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- a -
addHit() :
FoundProteinFunctor
- c -
calculateCorrelation() :
TOPPMetaProSIP
calculateDecompositionWeightsIsotopicPatterns() :
MetaProSIPDecomposition
calculateGlobalLR() :
TOPPMetaProSIP
calculateIsotopePatternsFor13CRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor13CRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRangeOfAveraginePeptide() :
MetaProSIPDecomposition
checkRDependencies() :
RIntegration
clusterSIPPeptides() :
MetaProSIPClustering
computeBinnedCoverage() :
OpenSwathWorkflow
computeHyperScore() :
SimpleSearchEngine
copyBatchTransitions_() :
OpenSwathWorkflow
correlateXICsToMono() :
MetaProSIPXICExtraction
createBinnedPeptideRIAData_() :
MetaProSIPReporting
createCSVReport() :
MetaProSIPReporting
createPeptideCentricCSVReport() :
MetaProSIPReporting
createQualityReport() :
MetaProSIPReporting
- d -
deisotopeAndSingleChargeMSSpectrum() :
SimpleSearchEngine
- e -
extractIncorporationsAtCorrelationMaxima() :
TOPPMetaProSIP
extractIncorporationsAtHeighestDecompositionWeights() :
TOPPMetaProSIP
extractIsotopicIntensities() :
TOPPMetaProSIP
extractMarkerIons() :
MarkerIonExtractor
extractPeakSpectrum() :
TOPPMetaProSIP
extractXICs() :
MetaProSIPXICExtraction
extractXICsOfIsotopeTraces() :
MetaProSIPXICExtraction
- f -
filterIsotopicIntensities() :
TOPPMetaProSIP
findApexRT() :
TOPPMetaProSIP
FoundProteinFunctor() :
FoundProteinFunctor
- g -
getArchAsString() :
OpenMSOSInfo
getBestRateScorePair() :
TOPPMetaProSIP
getHighPoints() :
MetaProSIPInterpolation
getModifications_() :
SimpleSearchEngine
getNumberOfLabelingElements() :
MetaProSIPDecomposition
getOSAsString() :
OpenMSOSInfo
getRIAClusterCenter() :
MetaProSIPClustering
getString() :
RNPxlReportRow
,
RNPxlReportRowHeader
- h -
HasInvalidPeptideLengthPredicate() :
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
- i -
isActive() :
OpenSwathTSVWriter
isotopicIntensitiesToSpectrum() :
TOPPMetaProSIP
- l -
logfactorial() :
SimpleSearchEngine
- m -
main_() :
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPRNPxl
mergeSpectra() :
TOPPMetaProSIP
- n -
normalizeToMax() :
TOPPMetaProSIP
- o -
OpenMSOSInfo() :
OpenMSOSInfo
OpenSwathTSVWriter() :
OpenSwathTSVWriter
OpenSwathWorkflow() :
OpenSwathWorkflow
operator!=() :
FoundProteinFunctor
operator()() :
RIALess
,
FoundProteinFunctor
,
SequenceLess
,
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
,
SizeLess
operator<() :
PeptideProteinMatchInformation
operator==() :
PeptideProteinMatchInformation
,
FoundProteinFunctor
- p -
performExtraction() :
OpenSwathWorkflow
performRTNormalization() :
OpenSwathWorkflow
plotFilteredSpectra() :
MetaProSIPReporting
plotHeatMap() :
MetaProSIPReporting
plotScoresAndWeights() :
MetaProSIPReporting
postProcessHits_() :
SimpleSearchEngine
prepare_coordinates() :
OpenSwathWorkflow
prepare_coordinates_wrap() :
OpenSwathWorkflow
prepareLine() :
OpenSwathTSVWriter
preprocessSpectra_() :
SimpleSearchEngine
- r -
registerOptionsAndFlags_() :
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPRNPxl
RTNormalization() :
OpenSwathWorkflow
- s -
scoreAllChromatograms() :
OpenSwathWorkflow
selectChrom_() :
OpenSwathWorkflow
selectPeptidesForBatch_() :
OpenSwathWorkflow
simpleExtractChromatograms() :
OpenSwathWorkflow
SimpleSearchEngine() :
SimpleSearchEngine
- t -
TOPPMetaProSIP() :
TOPPMetaProSIP
TOPPRNPxl() :
TOPPRNPxl
- w -
writeHeader() :
OpenSwathTSVWriter
writeHTML() :
MetaProSIPReporting
writeLines() :
OpenSwathTSVWriter
writePeakIntensities_() :
TOPPMetaProSIP
OpenMS / TOPP release 2.0.0
Documentation generated on Thu Feb 18 2016 02:35:17 using doxygen 1.8.10