 2 protons by magnesium.

Definition at line 10261 of file cv.hpp.

UNIMOD_2_succinyl = 100000957

2-succinyl: S-(2-succinyl) cysteine.

Definition at line 10264 of file cv.hpp.

UNIMOD_Propargylamine = 100000958

Propargylamine: Propargylamine.

Definition at line 10267 of file cv.hpp.

UNIMOD_Phosphopropargyl = 100000959

Phosphopropargyl: Phospho-propargylamine.

Definition at line 10270 of file cv.hpp.

UNIMOD_SUMO2135 = 100000960

SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.

Definition at line 10273 of file cv.hpp.

UNIMOD_SUMO3549 = 100000961

SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.

Definition at line 10276 of file cv.hpp.

UNIMOD_thioacylPA = 100000967

thioacylPA: Membrane protein extraction.

Definition at line 10279 of file cv.hpp.

UNIMOD_maleimide3 = 100000971

maleimide3: Maleimide-3-saccharide.

Definition at line 10282 of file cv.hpp.

UNIMOD_maleimide5 = 100000972

maleimide5: Maleimide-5-saccharide.

Definition at line 10285 of file cv.hpp.

UNIMOD_Puromycin = 100000973

Puromycin: Puromycin.

Definition at line 10288 of file cv.hpp.

UNIMOD_Chlorpyrifos = 100000975

Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.

Definition at line 10291 of file cv.hpp.

UNIMOD_Carbofuran = 100000977

Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.

Definition at line 10294 of file cv.hpp.

UNIMOD_BITC = 100000978

BITC: Benzyl isothiocyanate.

Definition at line 10297 of file cv.hpp.

UNIMOD_PEITC = 100000979

PEITC: Phenethyl isothiocyanate.

Definition at line 10300 of file cv.hpp.

UNIMOD_glucosone = 100000981

glucosone: Condensation product of glucosone.

Definition at line 10303 of file cv.hpp.

UNIMOD_cysTMT = 100000984

cysTMT: Native cysteine-reactive Tandem Mass Tag®.

Definition at line 10306 of file cv.hpp.

UNIMOD_cysTMT6plex = 100000985

cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.

Definition at line 10309 of file cv.hpp.

UNIMOD_Label_13C_6__Dimethyl = 100000986

Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.

Definition at line 10312 of file cv.hpp.

UNIMOD_Label_13C_6_15N_2__Dimethyl = 100000987

Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.

Definition at line 10315 of file cv.hpp.

UNIMOD_Ammonium = 100000989

Ammonium: Replacement of proton with ammonium ion.

Definition at line 10318 of file cv.hpp.

UNIMOD_ISD_z_2_ion = 100000991

ISD_z+2_ion: ISD (z+2)-series.

Definition at line 10321 of file cv.hpp.

UNIMOD_Biotin_Sigma_B1267 = 100000993

Biotin:Sigma-B1267: Was Biotin-maleimide.

Definition at line 10324 of file cv.hpp.

UNIMOD_Label_15N_1_ = 100000994

Label:15N(1): 15N(1).

Definition at line 10327 of file cv.hpp.

UNIMOD_Label_15N_2_ = 100000995

Label:15N(2): 15N(2).

Definition at line 10330 of file cv.hpp.

UNIMOD_Label_15N_3_ = 100000996

Label:15N(3): 15N(3).

Definition at line 10333 of file cv.hpp.

UNIMOD_sulfo_amino = 100000997

sulfo+amino: Aminotyrosine with sulfation.

Definition at line 10336 of file cv.hpp.

UNIMOD_AHA_Alkyne = 100001000

AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).

Definition at line 10339 of file cv.hpp.

UNIMOD_AHA_Alkyne_KDDDD = 100001001

AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).

Definition at line 10342 of file cv.hpp.

UNIMOD_EGCG1 = 100001002

EGCG1: (-)-epigallocatechin-3-gallate.

Definition at line 10345 of file cv.hpp.

UNIMOD_EGCG2 = 100001003

EGCG2: (-)-dehydroepigallocatechin.

Definition at line 10348 of file cv.hpp.

UNIMOD_Label_13C_6_15N_4__Methyl = 100001004

Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).

Definition at line 10351 of file cv.hpp.

UNIMOD_Label_13C_6_15N_4__Dimethyl = 100001005

Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).

Definition at line 10354 of file cv.hpp.

UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_ = 100001006

Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).

Definition at line 10357 of file cv.hpp.

UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_ = 100001007

Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).

Definition at line 10360 of file cv.hpp.

UNIMOD_Cys__CamSec = 100001008

Cys->CamSec: Sec Iodoacetamide derivative.

Definition at line 10363 of file cv.hpp.

UNIMOD_Thiazolidine = 100001009

Thiazolidine: Addition of Carbon to cysteine.

Definition at line 10366 of file cv.hpp.

UNIMOD_DEDGFLYMVYASQETFG = 100001010

DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.

Definition at line 10369 of file cv.hpp.

UNIMOD_Biotin_Invitrogen_M1602 = 100001012

Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.

Definition at line 10372 of file cv.hpp.

UNIMOD_glycidamide = 100001014

glycidamide: Glycidamide adduct.

Definition at line 10375 of file cv.hpp.

UNIMOD_Ahx2_Hsl = 100001015

Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.

Definition at line 10378 of file cv.hpp.

UNIMOD_DMPO = 100001017

DMPO: DMPO spin-trap nitrone adduct.

Definition at line 10381 of file cv.hpp.

UNIMOD_ICDID = 100001018

ICDID: Isotope-Coded Dimedone light form.

Definition at line 10384 of file cv.hpp.

UNIMOD_ICDID_2H_6_ = 100001019

ICDID:2H(6): Isotope-Coded Dimedone heavy form.

Definition at line 10387 of file cv.hpp.

UNIMOD_Xlink_DSS = 100001020

Xlink:DSS: Water-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.

Definition at line 10390 of file cv.hpp.

UNIMOD_Xlink_EGS = 100001021

Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.

Definition at line 10393 of file cv.hpp.

UNIMOD_Xlink_DST = 100001022

Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.

Definition at line 10396 of file cv.hpp.

UNIMOD_Xlink_DTSSP = 100001023

Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.

Definition at line 10399 of file cv.hpp.

UNIMOD_Xlink_SMCC = 100001024

Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.

Definition at line 10402 of file cv.hpp.

UNIMOD_Xlink_DMP_de = 100001027

Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.

Definition at line 10405 of file cv.hpp.

UNIMOD_Xlink_EGScleaved = 100001028

Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.

Definition at line 10408 of file cv.hpp.

UNIMOD_Biotin_Thermo_88310 = 100001031

Biotin:Thermo-88310: Desthiobiotin modification of lysine.

Definition at line 10411 of file cv.hpp.

UNIMOD_2_nitrobenzyl = 100001032

2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).

Definition at line 10414 of file cv.hpp.

UNIMOD_Cys__SecNEM = 100001033

Cys->SecNEM: N-ethylmaleimide on selenocysteines.

Definition at line 10417 of file cv.hpp.

UNIMOD_Cys__SecNEM_2H_5_ = 100001034

Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.

Definition at line 10420 of file cv.hpp.

UNIMOD_Thiadiazole = 100001035

Thiadiazole: Thiadiazolydation of Cys.

Definition at line 10423 of file cv.hpp.

UNIMOD_Withaferin = 100001036

Withaferin: Modification of cystein by withaferin.

Definition at line 10426 of file cv.hpp.

UNIMOD_Biotin_Thermo_88317 = 100001037

Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.

Definition at line 10429 of file cv.hpp.

UNIMOD_TAMRA_FP = 100001038

TAMRA-FP: TAMRA fluorophosphonate modification of serine.

Definition at line 10432 of file cv.hpp.

UNIMOD_Biotin_Thermo_21901_H2O = 100001039

Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.

Definition at line 10435 of file cv.hpp.

UNIMOD_Deoxyhypusine = 100001041

Deoxyhypusine: Deoxyhypusine.

Definition at line 10438 of file cv.hpp.

UNIMOD_Acetyldeoxyhypusine = 100001042

Acetyldeoxyhypusine: Acetyldeoxyhypusine.

Definition at line 10441 of file cv.hpp.

UNIMOD_Acetylhypusine = 100001043

Acetylhypusine: Acetylhypusine.

Definition at line 10444 of file cv.hpp.

UNIMOD_Ala__Cys = 100001044

Ala->Cys: Ala->Cys substitution.

Definition at line 10447 of file cv.hpp.

UNIMOD_Ala__Phe = 100001045

Ala->Phe: Ala->Phe substitution.

Definition at line 10450 of file cv.hpp.

UNIMOD_Ala__His = 100001046

Ala->His: Ala->His substitution.

Definition at line 10453 of file cv.hpp.

UNIMOD_Ala__Xle = 100001047

Ala->Xle: Ala->Leu/Ile substitution.

Definition at line 10456 of file cv.hpp.

UNIMOD_Ala__Lys = 100001048

Ala->Lys: Ala->Lys substitution.

Definition at line 10459 of file cv.hpp.

UNIMOD_Ala__Met = 100001049

Ala->Met: Ala->Met substitution.

Definition at line 10462 of file cv.hpp.

UNIMOD_Ala__Asn = 100001050

Ala->Asn: Ala->Asn substitution.

Definition at line 10465 of file cv.hpp.

UNIMOD_Ala__Gln = 100001051

Ala->Gln: Ala->Gln substitution.

Definition at line 10468 of file cv.hpp.

UNIMOD_Ala__Arg = 100001052

Ala->Arg: Ala->Arg substitution.

Definition at line 10471 of file cv.hpp.

UNIMOD_Ala__Trp = 100001053

Ala->Trp: Ala->Trp substitution.

Definition at line 10474 of file cv.hpp.

UNIMOD_Ala__Tyr = 100001054

Ala->Tyr: Ala->Tyr substitution.

Definition at line 10477 of file cv.hpp.

UNIMOD_Cys__Ala = 100001055

Cys->Ala: Cys->Ala substitution.

Definition at line 10480 of file cv.hpp.

UNIMOD_Cys__Asp = 100001056

Cys->Asp: Cys->Asp substitution.

Definition at line 10483 of file cv.hpp.

UNIMOD_Cys__Glu = 100001057

Cys->Glu: Cys->Glu substitution.

Definition at line 10486 of file cv.hpp.

UNIMOD_Cys__His = 100001058

Cys->His: Cys->His substitution.

Definition at line 10489 of file cv.hpp.

UNIMOD_Cys__Xle = 100001059

Cys->Xle: Cys->Leu/Ile substitution.

Definition at line 10492 of file cv.hpp.

UNIMOD_Cys__Lys = 100001060

Cys->Lys: Cys->Lys substitution.

Definition at line 10495 of file cv.hpp.

UNIMOD_Cys__Met = 100001061

Cys->Met: Cys->Met substitution.

Definition at line 10498 of file cv.hpp.

UNIMOD_Cys__Asn = 100001062

Cys->Asn: Cys->Asn substitution.

Definition at line 10501 of file cv.hpp.

UNIMOD_Cys__Pro = 100001063

Cys->Pro: Cys->Pro substitution.

Definition at line 10504 of file cv.hpp.

UNIMOD_Cys__Gln = 100001064

Cys->Gln: Cys->Gln substitution.

Definition at line 10507 of file cv.hpp.

UNIMOD_Cys__Thr = 100001065

Cys->Thr: Cys->Thr substitution.

Definition at line 10510 of file cv.hpp.

UNIMOD_Cys__Val = 100001066

Cys->Val: Cys->Val substitution.

Definition at line 10513 of file cv.hpp.

UNIMOD_Asp__Cys = 100001067

Asp->Cys: Asp->Cys substitution.

Definition at line 10516 of file cv.hpp.

UNIMOD_Asp__Phe = 100001068

Asp->Phe: Asp->Phe substitution.

Definition at line 10519 of file cv.hpp.

UNIMOD_Asp__Xle = 100001069

Asp->Xle: Asp->Leu/Ile substitution.

Definition at line 10522 of file cv.hpp.

UNIMOD_Asp__Lys = 100001070

Asp->Lys: Asp->Lys substitution.

Definition at line 10525 of file cv.hpp.

UNIMOD_Asp__Met = 100001071

Asp->Met: Asp->Met substitution.

Definition at line 10528 of file cv.hpp.

UNIMOD_Asp__Pro = 100001072

Asp->Pro: Asp->Pro substitution.

Definition at line 10531 of file cv.hpp.

UNIMOD_Asp__Gln = 100001073

Asp->Gln: Asp->Gln substitution.

Definition at line 10534 of file cv.hpp.

UNIMOD_Asp__Arg = 100001074

Asp->Arg: Asp->Arg substitution.

Definition at line 10537 of file cv.hpp.

UNIMOD_Asp__Ser = 100001075

Asp->Ser: Asp->Ser substitution.

Definition at line 10540 of file cv.hpp.

UNIMOD_Asp__Thr = 100001076

Asp->Thr: Asp->Thr substitution.

Definition at line 10543 of file cv.hpp.

UNIMOD_Asp__Trp = 100001077

Asp->Trp: Asp->Trp substitution.

Definition at line 10546 of file cv.hpp.

UNIMOD_Glu__Cys = 100001078

Glu->Cys: Glu->Cys substitution.

Definition at line 10549 of file cv.hpp.

UNIMOD_Glu__Phe = 100001079

Glu->Phe: Glu->Phe substitution.

Definition at line 10552 of file cv.hpp.

UNIMOD_Glu__His = 100001080

Glu->His: Glu->His substitution.

Definition at line 10555 of file cv.hpp.

UNIMOD_Glu__Xle = 100001081

Glu->Xle: Glu->Leu/Ile substitution.

Definition at line 10558 of file cv.hpp.

UNIMOD_Glu__Met = 100001082

Glu->Met: Glu->Met substitution.

Definition at line 10561 of file cv.hpp.

UNIMOD_Glu__Asn = 100001083

Glu->Asn: Glu->Asn substitution.

Definition at line 10564 of file cv.hpp.

UNIMOD_Glu__Pro = 100001084

Glu->Pro: Glu->Pro substitution.

Definition at line 10567 of file cv.hpp.

UNIMOD_Glu__Arg = 100001085

Glu->Arg: Glu->Arg substitution.

Definition at line 10570 of file cv.hpp.

UNIMOD_Glu__Ser = 100001086

Glu->Ser: Glu->Ser substitution.

Definition at line 10573 of file cv.hpp.

UNIMOD_Glu__Thr = 100001087

Glu->Thr: Glu->Thr substitution.

Definition at line 10576 of file cv.hpp.

UNIMOD_Glu__Trp = 100001088

Glu->Trp: Glu->Trp substitution.

Definition at line 10579 of file cv.hpp.

UNIMOD_Glu__Tyr = 100001089

Glu->Tyr: Glu->Tyr substitution.

Definition at line 10582 of file cv.hpp.

UNIMOD_Phe__Ala = 100001090

Phe->Ala: Phe->Ala substitution.

Definition at line 10585 of file cv.hpp.

UNIMOD_Phe__Asp = 100001091

Phe->Asp: Phe->Asp substitution.

Definition at line 10588 of file cv.hpp.

UNIMOD_Phe__Glu = 100001092

Phe->Glu: Phe->Glu substitution.

Definition at line 10591 of file cv.hpp.

UNIMOD_Phe__Gly = 100001093

Phe->Gly: Phe->Gly substitution.

Definition at line 10594 of file cv.hpp.

UNIMOD_Phe__His = 100001094

Phe->His: Phe->His substitution.

Definition at line 10597 of file cv.hpp.

UNIMOD_Phe__Lys = 100001095

Phe->Lys: Phe->Lys substitution.

Definition at line 10600 of file cv.hpp.

UNIMOD_Phe__Met = 100001096

Phe->Met: Phe->Met substitution.

Definition at line 10603 of file cv.hpp.

UNIMOD_Phe__Asn = 100001097

Phe->Asn: Phe->Asn substitution.

Definition at line 10606 of file cv.hpp.

UNIMOD_Phe__Pro = 100001098

Phe->Pro: Phe->Pro substitution.

Definition at line 10609 of file cv.hpp.

UNIMOD_Phe__Gln = 100001099

Phe->Gln: Phe->Gln substitution.

Definition at line 10612 of file cv.hpp.

UNIMOD_Phe__Arg = 100001100

Phe->Arg: Phe->Arg substitution.

Definition at line 10615 of file cv.hpp.

UNIMOD_Phe__Thr = 100001101

Phe->Thr: Phe->Thr substitution.

Definition at line 10618 of file cv.hpp.

UNIMOD_Phe__Trp = 100001102

Phe->Trp: Phe->Trp substitution.

Definition at line 10621 of file cv.hpp.

UNIMOD_Gly__Phe = 100001103

Gly->Phe: Gly->Phe substitution.

Definition at line 10624 of file cv.hpp.

UNIMOD_Gly__His = 100001104

Gly->His: Gly->His substitution.

Definition at line 10627 of file cv.hpp.

UNIMOD_Gly__Xle = 100001105

Gly->Xle: Gly->Leu/Ile substitution.

Definition at line 10630 of file cv.hpp.

UNIMOD_Gly__Lys = 100001106

Gly->Lys: Gly->Lys substitution.

Definition at line 10633 of file cv.hpp.

UNIMOD_Gly__Met = 100001107

Gly->Met: Gly->Met substitution.

Definition at line 10636 of file cv.hpp.

UNIMOD_Gly__Asn = 100001108

Gly->Asn: Gly->Asn substitution.

Definition at line 10639 of file cv.hpp.

UNIMOD_Gly__Pro = 100001109

Gly->Pro: Gly->Pro substitution.

Definition at line 10642 of file cv.hpp.

UNIMOD_Gly__Gln = 100001110

Gly->Gln: Gly->Gln substitution.

Definition at line 10645 of file cv.hpp.

UNIMOD_Gly__Thr = 100001111

Gly->Thr: Gly->Thr substitution.

Definition at line 10648 of file cv.hpp.

UNIMOD_Gly__Tyr = 100001112

Gly->Tyr: Gly->Tyr substitution.

Definition at line 10651 of file cv.hpp.

UNIMOD_His__Ala = 100001113

His->Ala: His->Ala substitution.

Definition at line 10654 of file cv.hpp.

UNIMOD_His__Cys = 100001114

His->Cys: His->Cys substitution.

Definition at line 10657 of file cv.hpp.

UNIMOD_His__Glu = 100001115

His->Glu: His->Glu substitution.

Definition at line 10660 of file cv.hpp.

UNIMOD_His__Phe = 100001116

His->Phe: His->Phe substitution.

Definition at line 10663 of file cv.hpp.

UNIMOD_His__Gly = 100001117

His->Gly: His->Gly substitution.

Definition at line 10666 of file cv.hpp.

UNIMOD_His__Lys = 100001119

His->Lys: His->Lys substitution.

Definition at line 10669 of file cv.hpp.

UNIMOD_His__Met = 100001120

His->Met: His->Met substitution.

Definition at line 10672 of file cv.hpp.

UNIMOD_His__Ser = 100001121

His->Ser: His->Ser substitution.

Definition at line 10675 of file cv.hpp.

UNIMOD_His__Thr = 100001122

His->Thr: His->Thr substitution.

Definition at line 10678 of file cv.hpp.

UNIMOD_His__Val = 100001123

His->Val: His->Val substitution.

Definition at line 10681 of file cv.hpp.

UNIMOD_His__Trp = 100001124

His->Trp: His->Trp substitution.

Definition at line 10684 of file cv.hpp.

UNIMOD_Xle__Ala = 100001125

Xle->Ala: Leu/Ile->Ala substitution.

Definition at line 10687 of file cv.hpp.

UNIMOD_Xle__Cys = 100001126

Xle->Cys: Leu/Ile->Cys substitution.

Definition at line 10690 of file cv.hpp.

UNIMOD_Xle__Asp = 100001127

Xle->Asp: Leu/Ile->Asp substitution.

Definition at line 10693 of file cv.hpp.

UNIMOD_Xle__Glu = 100001128

Xle->Glu: Leu/Ile->Glu substitution.

Definition at line 10696 of file cv.hpp.

UNIMOD_Xle__Gly = 100001129

Xle->Gly: Leu/Ile->Gly substitution.

Definition at line 10699 of file cv.hpp.

UNIMOD_Xle__Tyr = 100001130

Xle->Tyr: Leu/Ile->Tyr substitution.

Definition at line 10702 of file cv.hpp.

UNIMOD_Lys__Ala = 100001131

Lys->Ala: Lys->Ala substitution.

Definition at line 10705 of file cv.hpp.

UNIMOD_Lys__Cys = 100001132

Lys->Cys: Lys->Cys substitution.

Definition at line 10708 of file cv.hpp.

UNIMOD_Lys__Asp = 100001133

Lys->Asp: Lys->Asp substitution.

Definition at line 10711 of file cv.hpp.

UNIMOD_Lys__Phe = 100001134

Lys->Phe: Lys->Phe substitution.

Definition at line 10714 of file cv.hpp.

UNIMOD_Lys__Gly = 100001135

Lys->Gly: Lys->Gly substitution.

Definition at line 10717 of file cv.hpp.

UNIMOD_Lys__His = 100001136

Lys->His: Lys->His substitution.

Definition at line 10720 of file cv.hpp.

UNIMOD_Lys__Pro = 100001137

Lys->Pro: Lys->Pro substitution.

Definition at line 10723 of file cv.hpp.

UNIMOD_Lys__Ser = 100001138

Lys->Ser: Lys->Ser substitution.

Definition at line 10726 of file cv.hpp.

UNIMOD_Lys__Val = 100001139

Lys->Val: Lys->Val substitution.

Definition at line 10729 of file cv.hpp.

UNIMOD_Lys__Trp = 100001140

Lys->Trp: Lys->Trp substitution.

Definition at line 10732 of file cv.hpp.

UNIMOD_Lys__Tyr = 100001141

Lys->Tyr: Lys->Tyr substitution.

Definition at line 10735 of file cv.hpp.

UNIMOD_Met__Ala = 100001142

Met->Ala: Met->Ala substitution.

Definition at line 10738 of file cv.hpp.

UNIMOD_Met__Cys = 100001143

Met->Cys: Met->Cys substitution.

Definition at line 10741 of file cv.hpp.

UNIMOD_Met__Asp = 100001144

Met->Asp: Met->Asp substitution.

Definition at line 10744 of file cv.hpp.

UNIMOD_Met__Glu = 100001145

Met->Glu: Met->Glu substitution.

Definition at line 10747 of file cv.hpp.

UNIMOD_Met__Phe = 100001146

Met->Phe: Met->Phe substitution.

Definition at line 10750 of file cv.hpp.

UNIMOD_Met__Gly = 100001147

Met->Gly: Met->Gly substitution.

Definition at line 10753 of file cv.hpp.

UNIMOD_Met__His = 100001148

Met->His: Met->His substitution.

Definition at line 10756 of file cv.hpp.

UNIMOD_Met__Asn = 100001149

Met->Asn: Met->Asn substitution.

Definition at line 10759 of file cv.hpp.

UNIMOD_Met__Pro = 100001150

Met->Pro: Met->Pro substitution.

Definition at line 10762 of file cv.hpp.

UNIMOD_Met__Gln = 100001151

Met->Gln: Met->Gln substitution.

Definition at line 10765 of file cv.hpp.

UNIMOD_Met__Ser = 100001152

Met->Ser: Met->Ser substitution.

Definition at line 10768 of file cv.hpp.

UNIMOD_Met__Trp = 100001153

Met->Trp: Met->Trp substitution.

Definition at line 10771 of file cv.hpp.

UNIMOD_Met__Tyr = 100001154

Met->Tyr: Met->Tyr substitution.

Definition at line 10774 of file cv.hpp.

UNIMOD_Asn__Ala = 100001155

Asn->Ala: Asn->Ala substitution.

Definition at line 10777 of file cv.hpp.

UNIMOD_Asn__Cys = 100001156

Asn->Cys: Asn->Cys substitution.

Definition at line 10780 of file cv.hpp.

UNIMOD_Asn__Glu = 100001157

Asn->Glu: Asn->Glu substitution.

Definition at line 10783 of file cv.hpp.

UNIMOD_Asn__Phe = 100001158

Asn->Phe: Asn->Phe substitution.

Definition at line 10786 of file cv.hpp.

UNIMOD_Asn__Gly = 100001159

Asn->Gly: Asn->Gly substitution.

Definition at line 10789 of file cv.hpp.

UNIMOD_Asn__Met = 100001160

Asn->Met: Asn->Met substitution.

Definition at line 10792 of file cv.hpp.

UNIMOD_Asn__Pro = 100001161

Asn->Pro: Asn->Pro substitution.

Definition at line 10795 of file cv.hpp.

UNIMOD_Asn__Gln = 100001162

Asn->Gln: Asn->Gln substitution.

Definition at line 10798 of file cv.hpp.

UNIMOD_Asn__Arg = 100001163

Asn->Arg: Asn->Arg substitution.

Definition at line 10801 of file cv.hpp.

UNIMOD_Asn__Val = 100001164

Asn->Val: Asn->Val substitution.

Definition at line 10804 of file cv.hpp.

UNIMOD_Asn__Trp = 100001165

Asn->Trp: Asn->Trp substitution.

Definition at line 10807 of file cv.hpp.

UNIMOD_Pro__Cys = 100001166

Pro->Cys: Pro->Cys substitution.

Definition at line 10810 of file cv.hpp.

UNIMOD_Pro__Asp = 100001167

Pro->Asp: Pro->Asp substitution.

Definition at line 10813 of file cv.hpp.

UNIMOD_Pro__Glu = 100001168

Pro->Glu: Pro->Glu substitution.

Definition at line 10816 of file cv.hpp.

UNIMOD_Pro__Phe = 100001169

Pro->Phe: Pro->Phe substitution.

Definition at line 10819 of file cv.hpp.

UNIMOD_Pro__Gly = 100001170

Pro->Gly: Pro->Gly substitution.

Definition at line 10822 of file cv.hpp.

UNIMOD_Pro__Lys = 100001171

Pro->Lys: Pro->Lys substitution.

Definition at line 10825 of file cv.hpp.

UNIMOD_Pro__Met = 100001172

Pro->Met: Pro->Met substitution.

Definition at line 10828 of file cv.hpp.

UNIMOD_Pro__Asn = 100001173

Pro->Asn: Pro->Asn substitution.

Definition at line 10831 of file cv.hpp.

UNIMOD_Pro__Val = 100001174

Pro->Val: Pro->Val substitution.

Definition at line 10834 of file cv.hpp.

UNIMOD_Pro__Trp = 100001175

Pro->Trp: Pro->Trp substitution.

Definition at line 10837 of file cv.hpp.

UNIMOD_Pro__Tyr = 100001176

Pro->Tyr: Pro->Tyr substitution.

Definition at line 10840 of file cv.hpp.

UNIMOD_Gln__Ala = 100001177

Gln->Ala: Gln->Ala substitution.

Definition at line 10843 of file cv.hpp.

UNIMOD_Gln__Cys = 100001178

Gln->Cys: Gln->Cys substitution.

Definition at line 10846 of file cv.hpp.

UNIMOD_Gln__Asp = 100001179

Gln->Asp: Gln->Asp substitution.

Definition at line 10849 of file cv.hpp.

UNIMOD_Gln__Phe = 100001180

Gln->Phe: Gln->Phe substitution.

Definition at line 10852 of file cv.hpp.

UNIMOD_Gln__Gly = 100001181

Gln->Gly: Gln->Gly substitution.

Definition at line 10855 of file cv.hpp.

UNIMOD_Gln__Met = 100001182

Gln->Met: Gln->Met substitution.

Definition at line 10858 of file cv.hpp.

UNIMOD_Gln__Asn = 100001183

Gln->Asn: Gln->Asn substitution.

Definition at line 10861 of file cv.hpp.

UNIMOD_Gln__Ser = 100001184

Gln->Ser: Gln->Ser substitution.

Definition at line 10864 of file cv.hpp.

UNIMOD_Gln__Thr = 100001185

Gln->Thr: Gln->Thr substitution.

Definition at line 10867 of file cv.hpp.

UNIMOD_Gln__Val = 100001186

Gln->Val: Gln->Val substitution.

Definition at line 10870 of file cv.hpp.

UNIMOD_Gln__Trp = 100001187

Gln->Trp: Gln->Trp substitution.

Definition at line 10873 of file cv.hpp.

UNIMOD_Gln__Tyr = 100001188

Gln->Tyr: Gln->Tyr substitution.

Definition at line 10876 of file cv.hpp.

UNIMOD_Arg__Ala = 100001189

Arg->Ala: Arg->Ala substitution.

Definition at line 10879 of file cv.hpp.

UNIMOD_Arg__Asp = 100001190

Arg->Asp: Arg->Asp substitution.

Definition at line 10882 of file cv.hpp.

UNIMOD_Arg__Glu = 100001191

Arg->Glu: Arg->Glu substitution.

Definition at line 10885 of file cv.hpp.

UNIMOD_Arg__Asn = 100001192

Arg->Asn: Arg->Asn substitution.

Definition at line 10888 of file cv.hpp.

UNIMOD_Arg__Val = 100001193

Arg->Val: Arg->Val substitution.

Definition at line 10891 of file cv.hpp.

UNIMOD_Arg__Tyr = 100001194

Arg->Tyr: Arg->Tyr substitution.

Definition at line 10894 of file cv.hpp.

UNIMOD_Arg__Phe = 100001195

Arg->Phe: Arg->Phe substitution.

Definition at line 10897 of file cv.hpp.

UNIMOD_Ser__Asp = 100001196

Ser->Asp: Ser->Asp substitution.

Definition at line 10900 of file cv.hpp.

UNIMOD_Ser__Glu = 100001197

Ser->Glu: Ser->Glu substitution.

Definition at line 10903 of file cv.hpp.

UNIMOD_Ser__His = 100001198

Ser->His: Ser->His substitution.

Definition at line 10906 of file cv.hpp.

UNIMOD_Ser__Lys = 100001199

Ser->Lys: Ser->Lys substitution.

Definition at line 10909 of file cv.hpp.

UNIMOD_Ser__Met = 100001200

Ser->Met: Ser->Met substitution.

Definition at line 10912 of file cv.hpp.

UNIMOD_Ser__Gln = 100001201

Ser->Gln: Ser->Gln substitution.

Definition at line 10915 of file cv.hpp.

UNIMOD_Ser__Val = 100001202

Ser->Val: Ser->Val substitution.

Definition at line 10918 of file cv.hpp.

UNIMOD_Thr__Cys = 100001203

Thr->Cys: Thr->Cys substitution.

Definition at line 10921 of file cv.hpp.

UNIMOD_Thr__Asp = 100001204

Thr->Asp: Thr->Asp substitution.

Definition at line 10924 of file cv.hpp.

UNIMOD_Thr__Glu = 100001205

Thr->Glu: Thr->Glu substitution.

Definition at line 10927 of file cv.hpp.

UNIMOD_Thr__Phe = 100001206

Thr->Phe: Thr->Phe substitution.

Definition at line 10930 of file cv.hpp.

UNIMOD_Thr__Gly = 100001207

Thr->Gly: Thr->Gly substitution.

Definition at line 10933 of file cv.hpp.

UNIMOD_Thr__His = 100001208

Thr->His: Thr->His substitution.

Definition at line 10936 of file cv.hpp.

UNIMOD_Thr__Gln = 100001209

Thr->Gln: Thr->Gln substitution.

Definition at line 10939 of file cv.hpp.

UNIMOD_Thr__Val = 100001210

Thr->Val: Thr->Val substitution.

Definition at line 10942 of file cv.hpp.

UNIMOD_Thr__Trp = 100001211

Thr->Trp: Thr->Trp substitution.

Definition at line 10945 of file cv.hpp.

UNIMOD_Thr__Tyr = 100001212

Thr->Tyr: Thr->Tyr substitution.

Definition at line 10948 of file cv.hpp.

UNIMOD_Val__Cys = 100001213

Val->Cys: Val->Cys substitution.

Definition at line 10951 of file cv.hpp.

UNIMOD_Val__His = 100001214

Val->His: Val->His substitution.

Definition at line 10954 of file cv.hpp.

UNIMOD_Val__Lys = 100001215

Val->Lys: Val->Lys substitution.

Definition at line 10957 of file cv.hpp.

UNIMOD_Val__Asn = 100001216

Val->Asn: Val->Asn substitution.

Definition at line 10960 of file cv.hpp.

UNIMOD_Val__Pro = 100001217

Val->Pro: Val->Pro substitution.

Definition at line 10963 of file cv.hpp.

UNIMOD_Val__Gln = 100001218

Val->Gln: Val->Gln substitution.

Definition at line 10966 of file cv.hpp.

UNIMOD_Val__Arg = 100001219

Val->Arg: Val->Arg substitution.

Definition at line 10969 of file cv.hpp.

UNIMOD_Val__Ser = 100001220

Val->Ser: Val->Ser substitution.

Definition at line 10972 of file cv.hpp.

UNIMOD_Val__Thr = 100001221

Val->Thr: Val->Thr substitution.

Definition at line 10975 of file cv.hpp.

UNIMOD_Val__Trp = 100001222

Val->Trp: Val->Trp substitution.

Definition at line 10978 of file cv.hpp.

UNIMOD_Val__Tyr = 100001223

Val->Tyr: Val->Tyr substitution.

Definition at line 10981 of file cv.hpp.

UNIMOD_Trp__Ala = 100001224

Trp->Ala: Trp->Ala substitution.

Definition at line 10984 of file cv.hpp.

UNIMOD_Trp__Asp = 100001225

Trp->Asp: Trp->Asp substitution.

Definition at line 10987 of file cv.hpp.

UNIMOD_Trp__Glu = 100001226

Trp->Glu: Trp->Glu substitution.

Definition at line 10990 of file cv.hpp.

UNIMOD_Trp__Phe = 100001227

Trp->Phe: Trp->Phe substitution.

Definition at line 10993 of file cv.hpp.

UNIMOD_Trp__His = 100001228

Trp->His: Trp->His substitution.

Definition at line 10996 of file cv.hpp.

UNIMOD_Trp__Lys = 100001229

Trp->Lys: Trp->Lys substitution.

Definition at line 10999 of file cv.hpp.

UNIMOD_Trp__Met = 100001230

Trp->Met: Trp->Met substitution.

Definition at line 11002 of file cv.hpp.

UNIMOD_Trp__Asn = 100001231

Trp->Asn: Trp->Asn substitution.

Definition at line 11005 of file cv.hpp.

UNIMOD_Trp__Pro = 100001232

Trp->Pro: Trp->Pro substitution.

Definition at line 11008 of file cv.hpp.

UNIMOD_Trp__Gln = 100001233

Trp->Gln: Trp->Gln substitution.

Definition at line 11011 of file cv.hpp.

UNIMOD_Trp__Thr = 100001234

Trp->Thr: Trp->Thr substitution.

Definition at line 11014 of file cv.hpp.

UNIMOD_Trp__Val = 100001235

Trp->Val: Trp->Val substitution.

Definition at line 11017 of file cv.hpp.

UNIMOD_Trp__Tyr = 100001236

Trp->Tyr: Trp->Tyr substitution.

Definition at line 11020 of file cv.hpp.

UNIMOD_Tyr__Ala = 100001237

Tyr->Ala: Tyr->Ala substitution.

Definition at line 11023 of file cv.hpp.

UNIMOD_Tyr__Glu = 100001238

Tyr->Glu: Tyr->Glu substitution.

Definition at line 11026 of file cv.hpp.

UNIMOD_Tyr__Gly = 100001239

Tyr->Gly: Tyr->Gly substitution.

Definition at line 11029 of file cv.hpp.

UNIMOD_Tyr__Lys = 100001240

Tyr->Lys: Tyr->Lys substitution.

Definition at line 11032 of file cv.hpp.

UNIMOD_Tyr__Met = 100001241

Tyr->Met: Tyr->Met substitution.

Definition at line 11035 of file cv.hpp.

UNIMOD_Tyr__Pro = 100001242

Tyr->Pro: Tyr->Pro substitution.

Definition at line 11038 of file cv.hpp.

UNIMOD_Tyr__Gln = 100001243

Tyr->Gln: Tyr->Gln substitution.

Definition at line 11041 of file cv.hpp.

UNIMOD_Tyr__Arg = 100001244

Tyr->Arg: Tyr->Arg substitution.

Definition at line 11044 of file cv.hpp.

UNIMOD_Tyr__Thr = 100001245

Tyr->Thr: Tyr->Thr substitution.

Definition at line 11047 of file cv.hpp.

UNIMOD_Tyr__Val = 100001246

Tyr->Val: Tyr->Val substitution.

Definition at line 11050 of file cv.hpp.

UNIMOD_Tyr__Trp = 100001247

Tyr->Trp: Tyr->Trp substitution.

Definition at line 11053 of file cv.hpp.

UNIMOD_Tyr__Xle = 100001248

Tyr->Xle: Tyr->Leu/Ile substitution.

Definition at line 11056 of file cv.hpp.

UNIMOD_AHA_SS = 100001249

AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.

Definition at line 11059 of file cv.hpp.

UNIMOD_AHA_SS_CAM = 100001250

AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.

Definition at line 11062 of file cv.hpp.

UNIMOD_Biotin_Thermo_33033 = 100001251

Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.

Definition at line 11065 of file cv.hpp.

UNIMOD_Biotin_Thermo_33033_H = 100001252

Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.

Definition at line 11068 of file cv.hpp.

UNIMOD_2_monomethylsuccinyl = 100001253

2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.

Definition at line 11071 of file cv.hpp.

UNIMOD_Saligenin = 100001254

Saligenin: O-toluene.

Definition at line 11074 of file cv.hpp.

UNIMOD_Cresylphosphate = 100001255

Cresylphosphate: O-toluyl-phosphorylation.

Definition at line 11077 of file cv.hpp.

UNIMOD_CresylSaligeninPhosphate = 100001256

CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.

Definition at line 11080 of file cv.hpp.

UNIMOD_Ub_Br2 = 100001257

Ub-Br2: Ub Bromide probe addition.

Definition at line 11083 of file cv.hpp.

UNIMOD_Ub_VME = 100001258

Ub-VME: Ubiquitin vinylmethylester.

Definition at line 11086 of file cv.hpp.

UNIMOD_Ub_amide = 100001260

Ub-amide: Ub amide probe addition.

Definition at line 11089 of file cv.hpp.

UNIMOD_Ub_fluorescein = 100001261

Ub-fluorescein: Ub Fluorescein probe addition.

Definition at line 11092 of file cv.hpp.

UNIMOD_2_dimethylsuccinyl = 100001262

2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.

Definition at line 11095 of file cv.hpp.

UNIMOD_Gly = 100001263

Gly: Addition of Glycine.

Definition at line 11098 of file cv.hpp.

UNIMOD_pupylation = 100001264

pupylation: Addition of GGE.

Definition at line 11101 of file cv.hpp.

UNIMOD_Label_13C_4_ = 100001266

Label:13C(4): 13C4 Methionine label.

Definition at line 11104 of file cv.hpp.

UNIMOD_Label_13C_4__Oxidation = 100001267

Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.

Definition at line 11107 of file cv.hpp.

UNIMOD_HCysThiolactone = 100001270

HCysThiolactone: N-Homocysteine thiolactone.

Definition at line 11110 of file cv.hpp.

UNIMOD_HCysteinyl = 100001271

HCysteinyl: S-homocysteinylation.

Definition at line 11113 of file cv.hpp.

UNIMOD_UgiJoullie = 100001276

UgiJoullie: Side reaction of HisTag.

Definition at line 11116 of file cv.hpp.

UNIMOD_Dipyridyl = 100001277

Dipyridyl: Cys modified with dipy ligand.

Definition at line 11119 of file cv.hpp.

UNIMOD_Furan = 100001278

Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.

Definition at line 11122 of file cv.hpp.

UNIMOD_Difuran = 100001279

Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.

Definition at line 11125 of file cv.hpp.

UNIMOD_BMP_piperidinol = 100001281

BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.

Definition at line 11128 of file cv.hpp.

UNIMOD_UgiJoullieProGly = 100001282

UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.

Definition at line 11131 of file cv.hpp.

UNIMOD_UgiJoullieProGlyProGly = 100001283

UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.

Definition at line 11134 of file cv.hpp.

UNIMOD_IMEHex_2_NeuAc_1_ = 100001286

IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.

Definition at line 11137 of file cv.hpp.

UNIMOD_Arg_loss = 100001287

Arg-loss: Loss of arginine due to transpeptidation.

Definition at line 11140 of file cv.hpp.

UNIMOD_Arg = 100001288

Arg: Addition of arginine due to transpeptidation.

Definition at line 11143 of file cv.hpp.

UNIMOD_Butyryl = 100001289

Butyryl: Butyryl.

Definition at line 11146 of file cv.hpp.

UNIMOD_Dicarbamidomethyl = 100001290

Dicarbamidomethyl: Double Carbamidomethylation.

Definition at line 11149 of file cv.hpp.

UNIMOD_Dimethyl_2H_6_ = 100001291

Dimethyl:2H(6): Dimethyl-Medium.

Definition at line 11152 of file cv.hpp.

UNIMOD_GGQ = 100001292

GGQ: SUMOylation leaving GlyGlyGln.

Definition at line 11155 of file cv.hpp.

UNIMOD_QTGG = 100001293

QTGG: SUMOylation leaving GlnThrGlyGly.

Definition at line 11158 of file cv.hpp.

UNIMOD_Label_13C_3_ = 100001296

Label:13C(3): 13C3 label for SILAC.

Definition at line 11161 of file cv.hpp.

UNIMOD_Label_13C_3_15N_1_ = 100001297

Label:13C(3)15N(1): 13C3 15N1 label for SILAC.

Definition at line 11164 of file cv.hpp.

UNIMOD_Label_13C_4_15N_1_ = 100001298

Label:13C(4)15N(1): 13C4 15N1 label for SILAC.

Definition at line 11167 of file cv.hpp.

UNIMOD_Label_2H_10_ = 100001299

Label:2H(10): 2H(10) label.

Definition at line 11170 of file cv.hpp.

UNIMOD_Label_2H_4_13C_1_ = 100001300

Label:2H(4)13C(1): Label:2H(4)13C(1).

Definition at line 11173 of file cv.hpp.

UNIMOD_Lys = 100001301

Lys: Addition of lysine due to transpeptidation.

Definition at line 11176 of file cv.hpp.

UNIMOD_mTRAQ_13C_6_15N_2_ = 100001302

mTRAQ:13C(6)15N(2): MTRAQ heavy.

Definition at line 11179 of file cv.hpp.

UNIMOD_NeuAc = 100001303

NeuAc: N-acetyl neuraminic acid.

Definition at line 11182 of file cv.hpp.

UNIMOD_NeuGc = 100001304

NeuGc: N-glycoyl neuraminic acid.

Definition at line 11185 of file cv.hpp.

UNIMOD_Propyl = 100001305

Propyl: Propyl.

Definition at line 11188 of file cv.hpp.

UNIMOD_Propyl_2H_6_ = 100001306

Propyl:2H(6): Propyl:2H(6).

Definition at line 11191 of file cv.hpp.

UNIMOD_Propiophenone = 100001310

Propiophenone: Propiophenone.

Definition at line 11194 of file cv.hpp.

UNIMOD_Delta_H_6_C_3_O_1_ = 100001312

Delta:H(6)C(3)O(1): Reduced acrolein addition +58.

Definition at line 11197 of file cv.hpp.

UNIMOD_Delta_H_8_C_6_O_1_ = 100001313

Delta:H(8)C(6)O(1): Reduced acrolein addition +96.

Definition at line 11200 of file cv.hpp.

UNIMOD_biotinAcrolein298 = 100001314

biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.

Definition at line 11203 of file cv.hpp.

UNIMOD_MM_diphenylpentanone = 100001315

MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.

Definition at line 11206 of file cv.hpp.

UNIMOD_EHD_diphenylpentanone = 100001317

EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.

Definition at line 11209 of file cv.hpp.

UNIMOD_Biotin_Thermo_21901_2H2O = 100001320

Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.

Definition at line 11212 of file cv.hpp.

UNIMOD_DiLeu4plex115 = 100001321

DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.

Definition at line 11215 of file cv.hpp.

UNIMOD_DiLeu4plex = 100001322

DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.

Definition at line 11218 of file cv.hpp.

UNIMOD_DiLeu4plex117 = 100001323

DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.

Definition at line 11221 of file cv.hpp.

UNIMOD_DiLeu4plex118 = 100001324

DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.

Definition at line 11224 of file cv.hpp.

UNIMOD_NEMsulfur = 100001326

NEMsulfur: N-ethylmaleimideSulfur.

Definition at line 11227 of file cv.hpp.

UNIMOD_SulfurDioxide = 100001327

SulfurDioxide: SulfurDioxide.

Definition at line 11230 of file cv.hpp.

UNIMOD_NEMsulfurWater = 100001328

NEMsulfurWater: N-ethylmaleimideSulfurWater.

Definition at line 11233 of file cv.hpp.

UNIMOD_bisANS_sulfonates = 100001330

bisANS-sulfonates: BisANS with loss of both sulfonates.

Definition at line 11236 of file cv.hpp.

UNIMOD_DNCB_hapten = 100001331

DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).

Definition at line 11239 of file cv.hpp.

UNIMOD_Biotin_Thermo_21911 = 100001340

Biotin:Thermo-21911: Biotin-PEG11-maleimide.

Definition at line 11242 of file cv.hpp.

UNIMOD_iodoTMT = 100001341

iodoTMT: Native iodoacetyl Tandem Mass Tag®.

Definition at line 11245 of file cv.hpp.

UNIMOD_iodoTMT6plex = 100001342

iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.

Definition at line 11248 of file cv.hpp.

UNIMOD_Phosphogluconoylation = 100001344

Phosphogluconoylation: Phosphogluconoylation.

Definition at line 11251 of file cv.hpp.

UNIMOD_PS_Hapten = 100001345

PS_Hapten: Reaction with phenyl salicylate (PS).

Definition at line 11254 of file cv.hpp.

UNIMOD_Cy3_maleimide = 100001348

Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.

Definition at line 11257 of file cv.hpp.

UNIMOD_benzylguanidine = 100001349

benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group.

Definition at line 11260 of file cv.hpp.

UNIMOD_CarboxymethylDMAP = 100001350

CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.

Definition at line 11263 of file cv.hpp.

UNIMOD_azole = 100001355

azole: Formation of five membered aromatic heterocycle.

Definition at line 11266 of file cv.hpp.

UNIMOD_phosphoRibosyl = 100001356

phosphoRibosyl: Phosphate-ribosylation.

Definition at line 11269 of file cv.hpp.

UNIMOD_NEM_2H_5__H2O = 100001358

NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.

Definition at line 11272 of file cv.hpp.

UNIMOD_Crotonyl = 100001363

Crotonyl: Crotonylation.

Definition at line 11275 of file cv.hpp.

UNIMOD_O_Et_N_diMePhospho = 100001364

O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.

Definition at line 11278 of file cv.hpp.

UNIMOD_N_dimethylphosphate = 100001365

N-dimethylphosphate: N-dimethylphosphate.

Definition at line 11281 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_ = 100001367

dHex(1)Hex(1): Hex1dHex1.

Definition at line 11284 of file cv.hpp.

UNIMOD_Methyl_2H_3__Acetyl_2H_3_ = 100001368

Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.

Definition at line 11287 of file cv.hpp.

UNIMOD_Label_2H_3__Oxidation = 100001370

Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.

Definition at line 11290 of file cv.hpp.

UNIMOD_Trimethyl_2H_9_ = 100001371

Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.

Definition at line 11293 of file cv.hpp.

UNIMOD_Acetyl_13C_2_ = 100001372

Acetyl:13C(2): Heavy acetylation.

Definition at line 11296 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_ = 100001375

dHex(1)Hex(2): Hex2dHex1.

Definition at line 11299 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_ = 100001376

dHex(1)Hex(3): Hex3dHex1.

Definition at line 11302 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_ = 100001377

dHex(1)Hex(4): Hex4dHex1.

Definition at line 11305 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_ = 100001378

dHex(1)Hex(5): Hex5dHex1.

Definition at line 11308 of file cv.hpp.

UNIMOD_dHex_1_Hex_6_ = 100001379

dHex(1)Hex(6): Hex6dHex1.

Definition at line 11311 of file cv.hpp.

UNIMOD_methylsulfonylethyl = 100001380

methylsulfonylethyl: Reaction with methyl vinyl sulfone.

Definition at line 11314 of file cv.hpp.

UNIMOD_ethylsulfonylethyl = 100001381

ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.

Definition at line 11317 of file cv.hpp.

UNIMOD_phenylsulfonylethyl = 100001382

phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.

Definition at line 11320 of file cv.hpp.

UNIMOD_PyridoxalPhosphateH2 = 100001383

PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage.

Definition at line 11323 of file cv.hpp.

UNIMOD_Homocysteic_acid = 100001384

Homocysteic_acid: Methionine oxidation to homocysteic acid.

Definition at line 11326 of file cv.hpp.

UNIMOD_Hydroxamic_acid = 100001385

Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.

Definition at line 11329 of file cv.hpp.

UNIMOD_3_phosphoglyceryl = 100001387

3-phosphoglyceryl: 3-phosphoglyceryl.

Definition at line 11332 of file cv.hpp.

UNIMOD_HN2_mustard = 100001388

HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).

Definition at line 11335 of file cv.hpp.

UNIMOD_HN3_mustard = 100001389

HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).

Definition at line 11338 of file cv.hpp.

UNIMOD_Oxidation_NEM = 100001390

Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.

Definition at line 11341 of file cv.hpp.

UNIMOD_NHS_fluorescein = 100001391

NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.

Definition at line 11344 of file cv.hpp.

UNIMOD_DiART6plex = 100001392

DiART6plex: Representative mass and accurate mass for 114.

Definition at line 11347 of file cv.hpp.

UNIMOD_DiART6plex115 = 100001393

DiART6plex115: Accurate mass for DiART6plex 115.

Definition at line 11350 of file cv.hpp.

UNIMOD_DiART6plex116_119 = 100001394

DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.

Definition at line 11353 of file cv.hpp.

UNIMOD_DiART6plex117 = 100001395

DiART6plex117: Accurate mass for DiART6plex 117.

Definition at line 11356 of file cv.hpp.

UNIMOD_DiART6plex118 = 100001396

DiART6plex118: Accurate mass for DiART6plex 118.

Definition at line 11359 of file cv.hpp.

UNIMOD_Iodoacetanilide = 100001397

Iodoacetanilide: Iodoacetanilide derivative.

Definition at line 11362 of file cv.hpp.

UNIMOD_Iodoacetanilide_13C_6_ = 100001398

Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.

Definition at line 11365 of file cv.hpp.

UNIMOD_Dap_DSP = 100001399

Dap-DSP: Diaminopimelic acid-DSP monolinked.

Definition at line 11368 of file cv.hpp.

UNIMOD_MurNAc = 100001400

MurNAc: N-Acetylmuramic acid.

Definition at line 11371 of file cv.hpp.

UNIMOD_Label_2H_7_15N_4_ = 100001402

Label:2H(7)15N(4): Label:2H(7)15N(4).

Definition at line 11374 of file cv.hpp.

UNIMOD_Label_2H_6_15N_1_ = 100001403

Label:2H(6)15N(1): Label:2H(6)15N(1).

Definition at line 11377 of file cv.hpp.

UNIMOD_EEEDVIEVYQEQTGG = 100001405

EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.

Definition at line 11380 of file cv.hpp.

UNIMOD_EDEDTIDVFQQQTGG = 100001406

EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.

Definition at line 11383 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_NeuAc_2_ = 100001408

Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).

Definition at line 11386 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_NeuAc_1_ = 100001409

Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.

Definition at line 11389 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_ = 100001410

dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.

Definition at line 11392 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_ = 100001411

dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).

Definition at line 11395 of file cv.hpp.

UNIMOD_s_GlcNAc = 100001412

s-GlcNAc: O3S1HexNAc1.

Definition at line 11398 of file cv.hpp.

UNIMOD_PhosphoHex_2_ = 100001413

PhosphoHex(2): H1O3P1Hex2.

Definition at line 11401 of file cv.hpp.

UNIMOD_Trimethyl_13C_3_2H_9_ = 100001414

Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.

Definition at line 11404 of file cv.hpp.

UNIMOD_15N_oxobutanoic = 100001419

15N-oxobutanoic: Loss of ammonia (15N).

Definition at line 11407 of file cv.hpp.

UNIMOD_spermine = 100001420

spermine: Spermine adduct.

Definition at line 11410 of file cv.hpp.

UNIMOD_spermidine = 100001421

spermidine: Spermidine adduct.

Definition at line 11413 of file cv.hpp.

UNIMOD_Biotin_Thermo_21330 = 100001423

Biotin:Thermo-21330: Biotin_PEG4.

Definition at line 11416 of file cv.hpp.

UNIMOD_Pentose = 100001425

Pentose: Pentose.

Definition at line 11419 of file cv.hpp.

UNIMOD_Hex_1_Pent_1_ = 100001426

Hex(1)Pent(1): Hex Pent.

Definition at line 11422 of file cv.hpp.

UNIMOD_Hex_1_HexA_1_ = 100001427

Hex(1)HexA(1): Hex HexA.

Definition at line 11425 of file cv.hpp.

UNIMOD_Hex_1_Pent_2_ = 100001428

Hex(1)Pent(2): Hex Pent(2).

Definition at line 11428 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_Phos_1_ = 100001429

Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.

Definition at line 11431 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_Sulf_1_ = 100001430

Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.

Definition at line 11434 of file cv.hpp.

UNIMOD_Hex_1_NeuAc_1_ = 100001431

Hex(1)NeuAc(1): Hex NeuAc.

Definition at line 11437 of file cv.hpp.

UNIMOD_Hex_1_NeuGc_1_ = 100001432

Hex(1)NeuGc(1): Hex NeuGc.

Definition at line 11440 of file cv.hpp.

UNIMOD_HexNAc_3_ = 100001433

HexNAc(3): HexNAc(3).

Definition at line 11443 of file cv.hpp.

UNIMOD_HexNAc_1_NeuAc_1_ = 100001434

HexNAc(1)NeuAc(1): HexNAc NeuAc.

Definition at line 11446 of file cv.hpp.

UNIMOD_HexNAc_1_NeuGc_1_ = 100001435

HexNAc(1)NeuGc(1): HexNAc NeuGc.

Definition at line 11449 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_ = 100001436

Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.

Definition at line 11452 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_ = 100001437

Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).

Definition at line 11455 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_ = 100001438

Hex(2)HexNAc(1): Hex(2) HexNAc.

Definition at line 11458 of file cv.hpp.

UNIMOD_Hex_1_HexA_1_HexNAc_1_ = 100001439

Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.

Definition at line 11461 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_Me_1_ = 100001440

Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.

Definition at line 11464 of file cv.hpp.

UNIMOD_Hex_3_Phos_1_ = 100001441

Hex(3)Phos(1): Hex(3) Phos.

Definition at line 11467 of file cv.hpp.

UNIMOD_Hex_1_NeuAc_1_Pent_1_ = 100001442

Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.

Definition at line 11470 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_Sulf_1_ = 100001443

Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.

Definition at line 11473 of file cv.hpp.

UNIMOD_Hex_2_NeuAc_1_ = 100001444

Hex(2)NeuAc(1): Hex(2) NeuAc.

Definition at line 11476 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_ = 100001445

dHex(2)Hex(2): Hex2 dHex2.

Definition at line 11479 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexA_1_ = 100001446

dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.

Definition at line 11482 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_Sulf_1_ = 100001447

Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.

Definition at line 11485 of file cv.hpp.

UNIMOD_Hex_4_ = 100001448

Hex(4): Hex(4).

Definition at line 11488 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_ = 100001449

dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.

Definition at line 11491 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_NeuAc_1_ = 100001450

Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc.

Definition at line 11494 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_2_Pent_1_ = 100001451

Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.

Definition at line 11497 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_2_ = 100001452

Hex(4)HexNAc(2): Hex(4) HexNAc(2).

Definition at line 11500 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_ = 100001453

dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.

Definition at line 11503 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_ = 100001454

dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.

Definition at line 11506 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_2_NeuAc_1_ = 100001455

Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.

Definition at line 11509 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_2_Pent_1_ = 100001456

Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.

Definition at line 11512 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_Pent_1_ = 100001457

Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.

Definition at line 11515 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_2_Phos_1_ = 100001458

Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.

Definition at line 11518 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_ = 100001459

dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.

Definition at line 11521 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_1_ = 100001460

Hex(7)HexNAc(1): Hex(7) HexNAc.

Definition at line 11524 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_2_NeuAc_1_ = 100001461

Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc.

Definition at line 11527 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_2_ = 100001462

dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).

Definition at line 11530 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_ = 100001463

dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.

Definition at line 11533 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_4_Sulf_1_ = 100001464

Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.

Definition at line 11536 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_2_ = 100001465

Hex(6)HexNAc(2): Hex(6) HexNAc(2).

Definition at line 11539 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_3_Pent_1_ = 100001466

Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.

Definition at line 11542 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_ = 100001467

dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).

Definition at line 11545 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_3_ = 100001468

Hex(5)HexNAc(3): Hex(5) HexNAc(3).

Definition at line 11548 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_4_Pent_1_ = 100001469

Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.

Definition at line 11551 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_2_Phos_1_ = 100001470

Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.

Definition at line 11554 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_ = 100001471

dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.

Definition at line 11557 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_ = 100001472

dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.

Definition at line 11560 of file cv.hpp.

UNIMOD_Hex_8_HexNAc_1_ = 100001473

Hex(8)HexNAc(1): Hex(8) HexNAc.

Definition at line 11563 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_ = 100001474

dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).

Definition at line 11566 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_ = 100001475

dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.

Definition at line 11569 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_ = 100001476

dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.

Definition at line 11572 of file cv.hpp.

UNIMOD_dHex_1_Hex_6_HexNAc_2_ = 100001477

dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).

Definition at line 11575 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_ = 100001478

dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.

Definition at line 11578 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_Sulf_1_ = 100001479

Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.

Definition at line 11581 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_2_ = 100001480

Hex(7)HexNAc(2): Hex(7) HexNAc(2).

Definition at line 11584 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_3_ = 100001481

dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).

Definition at line 11587 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_3_Pent_1_ = 100001482

Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.

Definition at line 11590 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_3_NeuGc_1_ = 100001483

Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.

Definition at line 11593 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_ = 100001484

dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).

Definition at line 11596 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_ = 100001485

dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.

Definition at line 11599 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_5_Sulf_1_ = 100001486

Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.

Definition at line 11602 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_3_ = 100001487

Hex(6)HexNAc(3): Hex(6) HexNAc(3).

Definition at line 11605 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_4_NeuAc_1_ = 100001488

Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc.

Definition at line 11608 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_Pent_1_ = 100001489

Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.

Definition at line 11611 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_2_Phos_1_ = 100001490

Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.

Definition at line 11614 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_ = 100001491

Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.

Definition at line 11617 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_ = 100001492

dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3).

Definition at line 11620 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_ = 100001493

dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.

Definition at line 11623 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_ = 100001494

dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).

Definition at line 11626 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_3_Phos_1_ = 100001495

Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.

Definition at line 11629 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_5_ = 100001496

Hex(4)HexNAc(5): Hex(4) HexNAc(5).

Definition at line 11632 of file cv.hpp.

UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_ = 100001497

dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.

Definition at line 11635 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_ = 100001498

dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.

Definition at line 11638 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_ = 100001499

dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.

Definition at line 11641 of file cv.hpp.

UNIMOD_dHex_1_Hex_7_HexNAc_2_ = 100001500

dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).

Definition at line 11644 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_ = 100001501

dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc.

Definition at line 11647 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_2_Phos_2_ = 100001502

Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).

Definition at line 11650 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_Sulf_1_ = 100001503

Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.

Definition at line 11653 of file cv.hpp.

UNIMOD_Hex_8_HexNAc_2_ = 100001504

Hex(8)HexNAc(2): Hex(8) HexNAc(2).

Definition at line 11656 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_ = 100001505

dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).

Definition at line 11659 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_ = 100001506

dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc.

Definition at line 11662 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_ = 100001507

dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.

Definition at line 11665 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_ = 100001508

dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.

Definition at line 11668 of file cv.hpp.

UNIMOD_dHex_1_Hex_6_HexNAc_3_ = 100001509

dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).

Definition at line 11671 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_ = 100001510

dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.

Definition at line 11674 of file cv.hpp.

UNIMOD_dHex_3_Hex_3_HexNAc_4_ = 100001511

dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).

Definition at line 11677 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_ = 100001512

dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.

Definition at line 11680 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_5_Sulf_1_ = 100001513

Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.

Definition at line 11683 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_3_ = 100001514

Hex(7)HexNAc(3): Hex(7) HexNAc(3).

Definition at line 11686 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_ = 100001515

dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.

Definition at line 11689 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_ = 100001516

Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.

Definition at line 11692 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_6_Sulf_1_ = 100001517

Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.

Definition at line 11695 of file cv.hpp.

UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_ = 100001518

dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.

Definition at line 11698 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_5_ = 100001519

dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).

Definition at line 11701 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_ = 100001520

dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.

Definition at line 11704 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_3_Phos_1_ = 100001521

Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.

Definition at line 11707 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_4_Me_3_ = 100001522

Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).

Definition at line 11710 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_ = 100001523

dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.

Definition at line 11713 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_3_NeuAc_2_ = 100001524

Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).

Definition at line 11716 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_ = 100001525

dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).

Definition at line 11719 of file cv.hpp.

UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_ = 100001526

dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.

Definition at line 11722 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_ = 100001527

dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.

Definition at line 11725 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_ = 100001528

dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).

Definition at line 11728 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_ = 100001529

dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.

Definition at line 11731 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_6_Sulf_2_ = 100001530

Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).

Definition at line 11734 of file cv.hpp.

UNIMOD_Hex_9_HexNAc_2_ = 100001531

Hex(9)HexNAc(2): Hex(9) HexNAc(2).

Definition at line 11737 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_6_ = 100001532

Hex(4)HexNAc(6): Hex(4) HexNAc(6).

Definition at line 11740 of file cv.hpp.

UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_ = 100001533

dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.

Definition at line 11743 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_ = 100001534

dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc.

Definition at line 11746 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_ = 100001535

dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.

Definition at line 11749 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_ = 100001536

dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.

Definition at line 11752 of file cv.hpp.

UNIMOD_dHex_1_Hex_7_HexNAc_3_ = 100001537

dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).

Definition at line 11755 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_ = 100001538

dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.

Definition at line 11758 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_ = 100001539

dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).

Definition at line 11761 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_7_ = 100001540

Hex(3)HexNAc(7): Hex(3) HexNAc(7).

Definition at line 11764 of file cv.hpp.

UNIMOD_dHex_2_Hex_5_HexNAc_4_ = 100001541

dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).

Definition at line 11767 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_ = 100001542

dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.

Definition at line 11770 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_ = 100001543

dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).

Definition at line 11773 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_ = 100001544

dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.

Definition at line 11776 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_NeuGc_1_ = 100001545

Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.

Definition at line 11779 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_ = 100001546

dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.

Definition at line 11782 of file cv.hpp.

UNIMOD_dHex_1_Hex_6_HexNAc_4_ = 100001547

dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).

Definition at line 11785 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_ = 100001548

dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.

Definition at line 11788 of file cv.hpp.

UNIMOD_Hex_7_HexNAc_4_ = 100001549

Hex(7)HexNAc(4): Hex(7) HexNAc(4).

Definition at line 11791 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_ = 100001550

dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.

Definition at line 11794 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_5_NeuAc_1_ = 100001551

Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.

Definition at line 11797 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_ = 100001552

Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.

Definition at line 11800 of file cv.hpp.

UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_ = 100001553

dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.

Definition at line 11803 of file cv.hpp.

UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_ = 100001554

dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.

Definition at line 11806 of file cv.hpp.

UNIMOD_dHex_1_Hex_5_HexNAc_5_ = 100001555

dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).

Definition at line 11809 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_ = 100001556

dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.

Definition at line 11812 of file cv.hpp.

UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_ = 100001557

dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.

Definition at line 11815 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_7_Sulf_1_ = 100001558

Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.

Definition at line 11818 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_5_ = 100001559

Hex(6)HexNAc(5): Hex(6) HexNAc(5).

Definition at line 11821 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_ = 100001560

Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.

Definition at line 11824 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_6_NeuAc_1_ = 100001561

Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.

Definition at line 11827 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_6_ = 100001562

dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).

Definition at line 11830 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuGc_1_ = 100001563

Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.

Definition at line 11833 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_1_ = 100001564

dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.

Definition at line 11836 of file cv.hpp.

UNIMOD_HexNAc_3_Sulf_1_ = 100001565

HexNAc(3)Sulf(1): HexNAc(3) Sulf.

Definition at line 11839 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_1_ = 100001566

Hex(3)HexNAc(1): Hex(3) HexNAc.

Definition at line 11842 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_ = 100001567

Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.

Definition at line 11845 of file cv.hpp.

UNIMOD_HexNAc_2_NeuAc_1_ = 100001568

HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.

Definition at line 11848 of file cv.hpp.

UNIMOD_HexNAc_1_Kdn_2_ = 100001570

HexNAc(1)Kdn(2): HexNAc Kdn(2).

Definition at line 11851 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_1_Me_1_ = 100001571

Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.

Definition at line 11854 of file cv.hpp.

UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_ = 100001572

Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.

Definition at line 11857 of file cv.hpp.

UNIMOD_HexNAc_2_NeuGc_1_ = 100001573

HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.

Definition at line 11860 of file cv.hpp.

UNIMOD_Hex_4_Phos_1_ = 100001575

Hex(4)Phos(1): Hex(4) Phos.

Definition at line 11863 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_ = 100001577

Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.

Definition at line 11866 of file cv.hpp.

UNIMOD_Hex_1_HexA_1_HexNAc_2_ = 100001578

Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).

Definition at line 11869 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_ = 100001579

dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.

Definition at line 11872 of file cv.hpp.

UNIMOD_dHex_1_HexNAc_3_ = 100001580

dHex(1)HexNAc(3): DHex HexNAc(3).

Definition at line 11875 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_ = 100001581

dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn.

Definition at line 11878 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_3_ = 100001582

Hex(1)HexNAc(3): Hex HexNAc(3).

Definition at line 11881 of file cv.hpp.

UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_ = 100001583

HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.

Definition at line 11884 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_ = 100001584

dHex(2)Hex(3): DHex(2) Hex(3).

Definition at line 11887 of file cv.hpp.

UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_ = 100001585

Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.

Definition at line 11890 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexA_1_ = 100001586

dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.

Definition at line 11893 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_ = 100001587

dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.

Definition at line 11896 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_ = 100001588

dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.

Definition at line 11899 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_Sulf_1_ = 100001589

Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.

Definition at line 11902 of file cv.hpp.

UNIMOD_Hex_5_ = 100001590

Hex(5): Hex(5).

Definition at line 11905 of file cv.hpp.

UNIMOD_HexNAc_4_ = 100001591

HexNAc(4): HexNAc(4).

Definition at line 11908 of file cv.hpp.

UNIMOD_HexNAc_1_NeuGc_2_ = 100001592

HexNAc(1)NeuGc(2): HexNAc NeuGc(2).

Definition at line 11911 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_ = 100001593

dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc.

Definition at line 11914 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_1_ = 100001594

dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.

Definition at line 11917 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_NeuGc_1_ = 100001595

Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.

Definition at line 11920 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_1_ = 100001596

dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.

Definition at line 11923 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_ = 100001597

dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.

Definition at line 11926 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_3_Sulf_1_ = 100001598

Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.

Definition at line 11929 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_1_ = 100001599

Hex(4)HexNAc(1): Hex(4) HexNAc.

Definition at line 11932 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_NeuAc_1_ = 100001600

Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.

Definition at line 11935 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_NeuGc_1_ = 100001602

Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.

Definition at line 11938 of file cv.hpp.

UNIMOD_Hex_5_Phos_1_ = 100001604

Hex(5)Phos(1): Hex(5) Phos.

Definition at line 11941 of file cv.hpp.

UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_ = 100001606

dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.

Definition at line 11944 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_ = 100001607

dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.

Definition at line 11947 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_3_ = 100001608

dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).

Definition at line 11950 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_ = 100001609

dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.

Definition at line 11953 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_ = 100001610

Hex(2)HexNAc(3): Hex(2) HexNAc(3).

Definition at line 11956 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_ = 100001611

Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.

Definition at line 11959 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_ = 100001612

dHex(2)Hex(4): DHex(2) Hex(4).

Definition at line 11962 of file cv.hpp.

UNIMOD_dHex_2_HexNAc_2_Kdn_1_ = 100001614

dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.

Definition at line 11965 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_ = 100001615

dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.

Definition at line 11968 of file cv.hpp.

UNIMOD_dHex_1_HexNAc_4_ = 100001616

dHex(1)HexNAc(4): DHex HexNAc(4).

Definition at line 11971 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_ = 100001617

Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.

Definition at line 11974 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_ = 100001618

dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn.

Definition at line 11977 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuGc_2_ = 100001619

Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).

Definition at line 11980 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_ = 100001620

Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).

Definition at line 11983 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_ = 100001621

dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.

Definition at line 11986 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_ = 100001622

dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.

Definition at line 11989 of file cv.hpp.

UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_ = 100001623

Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.

Definition at line 11992 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_ = 100001624

dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.

Definition at line 11995 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_ = 100001625

dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.

Definition at line 11998 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_Sulf_1_ = 100001626

Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.

Definition at line 12001 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_1_ = 100001627

Hex(5)HexNAc(1): Hex(5) HexNAc.

Definition at line 12004 of file cv.hpp.

UNIMOD_HexNAc_5_ = 100001628

HexNAc(5): HexNAc(5).

Definition at line 12007 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuGc_1_ = 100001629

dHex(1)Hex(1)HexNAc(2)NeuGc(1): DHex Hex HexNAc(2) NeuGc.

Definition at line 12010 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_ = 100001630

Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).

Definition at line 12013 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_NeuGc_1_ = 100001631

Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.

Definition at line 12016 of file cv.hpp.

UNIMOD_Hex_5_Phos_3_ = 100001632

Hex(5)Phos(3): Hex(5) Phos(3).

Definition at line 12019 of file cv.hpp.

UNIMOD_Hex_6_Phos_1_ = 100001633

Hex(6)Phos(1): Hex(6) Phos.

Definition at line 12022 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_ = 100001634

dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).

Definition at line 12025 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_ = 100001635

dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.

Definition at line 12028 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_3_NeuAc_1_ = 100001636

Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.

Definition at line 12031 of file cv.hpp.

UNIMOD_dHex_2_Hex_1_HexNAc_3_ = 100001637

dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).

Definition at line 12034 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_3_NeuGc_1_ = 100001638

Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.

Definition at line 12037 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_ = 100001639

dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.

Definition at line 12040 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_ = 100001640

dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.

Definition at line 12043 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_ = 100001641

dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).

Definition at line 12046 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001642

Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.

Definition at line 12049 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_ = 100001643

dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.

Definition at line 12052 of file cv.hpp.

UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_ = 100001644

dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn.

Definition at line 12055 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_4_ = 100001645

dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).

Definition at line 12058 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_4_ = 100001646

Hex(2)HexNAc(4): Hex(2) HexNAc(4).

Definition at line 12061 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_NeuGc_2_ = 100001647

Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).

Definition at line 12064 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_1_ = 100001648

dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.

Definition at line 12067 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_NeuAc_2_ = 100001649

Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).

Definition at line 12070 of file cv.hpp.

UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_ = 100001650

dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.

Definition at line 12073 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_ = 100001651

dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.

Definition at line 12076 of file cv.hpp.

UNIMOD_dHex_1_HexNAc_5_ = 100001652

dHex(1)HexNAc(5): DHex HexNAc(5).

Definition at line 12079 of file cv.hpp.

UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_ = 100001653

dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc.

Definition at line 12082 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexNAc_2_ = 100001654

dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).

Definition at line 12085 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_Sulf_1_ = 100001655

Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.

Definition at line 12088 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_ = 100001656

dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).

Definition at line 12091 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_ = 100001657

dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc.

Definition at line 12094 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_ = 100001658

dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.

Definition at line 12097 of file cv.hpp.

UNIMOD_Hex_6_Phos_3_ = 100001659

Hex(6)Phos(3): Hex(6) Phos(3).

Definition at line 12100 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_ = 100001660

dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).

Definition at line 12103 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_ = 100001661

dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc.

Definition at line 12106 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_ = 100001662

Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.

Definition at line 12109 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_ = 100001663

dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.

Definition at line 12112 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_3_ = 100001664

Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).

Definition at line 12115 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuGc_1_ = 100001665

Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.

Definition at line 12118 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001666

dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.

Definition at line 12121 of file cv.hpp.

UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_ = 100001667

dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.

Definition at line 12124 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_ = 100001668

dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.

Definition at line 12127 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_ = 100001669

dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.

Definition at line 12130 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_ = 100001670

dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.

Definition at line 12133 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_4_ = 100001671

dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).

Definition at line 12136 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuGc_3_ = 100001672

Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).

Definition at line 12139 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_ = 100001673

dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.

Definition at line 12142 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_ = 100001674

dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.

Definition at line 12145 of file cv.hpp.

UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_ = 100001675

dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).

Definition at line 12148 of file cv.hpp.

UNIMOD_dHex_3_HexNAc_3_Kdn_1_ = 100001676

dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.

Definition at line 12151 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_ = 100001678

Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.

Definition at line 12154 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_ = 100001679

dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.

Definition at line 12157 of file cv.hpp.

UNIMOD_dHex_2_HexNAc_5_ = 100001680

dHex(2)HexNAc(5): DHex(2) HexNAc(5).

Definition at line 12160 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_NeuAc_2_ = 100001681

Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).

Definition at line 12163 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_ = 100001682

dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc.

Definition at line 12166 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_ = 100001683

dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.

Definition at line 12169 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_ = 100001684

dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc.

Definition at line 12172 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_5_ = 100001685

Hex(2)HexNAc(5): Hex(2) HexNAc(5).

Definition at line 12175 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_ = 100001686

dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.

Definition at line 12178 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_3_NeuAc_2_ = 100001687

Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).

Definition at line 12181 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_ = 100001688

dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.

Definition at line 12184 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexNAc_3_ = 100001689

dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).

Definition at line 12187 of file cv.hpp.

UNIMOD_Hex_7_Phos_3_ = 100001690

Hex(7)Phos(3): Hex(7) Phos(3).

Definition at line 12190 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_ = 100001691

dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).

Definition at line 12193 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuAc_1_ = 100001692

Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc.

Definition at line 12196 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_ = 100001693

dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).

Definition at line 12199 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_ = 100001694

Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.

Definition at line 12202 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_ = 100001695

dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.

Definition at line 12205 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuGc_1_ = 100001696

Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.

Definition at line 12208 of file cv.hpp.

UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_ = 100001697

dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.

Definition at line 12211 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_ = 100001698

dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.

Definition at line 12214 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_ = 100001699

dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.

Definition at line 12217 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_4_NeuAc_1_ = 100001700

Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.

Definition at line 12220 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_4_ = 100001701

dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).

Definition at line 12223 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_ = 100001702

dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.

Definition at line 12226 of file cv.hpp.

UNIMOD_dHex_4_HexNAc_3_Kdn_1_ = 100001703

dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.

Definition at line 12229 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_NeuGc_3_ = 100001705

Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).

Definition at line 12232 of file cv.hpp.

UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_ = 100001706

dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).

Definition at line 12235 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_ = 100001707

dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.

Definition at line 12238 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_ = 100001708

dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).

Definition at line 12241 of file cv.hpp.

UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_ = 100001709

dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.

Definition at line 12244 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_ = 100001711

Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.

Definition at line 12247 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_2_NeuAc_2_ = 100001712

Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).

Definition at line 12250 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_ = 100001713

Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.

Definition at line 12253 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_ = 100001714

dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).

Definition at line 12256 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_ = 100001715

dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc.

Definition at line 12259 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_ = 100001716

dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.

Definition at line 12262 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuAc_2_ = 100001717

Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).

Definition at line 12265 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_ = 100001718

dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.

Definition at line 12268 of file cv.hpp.

UNIMOD_dHex_4_Hex_2_HexNAc_3_ = 100001719

dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).

Definition at line 12271 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_ = 100001720

Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.

Definition at line 12274 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_ = 100001721

dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc.

Definition at line 12277 of file cv.hpp.

UNIMOD_dHex_3_Hex_3_HexNAc_3_ = 100001722

dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).

Definition at line 12280 of file cv.hpp.

UNIMOD_Hex_8_Phos_3_ = 100001723

Hex(8)Phos(3): Hex(8) Phos(3).

Definition at line 12283 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_ = 100001724

dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.

Definition at line 12286 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuGc_2_ = 100001725

Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).

Definition at line 12289 of file cv.hpp.

UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_ = 100001726

dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.

Definition at line 12292 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_ = 100001727

dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.

Definition at line 12295 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexNAc_4_ = 100001728

dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).

Definition at line 12298 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuGc_4_ = 100001729

Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).

Definition at line 12301 of file cv.hpp.

UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_ = 100001730

dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.

Definition at line 12304 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_Sulf_2_ = 100001732

Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).

Definition at line 12307 of file cv.hpp.

UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_ = 100001733

dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn.

Definition at line 12310 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_5_ = 100001735

dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).

Definition at line 12313 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_ = 100001736

dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.

Definition at line 12316 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_ = 100001737

dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.

Definition at line 12319 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuAc_2_ = 100001738

Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).

Definition at line 12322 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_ = 100001739

dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc.

Definition at line 12325 of file cv.hpp.

UNIMOD_dHex_4_Hex_3_HexNAc_3_ = 100001740

dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).

Definition at line 12328 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuGc_1_ = 100001741

dHex(2)Hex(3)HexNAc(3)NeuGc(1): DHex(2) Hex(3) HexNAc(3) NeuGc.

Definition at line 12331 of file cv.hpp.

UNIMOD_Hex_9_Phos_3_ = 100001742

Hex(9)Phos(3): Hex(9) Phos(3).

Definition at line 12334 of file cv.hpp.

UNIMOD_dHex_2_HexNAc_7_ = 100001743

dHex(2)HexNAc(7): DHex(2) HexNAc(7).

Definition at line 12337 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_1_NeuGc_4_ = 100001744

Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).

Definition at line 12340 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_ = 100001745

Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.

Definition at line 12343 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_5_ = 100001746

dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).

Definition at line 12346 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_ = 100001747

dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).

Definition at line 12349 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_ = 100001748

dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.

Definition at line 12352 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuAc_3_ = 100001749

Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).

Definition at line 12355 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_ = 100001750

dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).

Definition at line 12358 of file cv.hpp.

UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_ = 100001751

dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.

Definition at line 12361 of file cv.hpp.

UNIMOD_Hex_2_HexNAc_3_NeuGc_3_ = 100001752

Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).

Definition at line 12364 of file cv.hpp.

UNIMOD_Hex_10_Phos_3_ = 100001753

Hex(10)Phos(3): Hex(10) Phos(3).

Definition at line 12367 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_ = 100001754

dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).

Definition at line 12370 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuGc_5_ = 100001755

Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).

Definition at line 12373 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_ = 100001756

Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).

Definition at line 12376 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_ = 100001757

Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).

Definition at line 12379 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_ = 100001758

dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).

Definition at line 12382 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_ = 100001759

Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).

Definition at line 12385 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_2_ = 100001760

dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).

Definition at line 12388 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_2_ = 100001761

dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).

Definition at line 12391 of file cv.hpp.

UNIMOD_dHex_1_Hex_2_HexNAc_3_ = 100001762

dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).

Definition at line 12394 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_3_ = 100001763

Hex(3)HexNAc(3): Hex(3) HexNAc(3).

Definition at line 12397 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_ = 100001764

dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.

Definition at line 12400 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_2_ = 100001765

dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).

Definition at line 12403 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_2_ = 100001766

dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).

Definition at line 12406 of file cv.hpp.

UNIMOD_dHex_2_Hex_2_HexNAc_3_ = 100001767

dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).

Definition at line 12409 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_3_ = 100001768

dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).

Definition at line 12412 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_3_ = 100001769

Hex(4)HexNAc(3): Hex(4) HexNAc(3).

Definition at line 12415 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_2_ = 100001770

dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).

Definition at line 12418 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_3_ = 100001771

dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).

Definition at line 12421 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_5_ = 100001772

Hex(3)HexNAc(5): Hex(3) HexNAc(5).

Definition at line 12424 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_3_NeuAc_1_ = 100001773

Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc.

Definition at line 12427 of file cv.hpp.

UNIMOD_dHex_2_Hex_3_HexNAc_4_ = 100001774

dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).

Definition at line 12430 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_5_ = 100001775

dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).

Definition at line 12433 of file cv.hpp.

UNIMOD_Hex_3_HexNAc_6_ = 100001776

Hex(3)HexNAc(6): Hex(3) HexNAc(6).

Definition at line 12436 of file cv.hpp.

UNIMOD_Hex_4_HexNAc_4_NeuAc_1_ = 100001777

Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.

Definition at line 12439 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_4_ = 100001778

dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4).

Definition at line 12442 of file cv.hpp.

UNIMOD_Hex_6_HexNAc_4_ = 100001779

Hex(6)HexNAc(4): Hex(6) HexNAc(4).

Definition at line 12445 of file cv.hpp.

UNIMOD_Hex_5_HexNAc_5_ = 100001780

Hex(5)HexNAc(5): Hex(5) HexNAc(5).

Definition at line 12448 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_6_ = 100001781

dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).

Definition at line 12451 of file cv.hpp.

UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_ = 100001782

dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc.

Definition at line 12454 of file cv.hpp.

UNIMOD_dHex_3_Hex_4_HexNAc_4_ = 100001783

dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).

Definition at line 12457 of file cv.hpp.

UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_ = 100001784

dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.

Definition at line 12460 of file cv.hpp.

UNIMOD_dHex_2_Hex_4_HexNAc_5_ = 100001785

dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).

Definition at line 12463 of file cv.hpp.

UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_ = 100001786

Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.

Definition at line 12466 of file cv.hpp.

UNIMOD_Label_13C_2_15N_2_ = 100001787

Label:13C(2)15N(2): 13C(2) 15N(2).

Definition at line 12469 of file cv.hpp.

UNIMOD_Xlink_DSS_NH2 = 100001789

Xlink:DSS-NH2: Ammonium-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.

Definition at line 12472 of file cv.hpp.

UNIMOD_NQIGG = 100001799

NQIGG: SUMOylation by Giardia lamblia.

Definition at line 12475 of file cv.hpp.

UNIMOD_Carboxyethylpyrrole = 100001800

Carboxyethylpyrrole: Carboxyethylpyrrole.

Definition at line 12478 of file cv.hpp.

UNIMOD_Fluorescein_tyramine = 100001801

Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.

Definition at line 12481 of file cv.hpp.

UNIMOD_GEE = 100001824

GEE: Transamidation of glycine ethyl ester to glutamine.

Definition at line 12484 of file cv.hpp.

UNIMOD_RNPXL = 100001825

RNPXL: Simulate peptide-RNA conjugates.

Definition at line 12487 of file cv.hpp.

UNIMOD_Glu__pyro_Glu_Methyl = 100001826

Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.

Definition at line 12490 of file cv.hpp.

UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_ = 100001827

Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.

Definition at line 12493 of file cv.hpp.

UO_unit = 200000000

unit: A unit of measurement is a standardized quantity of a physical quality.

Definition at line 12496 of file cv.hpp.

Referenced by testIsA(), and testIsChildOf().

UO_length_unit = 200000001

length unit: A unit which is a standard measure of the distance between two points.

Definition at line 12499 of file cv.hpp.

UO_mass_unit = 200000002

mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.

Definition at line 12502 of file cv.hpp.

Referenced by testIsA(), and testParamContainer().

UO_time_unit = 200000003

time unit: A unit which is a standard measure of the dimension in which events occur in sequence.

Definition at line 12505 of file cv.hpp.

UO_electric_current_unit = 200000004

electric current unit: A unit which is a standard measure of the flow of electric charge.

Definition at line 12508 of file cv.hpp.

UO_temperature_unit = 200000005

temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.

Definition at line 12511 of file cv.hpp.

UO_substance_unit = 200000006

substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.

Definition at line 12514 of file cv.hpp.

UO_luminous_intensity_unit = 200000007

luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.

Definition at line 12517 of file cv.hpp.

UO_meter = 200000008

meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.

Definition at line 12520 of file cv.hpp.

UO_kilogram = 200000009

kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.

Definition at line 12523 of file cv.hpp.

UO_second = 200000010

second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.

Definition at line 12526 of file cv.hpp.

Referenced by createSpectrumList(), initializeTinyMGF(), initializeTinyMS1(), initializeTinyMS2(), test(), testChromatograms(), testCVParam(), testParamContainer(), testUserParam(), and testWrapSortScanTime().

UO_ampere = 200000011

ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.

Definition at line 12529 of file cv.hpp.

UO_kelvin = 200000012

kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.

Definition at line 12532 of file cv.hpp.

UO_mole = 200000013

mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.

Definition at line 12535 of file cv.hpp.

UO_candela = 200000014

candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.

Definition at line 12538 of file cv.hpp.

UO_centimeter = 200000015

centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.

Definition at line 12541 of file cv.hpp.

UO_millimeter = 200000016

millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.

Definition at line 12544 of file cv.hpp.

UO_micrometer = 200000017

micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.

Definition at line 12547 of file cv.hpp.

UO_nanometer = 200000018

nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.

Definition at line 12550 of file cv.hpp.

UO_angstrom = 200000019

angstrom: A length unit which is equal to 10 [-10] m.

Definition at line 12553 of file cv.hpp.

UO_picometer = 200000020

picometer: A length unit which is equal to 10^[-12] m.

Definition at line 12556 of file cv.hpp.

UO_gram = 200000021

gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.

Definition at line 12559 of file cv.hpp.

UO_milligram = 200000022

milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.

Definition at line 12562 of file cv.hpp.

UO_microgram = 200000023

microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.

Definition at line 12565 of file cv.hpp.

UO_nanogram = 200000024

nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.

Definition at line 12568 of file cv.hpp.

UO_picogram = 200000025

picogram: A mass unit which is equal to 10^[-12] g.

Definition at line 12571 of file cv.hpp.

UO_femtogram = 200000026

femtogram: A mass unit which is equal to 10^[-15] g.

Definition at line 12574 of file cv.hpp.

UO_degree_celsius = 200000027

degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.

Definition at line 12577 of file cv.hpp.

UO_millisecond = 200000028

millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.

Definition at line 12580 of file cv.hpp.

UO_microsecond = 200000029

microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.

Definition at line 12583 of file cv.hpp.

UO_picosecond = 200000030

picosecond: A time unit which is equal to 10^[-12] s.

Definition at line 12586 of file cv.hpp.

UO_minute = 200000031

minute: A time unit which is equal to 60 seconds.

Definition at line 12589 of file cv.hpp.

Referenced by initializeTestData(), test(), testParamContainer(), testScan(), testScanList(), testSpectrum(), testUserParam(), and testWrapSortScanTime().

UO_hour = 200000032

hour: A time unit which is equal to 3600 seconds or 60 minutes.

Definition at line 12592 of file cv.hpp.

UO_day = 200000033

day: A time unit which is equal to 24 hours.

Definition at line 12595 of file cv.hpp.

UO_week = 200000034

week: A time unit which is equal to 7 days.

Definition at line 12598 of file cv.hpp.

UO_month = 200000035

month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.

Definition at line 12601 of file cv.hpp.

UO_year = 200000036

year: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.

Definition at line 12604 of file cv.hpp.

UO_milliampere = 200000037

milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.

Definition at line 12607 of file cv.hpp.

UO_microampere = 200000038

microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.

Definition at line 12610 of file cv.hpp.

UO_micromole = 200000039

micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.

Definition at line 12613 of file cv.hpp.

UO_millimole = 200000040

millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.

Definition at line 12616 of file cv.hpp.

UO_nanomole = 200000041

nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.

Definition at line 12619 of file cv.hpp.

UO_picomole = 200000042

picomole: A substance unit equal to 10^[-12] mol.

Definition at line 12622 of file cv.hpp.

UO_femtomole = 200000043

femtomole: A substance unit equal to 10^[-15] mol.

Definition at line 12625 of file cv.hpp.

UO_attomole = 200000044

attomole: A substance unit equal to 10^[-18] mol.

Definition at line 12628 of file cv.hpp.

UO_base_unit = 200000045

base unit: A unit which is one of a particular measure to which all measures of that type can be related.

Definition at line 12631 of file cv.hpp.

UO_derived_unit_OBSOLETE = 200000046

derived unit: A unit which is derived from base units.

Definition at line 12634 of file cv.hpp.

UO_area_unit = 200000047

area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.

Definition at line 12637 of file cv.hpp.

UO_acceleration_unit = 200000048

acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.

Definition at line 12640 of file cv.hpp.

UO_angular_velocity_unit = 200000049

angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.

Definition at line 12643 of file cv.hpp.

UO_angular_acceleration_unit = 200000050

angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.

Definition at line 12646 of file cv.hpp.

UO_concentration_unit = 200000051

concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.

Definition at line 12649 of file cv.hpp.

UO_mass_density_unit = 200000052

mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.

Definition at line 12652 of file cv.hpp.

UO_luminance_unit = 200000053

luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.

Definition at line 12655 of file cv.hpp.

UO_area_density_unit = 200000054

area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.

Definition at line 12658 of file cv.hpp.

UO_molar_mass_unit = 200000055

molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.

Definition at line 12661 of file cv.hpp.

UO_molar_volume_unit = 200000056

molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.

Definition at line 12664 of file cv.hpp.

UO_momentum_unit = 200000057

momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.

Definition at line 12667 of file cv.hpp.

UO_rotational_frequency_unit = 200000058

rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.

Definition at line 12670 of file cv.hpp.

UO_specific_volume_unit = 200000059

specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).

Definition at line 12673 of file cv.hpp.

UO_speed_velocity_unit = 200000060

speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.

Definition at line 12676 of file cv.hpp.

UO_unit_of_molarity = 200000061

unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.

Definition at line 12679 of file cv.hpp.

UO_molar = 200000062

molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).

Definition at line 12682 of file cv.hpp.

UO_millimolar = 200000063

millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.

Definition at line 12685 of file cv.hpp.

UO_micromolar = 200000064

micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.

Definition at line 12688 of file cv.hpp.

UO_nanomolar = 200000065

nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.

Definition at line 12691 of file cv.hpp.

UO_picomolar = 200000066

picomolar: A unit of molarity which is equal to 10^[-12] M.

Definition at line 12694 of file cv.hpp.

UO_unit_of_molality = 200000067

unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.

Definition at line 12697 of file cv.hpp.

UO_molal = 200000068

molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).

Definition at line 12700 of file cv.hpp.

UO_millimolal = 200000069

millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.

Definition at line 12703 of file cv.hpp.

UO_micromolal = 200000070

micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.

Definition at line 12706 of file cv.hpp.

UO_nanomolal = 200000071

nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.

Definition at line 12709 of file cv.hpp.

UO_picomolal = 200000072

picomolal: A molality unit which is equal to 10^[-12] m.

Definition at line 12712 of file cv.hpp.

UO_femtomolar = 200000073

femtomolar: A unit of molarity which is equal to 10^[-15] M.

Definition at line 12715 of file cv.hpp.

UO_unit_of_normality = 200000074

unit of normality: A unit of concentration which highlights the chemical nature of salts.

Definition at line 12718 of file cv.hpp.

UO_normal = 200000075

normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.

Definition at line 12721 of file cv.hpp.

UO_mole_fraction = 200000076

mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.

Definition at line 12724 of file cv.hpp.

UO_meter_per_second_per_second = 200000077

meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.

Definition at line 12727 of file cv.hpp.

UO_radian_per_second_per_second = 200000078

radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.

Definition at line 12730 of file cv.hpp.

UO_radian_per_second = 200000079

radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).

Definition at line 12733 of file cv.hpp.

UO_square_meter = 200000080

square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.

Definition at line 12736 of file cv.hpp.

UO_square_centimeter = 200000081

square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2].

Definition at line 12739 of file cv.hpp.

UO_square_millimeter = 200000082

square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].

Definition at line 12742 of file cv.hpp.

UO_kilogram_per_cubic_meter = 200000083

kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.

Definition at line 12745 of file cv.hpp.

UO_gram_per_cubic_centimeter = 200000084

gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.

Definition at line 12748 of file cv.hpp.

UO_candela_per_square_meter = 200000085

candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.

Definition at line 12751 of file cv.hpp.

UO_kilogram_per_square_meter = 200000086

kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.

Definition at line 12754 of file cv.hpp.

UO_kilogram_per_mole = 200000087

kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.

Definition at line 12757 of file cv.hpp.

UO_gram_per_mole = 200000088

gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.

Definition at line 12760 of file cv.hpp.

UO_cubic_meter_per_mole = 200000089

cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.

Definition at line 12763 of file cv.hpp.

UO_cubic_centimeter_per_mole = 200000090

cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.

Definition at line 12766 of file cv.hpp.

UO_kilogram_meter_per_second = 200000091

kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.

Definition at line 12769 of file cv.hpp.

UO_turns_per_second = 200000092

turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.

Definition at line 12772 of file cv.hpp.

UO_cubic_meter_per_kilogram = 200000093

cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.

Definition at line 12775 of file cv.hpp.

UO_meter_per_second = 200000094

meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.

Definition at line 12778 of file cv.hpp.

UO_volume_unit = 200000095

volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.

Definition at line 12781 of file cv.hpp.

UO_cubic_meter = 200000096

cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.

Definition at line 12784 of file cv.hpp.

UO_cubic_centimeter = 200000097

cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.

Definition at line 12787 of file cv.hpp.

UO_milliliter = 200000098

milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.

Definition at line 12790 of file cv.hpp.

UO_liter = 200000099

liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.

Definition at line 12793 of file cv.hpp.

UO_cubic_decimeter = 200000100

cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.

Definition at line 12796 of file cv.hpp.

UO_microliter = 200000101

microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.

Definition at line 12799 of file cv.hpp.

UO_nanoliter = 200000102

nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.

Definition at line 12802 of file cv.hpp.

UO_picoliter = 200000103

picoliter: A volume unit which is equal to 10^[-12] L.

Definition at line 12805 of file cv.hpp.

UO_femtoliter = 200000104

femtoliter: A volume unit which is equal to 10^[-15] L.

Definition at line 12808 of file cv.hpp.

UO_frequency_unit = 200000105

frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.

Definition at line 12811 of file cv.hpp.

UO_hertz = 200000106

hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.

Definition at line 12814 of file cv.hpp.

UO_force_unit = 200000107

force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.

Definition at line 12817 of file cv.hpp.

UO_newton = 200000108

newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.

Definition at line 12820 of file cv.hpp.

UO_pressure_unit = 200000109

pressure unit: A unit which is a standard measure of the force applied to a given area.

Definition at line 12823 of file cv.hpp.

UO_pascal = 200000110

pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].

Definition at line 12826 of file cv.hpp.

UO_energy_unit = 200000111

energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).

Definition at line 12829 of file cv.hpp.

Referenced by testIsA().

UO_joule = 200000112

joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.

Definition at line 12832 of file cv.hpp.

UO_power_unit = 200000113

power unit: A unit which is a standard measure power or the rate of doing work.

Definition at line 12835 of file cv.hpp.

UO_watt = 200000114

watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.

Definition at line 12838 of file cv.hpp.

UO_illuminance_unit = 200000115

illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.

Definition at line 12841 of file cv.hpp.

UO_lux = 200000116

lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].

Definition at line 12844 of file cv.hpp.

UO_luminous_flux_unit = 200000117

luminous flux unit: A unit which is a standard measure of the flow of radiant energy.

Definition at line 12847 of file cv.hpp.

UO_lumen = 200000118

lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.

Definition at line 12850 of file cv.hpp.

UO_catalytic_activity_unit = 200000119

catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.

Definition at line 12853 of file cv.hpp.

UO_katal = 200000120

katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.

Definition at line 12856 of file cv.hpp.

UO_angle_unit = 200000121

angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.

Definition at line 12859 of file cv.hpp.

UO_plane_angle_unit = 200000122

plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.

Definition at line 12862 of file cv.hpp.

UO_radian = 200000123

radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.

Definition at line 12865 of file cv.hpp.

UO_solid_angle_unit = 200000124

solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.

Definition at line 12868 of file cv.hpp.

UO_steradian = 200000125

steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.

Definition at line 12871 of file cv.hpp.

UO_radiation_unit = 200000127

radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.

Definition at line 12874 of file cv.hpp.

UO_activity__of_a_radionuclide__unit = 200000128

activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.

Definition at line 12877 of file cv.hpp.

UO_absorbed_dose_unit = 200000129

absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.

Definition at line 12880 of file cv.hpp.

UO_dose_equivalent_unit = 200000130

dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.

Definition at line 12883 of file cv.hpp.

UO_exposure_unit = 200000131

exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.

Definition at line 12886 of file cv.hpp.

UO_becquerel = 200000132

becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).

Definition at line 12889 of file cv.hpp.

UO_curie = 200000133

curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).

Definition at line 12892 of file cv.hpp.

UO_gray = 200000134

gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.

Definition at line 12895 of file cv.hpp.

UO_rad = 200000135

rad: An absorbed dose unit which is equal to 0.01 gray (Gy).

Definition at line 12898 of file cv.hpp.

UO_roentgen = 200000136

roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.

Definition at line 12901 of file cv.hpp.

UO_sievert = 200000137

sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.

Definition at line 12904 of file cv.hpp.

UO_millisievert = 200000138

millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.

Definition at line 12907 of file cv.hpp.

UO_microsievert = 200000139

microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.

Definition at line 12910 of file cv.hpp.

UO_Roentgen_equivalent_man = 200000140

Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.

Definition at line 12913 of file cv.hpp.

UO_microgray = 200000141

microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.

Definition at line 12916 of file cv.hpp.

UO_milligray = 200000142

milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.

Definition at line 12919 of file cv.hpp.

UO_nanogray = 200000143

nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.

Definition at line 12922 of file cv.hpp.

UO_nanosievert = 200000144

nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.

Definition at line 12925 of file cv.hpp.

UO_millicurie = 200000145

millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.

Definition at line 12928 of file cv.hpp.

UO_microcurie = 200000146

microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.

Definition at line 12931 of file cv.hpp.

UO_disintegrations_per_minute = 200000147

disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.

Definition at line 12934 of file cv.hpp.

UO_counts_per_minute = 200000148

counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.

Definition at line 12937 of file cv.hpp.

UO_nanosecond = 200000150

nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.

Definition at line 12940 of file cv.hpp.

UO_century = 200000151

century: A time unit which is equal to 100 years.

Definition at line 12943 of file cv.hpp.

UO_half_life = 200000152

half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.

Definition at line 12946 of file cv.hpp.

UO_foot_candle = 200000153

foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.

Definition at line 12949 of file cv.hpp.

UO_irradiance_unit = 200000154

irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.

Definition at line 12952 of file cv.hpp.

UO_watt_per_square_meter = 200000155

watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.

Definition at line 12955 of file cv.hpp.

UO_einstein_per_square_meter_per_second = 200000156

einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.

Definition at line 12958 of file cv.hpp.

UO_light_unit = 200000157

light unit: A unit which is a standard measure of the intensity of light.

Definition at line 12961 of file cv.hpp.

UO_watt_per_steradian_per_square_meter = 200000158

watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.

Definition at line 12964 of file cv.hpp.

UO_radiant_intensity_unit = 200000159

radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.

Definition at line 12967 of file cv.hpp.

UO_microeinstein_per_square_meter_per_second = 200000160

microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].

Definition at line 12970 of file cv.hpp.

UO_radiance_unit = 200000161

radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.

Definition at line 12973 of file cv.hpp.

UO_watt_per_steradian = 200000162

watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.

Definition at line 12976 of file cv.hpp.

UO_mass_percentage = 200000163

mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.

Definition at line 12979 of file cv.hpp.

UO_mass_volume_percentage = 200000164

mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.

Definition at line 12982 of file cv.hpp.

UO_volume_percentage = 200000165

volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.

Definition at line 12985 of file cv.hpp.

UO_parts_per_notation_unit = 200000166

parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.

Definition at line 12988 of file cv.hpp.

UO_parts_per_hundred = 200000167

parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.

Definition at line 12991 of file cv.hpp.

UO_parts_per_thousand = 200000168

parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.

Definition at line 12994 of file cv.hpp.

UO_parts_per_million = 200000169

parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].

Definition at line 12997 of file cv.hpp.

Referenced by testOtherRelations().

UO_parts_per_billion = 200000170

parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].

Definition at line 13000 of file cv.hpp.

UO_parts_per_trillion = 200000171

parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].

Definition at line 13003 of file cv.hpp.

UO_parts_per_quadrillion = 200000172

parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].

Definition at line 13006 of file cv.hpp.

UO_gram_per_milliliter = 200000173

gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.

Definition at line 13009 of file cv.hpp.

UO_kilogram_per_liter = 200000174

kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.

Definition at line 13012 of file cv.hpp.

UO_gram_per_liter = 200000175

gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.

Definition at line 13015 of file cv.hpp.

UO_milligram_per_milliliter = 200000176

milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.

Definition at line 13018 of file cv.hpp.

UO_unit_per_volume_unit = 200000177

unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.

Definition at line 13021 of file cv.hpp.

UO_unit_per_milliliter = 200000178

unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.

Definition at line 13024 of file cv.hpp.

UO_unit_per_liter = 200000179

unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.

Definition at line 13027 of file cv.hpp.

UO_mass_per_unit_volume = 200000180

mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).

Definition at line 13030 of file cv.hpp.

UO_enzyme_unit = 200000181

enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.

Definition at line 13033 of file cv.hpp.

UO_density_unit = 200000182

density unit: A unit which is a standard measure of the influence exerted by some mass.

Definition at line 13036 of file cv.hpp.

UO_linear_density_unit = 200000183

linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.

Definition at line 13039 of file cv.hpp.

UO_kilogram_per_meter = 200000184

kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.

Definition at line 13042 of file cv.hpp.

UO_degree = 200000185

degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.

Definition at line 13045 of file cv.hpp.

UO_dimensionless_unit = 200000186

dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.

Definition at line 13048 of file cv.hpp.

UO_percent = 200000187

percent: A dimensionless ratio unit which denotes numbers as fractions of 100.

Definition at line 13051 of file cv.hpp.

UO_pi = 200000188

pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.

Definition at line 13054 of file cv.hpp.

UO_count_unit = 200000189

count unit: A dimensionless unit which denotes a simple count of things.

Definition at line 13057 of file cv.hpp.

UO_ratio = 200000190

ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.

Definition at line 13060 of file cv.hpp.

UO_fraction = 200000191

fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).

Definition at line 13063 of file cv.hpp.

UO_molecule_count = 200000192

molecule count: A dimensionless count unit which denotes the number of molecules.

Definition at line 13066 of file cv.hpp.

UO_purity_percentage = 200000193

purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.

Definition at line 13069 of file cv.hpp.

UO_confluence_percentage = 200000194

confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).

Definition at line 13072 of file cv.hpp.

UO_degree_fahrenheit = 200000195

degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.

Definition at line 13075 of file cv.hpp.

UO_pH = 200000196

pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).

Definition at line 13078 of file cv.hpp.

UO_liter_per_kilogram = 200000197

liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.

Definition at line 13081 of file cv.hpp.

UO_milliliter_per_kilogram = 200000198

milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.

Definition at line 13084 of file cv.hpp.

UO_microliter_per_kilogram = 200000199

microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.

Definition at line 13087 of file cv.hpp.

UO_cell_concentration_unit = 200000200

cell concentration unit: A concentration unit which denotes the average cell number in a given volume.

Definition at line 13090 of file cv.hpp.

UO_cells_per_milliliter = 200000201

cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.

Definition at line 13093 of file cv.hpp.

UO_catalytic__activity__concentration_unit = 200000202

catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.

Definition at line 13096 of file cv.hpp.

UO_katal_per_cubic_meter = 200000203

katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.

Definition at line 13099 of file cv.hpp.

UO_katal_per_liter = 200000204

katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.

Definition at line 13102 of file cv.hpp.

UO_volume_per_unit_volume = 200000205

volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.

Definition at line 13105 of file cv.hpp.

UO_milliliter_per_cubic_meter = 200000206

milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.

Definition at line 13108 of file cv.hpp.

UO_milliliter_per_liter = 200000207

milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.

Definition at line 13111 of file cv.hpp.

UO_gram_per_deciliter = 200000208

gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.

Definition at line 13114 of file cv.hpp.

UO_deciliter = 200000209

deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.

Definition at line 13117 of file cv.hpp.

UO_colony_forming_unit = 200000210

colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.

Definition at line 13120 of file cv.hpp.

UO_plaque_forming_unit = 200000211

plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.

Definition at line 13123 of file cv.hpp.

UO_colony_forming_unit_per_volume = 200000212

colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.

Definition at line 13126 of file cv.hpp.

UO_colony_forming_unit_per_milliliter = 200000213

colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.

Definition at line 13129 of file cv.hpp.

UO_plaque_forming_unit_per_volume = 200000214

plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.

Definition at line 13132 of file cv.hpp.

UO_plaque_forming_unit_per_milliliter = 200000215

plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.

Definition at line 13135 of file cv.hpp.

UO_disintegrations_per_second = 200000216

disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.

Definition at line 13138 of file cv.hpp.

UO_electric_potential_difference_unit = 200000217

electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.

Definition at line 13141 of file cv.hpp.

UO_volt = 200000218

volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.

Definition at line 13144 of file cv.hpp.

UO_electric_charge = 200000219

electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.

Definition at line 13147 of file cv.hpp.

UO_coulomb = 200000220

coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.

Definition at line 13150 of file cv.hpp.

UO_dalton = 200000221

dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.

Definition at line 13153 of file cv.hpp.

Referenced by testIsA(), testParamContainer(), testSpectrumIdentificationProtocol(), and testTraData().

UO_kilodalton = 200000222

kilodalton: A mass unit which is equal to one thousand daltons.

Definition at line 13156 of file cv.hpp.

UO_watt_hour = 200000223

watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.

Definition at line 13159 of file cv.hpp.

UO_kilowatt_hour = 200000224

kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.

Definition at line 13162 of file cv.hpp.

UO_magnetic_flux_unit = 200000225

magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.

Definition at line 13165 of file cv.hpp.

UO_weber = 200000226

weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.

Definition at line 13168 of file cv.hpp.

UO_magnetic_flux_density_unit = 200000227

magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.

Definition at line 13171 of file cv.hpp.

UO_tesla = 200000228

tesla: A magnetic flux density unit which is equal to one weber per square meter.

Definition at line 13174 of file cv.hpp.

UO_volt_hour = 200000229

volt-hour: A magnetic flux unit which is equal to 3600 Wb.

Definition at line 13177 of file cv.hpp.

UO_kilovolt_hour = 200000230

kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.

Definition at line 13180 of file cv.hpp.

UO_information_unit = 200000231

information unit: A unit which is a standard measure of the amount of information.

Definition at line 13183 of file cv.hpp.

Referenced by testIDTranslation().

UO_bit = 200000232

bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).

Definition at line 13186 of file cv.hpp.

UO_byte = 200000233

byte: An information unit which is equal to 8 bits.

Definition at line 13189 of file cv.hpp.

UO_kilobyte = 200000234

kilobyte: An information unit which is equal to 1000 bytes.

Definition at line 13192 of file cv.hpp.

UO_megabyte = 200000235

megabyte: An information unit which is equal to 1000 kB.

Definition at line 13195 of file cv.hpp.

UO_image_resolution_unit = 200000236

image resolution unit: An information unit which is a standard measure of the detail an image holds.

Definition at line 13198 of file cv.hpp.

UO_chroma_sampling_unit = 200000237

chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.

Definition at line 13201 of file cv.hpp.

UO_dynamic_range_unit = 200000238

dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.

Definition at line 13204 of file cv.hpp.

UO_spatial_resolution_unit = 200000239

spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.

Definition at line 13207 of file cv.hpp.

UO_dots_per_inch = 200000240

dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.

Definition at line 13210 of file cv.hpp.

UO_micron_pixel = 200000241

micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.

Definition at line 13213 of file cv.hpp.

UO_pixels_per_inch = 200000242

pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.

Definition at line 13216 of file cv.hpp.

UO_pixels_per_millimeter = 200000243

pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.

Definition at line 13219 of file cv.hpp.

UO_base_pair = 200000244

base pair: A count unit which contains one nucleotide.

Definition at line 13222 of file cv.hpp.

UO_kibibyte = 200000245

kibibyte: An information unit which is equal to 1024 B.

Definition at line 13225 of file cv.hpp.

UO_mebibyte = 200000246

mebibyte: An information unit which is equal to 1024 KiB.

Definition at line 13228 of file cv.hpp.

UO_millivolt = 200000247

millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.

Definition at line 13231 of file cv.hpp.

UO_kilovolt = 200000248

kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.

Definition at line 13234 of file cv.hpp.

UO_microvolt = 200000249

microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.

Definition at line 13237 of file cv.hpp.

UO_nanovolt = 200000250

nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.

Definition at line 13240 of file cv.hpp.

UO_picovolt = 200000251

picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.

Definition at line 13243 of file cv.hpp.

UO_megavolt = 200000252

megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.

Definition at line 13246 of file cv.hpp.

UO_surface_tension_unit = 200000253

surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.

Definition at line 13249 of file cv.hpp.

UO_newton_per_meter = 200000254

newton per meter: A surface tension unit which is equal to one newton per meter.

Definition at line 13252 of file cv.hpp.

UO_dyne_per_cm = 200000255

dyne per cm: A surface tension unit which is equal to one dyne per centimeter.

Definition at line 13255 of file cv.hpp.

UO_viscosity_unit = 200000256

viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.

Definition at line 13258 of file cv.hpp.

UO_pascal_second = 200000257

pascal second: A viscosity unit which is equal to one pascale per second.

Definition at line 13261 of file cv.hpp.

UO_poise = 200000258

poise: A viscosity unit which is equal to one dyne second per square centimeter.

Definition at line 13264 of file cv.hpp.

UO_decibel = 200000259

decibel: An ratio unit which is an indicator of sound power per unit area.

Definition at line 13267 of file cv.hpp.

UO_effective_dose_unit = 200000260

effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.

Definition at line 13270 of file cv.hpp.

UO_conduction_unit = 200000261

conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.

Definition at line 13273 of file cv.hpp.

UO_electrical_conduction_unit = 200000262

electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).

Definition at line 13276 of file cv.hpp.

UO_heat_conduction_unit = 200000263

heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.

Definition at line 13279 of file cv.hpp.

UO_siemens = 200000264

siemens: An electrical conduction unit which is equal to A/V.

Definition at line 13282 of file cv.hpp.

UO_watt_per_meter_kelvin = 200000265

watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.

Definition at line 13285 of file cv.hpp.

UO_electronvolt = 200000266

electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.

Definition at line 13288 of file cv.hpp.

Referenced by initializeTestData(), test(), testIsChildOf(), and testSpectrum().

UO_electric_field_strength_unit = 200000267

electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.

Definition at line 13291 of file cv.hpp.

UO_volt_per_meter = 200000268

volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.

Definition at line 13294 of file cv.hpp.

UO_absorbance_unit = 200000269

absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.

Definition at line 13297 of file cv.hpp.

UO_volumetric_flow_rate_unit = 200000270

volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .

Definition at line 13300 of file cv.hpp.

UO_microliters_per_minute = 200000271

microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.

Definition at line 13303 of file cv.hpp.

UO_millimetres_of_mercury = 200000272

millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.

Definition at line 13306 of file cv.hpp.

UO_milligram_per_liter = 200000273

milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.

Definition at line 13309 of file cv.hpp.

UO_microgram_per_milliliter = 200000274

microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.

Definition at line 13312 of file cv.hpp.

UO_nanogram_per_milliliter = 200000275

nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.

Definition at line 13315 of file cv.hpp.

UO_amount_per_container = 200000276

amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.

Definition at line 13318 of file cv.hpp.

UO_ug_disk = 200000277

ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.

Definition at line 13321 of file cv.hpp.

UO_nmole_disk = 200000278

nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.

Definition at line 13324 of file cv.hpp.

UO_milliunits_per_milliliter = 200000279

milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.

Definition at line 13327 of file cv.hpp.

UO_rate_unit = 200000280

rate unit: A unit which represents a standard measurement occurrence of a process per unit time.

Definition at line 13330 of file cv.hpp.

UO_count_per_nanomolar_second = 200000281

count per nanomolar second: A rate unit which is equal to one over one nanomolar second.

Definition at line 13333 of file cv.hpp.

UO_count_per_molar_second = 200000282

count per molar second: A rate unit which is equal to one over one molar second.

Definition at line 13336 of file cv.hpp.

UO_kilogram_per_hectare = 200000283

kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares..

Definition at line 13339 of file cv.hpp.

UO_count_per_nanomolar = 200000284

count per nanomolar: A rate unit which is equal to one over one nanomolar.

Definition at line 13342 of file cv.hpp.

UO_count_per_molar = 200000285

count per molar: A rate unit which is equal to one over one molar.

Definition at line 13345 of file cv.hpp.