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Data Fields
t_iso Struct Reference

#include <iso.h>

Collaboration diagram for t_iso:
Collaboration graph
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Data Fields

bool lgPrintNumberOfLevels
const char * chISO [NISO]
multi_arr< realnum, 4 > strkar
multi_arr< double, 4 > pestrk
multi_arr< long, 5 > QuantumNumbers2Index
long int nLyman [NISO]
long int nLyman_malloc [NISO]
multi_arr< long int, 3 > ipIsoLevNIonCon
multi_arr< double, 3 > xIsoLevNIonRyd
double xIonSimple [NISO][LIMELM]
bool lgColl_l_mixing [NISO]
bool lgColl_excite [NISO]
bool lgColl_ionize [NISO]
bool lgPrtDepartCoef [NISO][LIMELM]
bool lgPrtLevelPops [NISO][LIMELM]
bool lgCollStrenThermAver
bool lgInd2nu_On
bool lgLevelsLowered [NISO][LIMELM]
bool lgLevelsEverLowered [NISO][LIMELM]
long int nCollapsed_max [NISO][LIMELM]
long int nCollapsed_local [NISO][LIMELM]
long int numLevels_max [NISO][LIMELM]
long int numLevels_local [NISO][LIMELM]
long int numLevels_malloc [NISO][LIMELM]
long int n_HighestResolved_max [NISO][LIMELM]
long int n_HighestResolved_local [NISO][LIMELM]
long int numPrintLevels [NISO][LIMELM]
realnum stat_ion [NISO]
double TwoNu_induc_up [NISO][LIMELM]
double TwoNu_induc_dn [NISO][LIMELM]
double TwoNu_induc_dn_max [NISO][LIMELM]
multi_arr< double, 4 > RadRecomb
bool lgDielRecom [NISO]
multi_arr< double, 3 > DielecRecomb
multi_arr< double, 4 > DielecRecombVsTemp
realnum CaseBCheck [NISO][LIMELM]
double RadRec_caseB [NISO][LIMELM]
double RadRec_effec [NISO][LIMELM]
multi_arr< double, 3 > RateLevel2Cont
multi_arr< double, 3 > RateCont2Level
double RecomCollisFrac [NISO][LIMELM]
multi_arr< long int, 3 > ipOpac
multi_arr< realnum, 3 > ConOpacRatio
multi_arr< double, 3 > DepartCoef
bool lgPopLTE_OK [NISO][LIMELM]
multi_arr< double, 3 > PopLTE
multi_arr< double, 3 > ColIoniz
double pop_ion_ov_neut [NISO][LIMELM]
double FreeBnd_net_Cool_Rate [NISO][LIMELM]
double coll_ion [NISO][LIMELM]
double cRest_cool [NISO][LIMELM]
double xLineTotCool [NISO][LIMELM]
double dLTot [NISO][LIMELM]
double RadRecCool [NISO][LIMELM]
double cBal_cool [NISO][LIMELM]
double cLyrest_cool [NISO][LIMELM]
double cLya_cool [NISO][LIMELM]
multi_arr< double, 3 > gamnc
multi_arr< double, 3 > RecomInducRate
multi_arr< double, 3 > RecomInducCool_Coef
double RecomInducCool_Rate [NISO][LIMELM]
multi_arr< double, 4 > Boltzmann
multi_arr< double, 3 > PhotoHeat
realnum SmallA
multi_arr< long int, 3 > ipSym2nu
multi_arr< realnum, 3 > As2nu
long ipTwoPhoE [NISO][LIMELM]
long ipHalfTwoPhoE [NISO][LIMELM]
int ipLyaRedist [NISO]
int ipResoRedist [NISO]
int ipSubRedist [NISO]
int nLyaLevel [NISO]
char chTypeAtomSet [NISO][10]
char chTypeAtomUsed [NISO][LIMELM][10]
long int nCS [NISO]
bool lgCompileRecomb [NISO]
bool lgNoRecombInterp [NISO]
bool lgCS_Vriens [NISO]
bool lgCS_None [NISO]
bool lgCS_Vrinceanu [NISO]
bool lgCS_therm_ave [NISO]
int nCS_new [NISO]
bool lgCritDensLMix [NISO]
bool lgFSM [NISO]
multi_arr< double, 3 > SigmaAtot
multi_arr< realnum, 5 > HeCS
double CSTemp [NISO][HE1CSARRAY]
bool lgRandErrGen [NISO]
bool lgErrGenDone [NISO][LIMELM]
bool lgTopoff [NISO]
int modelRank [NISO]
multi_arr< realnum, 5 > Error
multi_arr< realnum, 5 > ErrorFactor
double qTot2S [NISO][LIMELM]
multi_arr< double, 4 > BranchRatio
multi_arr< double, 4 > CascadeProb
multi_arr< double, 4 > SigmaCascadeProb
multi_arr< double, 3 > RadEffec
multi_arr< double, 3 > SigmaRadEffec
multi_arr< realnum, 5 > CachedAs
multi_arr< double, 5 > bnl_effective

Detailed Description

Definition at line 226 of file iso.h.


Field Documentation

will become array of two photon transition probabilities per energy bin

Definition at line 454 of file iso.h.

Referenced by atmdat_2phot_rate(), ContCreatePointers(), PunchSpecial(), and RT_diffuse().

Boltzmann factor from lower to upper level, [ISO][nelem][up][lo]

Definition at line 437 of file iso.h.

Referenced by iso_allocate(), iso_collide(), iso_cool(), iso_level(), and lines_helium().

total brancing ratio and standard deviation in it

Definition at line 547 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), iso_radiative_recomb_effective(), lines_helium(), and SanityCheckBegin().

Definition at line 552 of file iso.h.

Referenced by helike_transprob(), hydro_transprob(), iso_allocate(), and iso_collapsed_Aul_update().

Definition at line 547 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), iso_radiative_recomb_effective(), and lines_helium().

difference between actual case b photons in rtdiffuse, and correct case b

Definition at line 349 of file iso.h.

Referenced by PrtComment(), RT_diffuse(), and zero().

net cooling due to collisional excit of balmer lines

Definition at line 409 of file iso.h.

Referenced by iso_cool(), and lines_hydro().

const char* t_iso::chISO[NISO]

flag to set which type of solution to do for level pops, low T or pops

Definition at line 468 of file iso.h.

Referenced by iso_level(), ParseAtomISO(), and zero().

flag to set which type of solution was used for level pops, low T or pops

Definition at line 470 of file iso.h.

Referenced by HydroLevel(), IonHelium(), iso_level(), radius_increment(), and zero().

net cooling due to collisional excit of Lya

Definition at line 415 of file iso.h.

Referenced by CoolEvaluate(), iso_cool(), and lines_hydro().

net cooling due to collisional excit of higher lyman lines

Definition at line 412 of file iso.h.

Referenced by iso_cool(), and lines_hydro().

collisional ionization rate coefficient from each level (cm3 s-1)

Definition at line 384 of file iso.h.

Referenced by HydroLevel(), iso_allocate(), iso_collide(), iso_collisional_ionization(), iso_cool(), iso_ionize_recombine(), iso_level(), iso_zero(), PrtHydroTrace1a(), and PunchDo().

net cooling due to collisional ionization

Definition at line 394 of file iso.h.

Referenced by CoolEvaluate(), iso_cool(), and lines_hydro().

continuum to total opacity factors for each level

Definition at line 372 of file iso.h.

Referenced by iso_allocate(), iso_radiative_recomb(), iso_zero(), IterRestart(), IterStart(), and OpacityAddTotal().

net cooling due to collisional excit of higher lines

Definition at line 397 of file iso.h.

Referenced by iso_cool(), and lines_hydro().

vector of temperatures corresponding to collision strengths stuffed into HeCS.

Definition at line 515 of file iso.h.

Referenced by AtomCSInterp(), and HeCollidSetup().

state specific dielectronic recombination rates, DielecRecomb[ipISO][ipZ][n] iso.DielecRecomb[ipISO][ipZ][ipLo] rate coef, cm^3 s^-1

Definition at line 342 of file iso.h.

Referenced by DoSatelliteLines(), iso_allocate(), iso_ionize_recombine(), iso_radiative_recomb(), iso_satellite_update(), and iso_zero().

state specific dielectronic recombination rates as a function of temperature iso.DielecRecombVsTemp[ipISO][ipZ][ipLo][Temp] rate coef, cm^3 s^-1

Definition at line 346 of file iso.h.

Referenced by Badnell_rec_init(), iso_allocate(), and iso_dielec_recomb_rate().

deriv of net cooling due to total collisional excit of lines

Definition at line 403 of file iso.h.

Referenced by iso_cool().

This is the array in which uncertainties are stored if iso.lgRandErrGen[NISO] is set.

Definition at line 537 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), iso_error_generation(), iso_put_error(), and iso_radiative_recomb_effective().

This is the array in which gaussian errors are generated, using the values in the Error array above as the standard deviations

Definition at line 541 of file iso.h.

Referenced by iso_allocate(), iso_error_generation(), iso_level(), iso_radiative_recomb(), and lines_helium().

net free bound cooling for this element

Definition at line 391 of file iso.h.

Referenced by iso_cool(), and lines_general().

photoionization rate, gammnc[iso][nelem][level]

Definition at line 418 of file iso.h.

Referenced by hmole_step(), HydroLevel(), HydroT2Low(), iso_allocate(), iso_cool(), iso_ionize_recombine(), iso_level(), iso_photo(), iso_zero(), PrtComment(), PrtHydroTrace1a(), and PunchDo().

array of collision strengths read from data file...this is interpolated upon.

Definition at line 512 of file iso.h.

Referenced by AtomCSInterp(), and HeCollidSetup().

Definition at line 459 of file iso.h.

Referenced by atmdat_2phot_rate(), and ContCreatePointers().

types of redistribution functions for Lya, other resonances, and subordinate lines

Definition at line 462 of file iso.h.

Referenced by iso_create(), ParseAtomISO(), and zero().

multi_arr<long int,3> t_iso::ipOpac

ipOpac pointers for photoionization cross sections of hydrogen iso.ipOpac[NISO][LIMELM][NHPLPHOT]

Definition at line 369 of file iso.h.

Referenced by iso_allocate(), iso_photo(), OpacityAdd1Element(), OpacityAddTotal(), OpacityCreateAll(), punch_opacity(), PunchDo(), RT_diffuse(), and SanityCheckBegin().

Definition at line 462 of file iso.h.

Referenced by FillExtraLymanLine(), iso_create(), ParseAtomISO(), and zero().

Definition at line 462 of file iso.h.

Referenced by iso_create(), ParseAtomISO(), and zero().

will become array of indices for induced two photon, series of symmetric indices ipHy2nu[ipISO][ipZ][energy]

Definition at line 451 of file iso.h.

Referenced by atmdat_2phot_rate(), ContCreatePointers(), and RT_diffuse().

These are pointers to the energies representing the two-photon gap, and half the gap, respectively.

Definition at line 458 of file iso.h.

Referenced by atmdat_2phot_rate(), ContCreatePointers(), and RT_diffuse().

option to turn off collisional excitation

Definition at line 264 of file iso.h.

Referenced by AtomCSInterp(), HeCSInterp(), IonCSInterp(), iso_collide(), iso_level(), ParseAtomISO(), and zero().

option to turn off collisional ionization

Definition at line 267 of file iso.h.

Referenced by iso_collisional_ionization(), iso_ionize_recombine(), ParseAtomISO(), and zero().

option to turn off l-mixing collisions

Definition at line 261 of file iso.h.

Referenced by AtomCSInterp(), IonCSInterp(), iso_collide(), ParseAtomISO(), and zero().

do thermal average of collision strenghts if true, false by default, set true with SET COLLISION STRENGTHS AVERAGE command

Definition at line 277 of file iso.h.

Referenced by CS_VS80(), ParseSet(), and zero().

flag set by compile he-like command, says to regenerate table of recombination coef

Definition at line 487 of file iso.h.

Referenced by InitSimPostparse(), iso_recomb_setup(), ParseCompile(), and zero().

used to print warning if density too low for first collapsed level to be l-mixed

Definition at line 502 of file iso.h.

Referenced by iso_level(), PrtComment(), and zero().

Definition at line 495 of file iso.h.

Referenced by ParseAtomISO(), and zero().

Definition at line 495 of file iso.h.

Referenced by CS_l_mixing_VF01(), CS_ThermAve_PR78(), ParseAtomISO(), and zero().

parameters for changing gbar - set with set hegbar command

Definition at line 495 of file iso.h.

Referenced by HeCSInterp(), IonCSInterp(), ParseAtomISO(), and zero().

Definition at line 495 of file iso.h.

Referenced by HydroCSInterp(), IonCSInterp(), ParseAtomISO(), and zero().

this is flag saying that random gaussians have already been set...they should only be done once per model, and this must be reset to false at the beginning of each model.

Definition at line 523 of file iso.h.

Referenced by iso_error_generation(), iso_solve(), and zero().

flag saying whether to include fine-structure mixing in spontaneous decays set with ATOM HE-LIKE FSM command

Definition at line 506 of file iso.h.

Referenced by iso_create(), lines_helium(), ParseAtomISO(), and zero().

flag saying whether induced two photon is included in the level pops for H- and He-like

Definition at line 281 of file iso.h.

Referenced by iso_level(), ParseSet(), RT_diffuse(), and zero().

This variable is set to true if the continuum was lowered at any point in the calculation. Necessary because some models will lowered continuum at intermediate points but not last zone.

Definition at line 289 of file iso.h.

Referenced by iso_continuum_lower(), PrtComment(), and zero().

true if the model is full size in the sense that all levels below continuum are considered.

Definition at line 285 of file iso.h.

Referenced by iso_collisional_ionization(), iso_continuum_lower(), iso_radiative_recomb(), PrtComment(), and zero().

flag set by atom he-like no recomb interp command, says to generate recombination coefficients on the fly

Definition at line 492 of file iso.h.

Referenced by iso_radiative_recomb(), iso_recomb_setup(), iso_RRCoef_Te(), ParseAtomISO(), SanityCheckBegin(), and zero().

true is all lte populations positive for Hydrogenic atoms

Definition at line 378 of file iso.h.

Referenced by iso_collide().

Definition at line 228 of file iso.h.

Referenced by InitSimPostparse(), ParseAtomISO(), and zero().

option to print departure coefficients

Definition at line 270 of file iso.h.

Referenced by ParsePrint(), PrtZone(), and zero().

option to print level populations

Definition at line 273 of file iso.h.

Referenced by ParsePrint(), PrtZone(), and zero().

This flag is set to true if the rates should be treated with a randomly generated error, on the range specifically set for each rate, before being entered into the rate matrix.

Definition at line 519 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), iso_level(), iso_put_error(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_solve(), lines_helium(), ParseAtomISO(), and zero().

Definition at line 525 of file iso.h.

Referenced by iso_radiative_recomb(), ParseAtomISO(), and zero().

This is the used to set a unique seed in parallel gaussian runs

Definition at line 528 of file iso.h.

Referenced by ParseAtomISO().

the local (pressure lowered) version of the above

Definition at line 312 of file iso.h.

Referenced by InitSimPostparse(), iso_continuum_lower(), iso_level(), iso_prt_pops(), iso_update_num_levels(), lines_hydro(), PrtAllTau(), PrtComment(), and PrtHeader().

long int t_iso::nCS[NISO]

all of these are initialized in zero number of CS in the above array

Definition at line 484 of file iso.h.

Referenced by AtomCSInterp(), and HeCollidSetup().

Definition at line 499 of file iso.h.

Referenced by ParseAtomISO(), and zero().

this is the upper level for Lya

Definition at line 465 of file iso.h.

Referenced by ConvIterCheck(), FillExtraLymanLine(), iso_collide(), iso_cool(), iso_create(), iso_level(), iso_solve(), RT_line_all(), RT_stark(), RT_tau_reset(), and zero().

long int t_iso::nLyman[NISO]

number of Lyman lines to include only as opacity sources, in each iso seq, all now set to 100 in zero.c

Definition at line 245 of file iso.h.

Referenced by ContCreatePointers(), iso_allocate(), iso_continuum_lower(), iso_create(), iso_zero(), ParseAtomISO(), PunchLineStuff(), RT_line_all(), RT_tau_inc(), RT_tau_init(), RT_tau_reset(), and zero().

number of levels actually malloced - probably greater than above

Definition at line 245 of file iso.h.

Referenced by iso_allocate(), state_get_put(), and zero().

number of levels malloc'd in the core load, can't go over that later in later sims can lower number of levels but not raise them

Definition at line 307 of file iso.h.

Referenced by InitCoreload(), iso_allocate(), and iso_update_num_levels().

total number of levels to print

Definition at line 315 of file iso.h.

Referenced by DoSatelliteLines(), InitCoreload(), iso_continuum_lower(), iso_update_num_levels(), lgCheckAsserts(), lines_helium(), lines_hydro(), and PrtZone().

Definition at line 234 of file iso.h.

Referenced by iso_allocate(), iso_create(), lines_hydro(), PrtHydroTrace1(), RT_line_all(), and RT_stark().

photoelectric heating rate

Definition at line 440 of file iso.h.

Referenced by iso_allocate(), iso_cool(), and iso_photo().

the ratio of ion to recombined species, for H-like and He-like ions of the heavy elements

Definition at line 388 of file iso.h.

Referenced by HydroLevel(), HydroT2Low(), ion_solver(), IonHelium(), iso_level(), iso_solve(), and radius_increment().

hlte is lte population of each level, cm^3

Definition at line 381 of file iso.h.

Referenced by HydroLevel(), HydroT2Low(), iso_allocate(), iso_collide(), iso_cool(), iso_ionize_recombine(), iso_level(), iso_zero(), and IterStart().

the effective collisional rate from 2S, for h-like and he-like sequences

Definition at line 544 of file iso.h.

Referenced by iso_level(), and lines_helium().

Find index given quantum numbers Since separate j levels within a triplet term are only resolved in the case of 2tripP, allocating memory for a j dimension is unwarranted. Instead iso.QuantumNumbers2Index[ipISO][nelem][2][1][1] will point to 2^3P2, with 2^3P0 and 2^3P1 easily accessed by subtracting 2 and 1 respectively from the returned index.

Definition at line 241 of file iso.h.

Referenced by Badnell_rec_init(), chkCaHeps(), collision_strength_VF01(), DoFSMixing(), he_1trans(), iso_allocate(), iso_assign_quantum_numbers(), iso_collapsed_Aul_update(), iso_level(), iso_prt_pops(), lines_helium(), lines_hydro(), PrtAllTau(), PrtHeader(), RT_tau_init(), and SanityCheckBegin().

effective recombination and standard deviation in it

Definition at line 550 of file iso.h.

Referenced by iso_allocate(), and iso_radiative_recomb_effective().

case b recombination rate coefficient

Definition at line 352 of file iso.h.

Referenced by HydroT2Low(), iso_radiative_recomb(), lines_helium(), lines_hydro(), PunchDo(), radius_first(), RT_diffuse(), and zero().

the total effective radiative recombination rate coefficient (cm3 s-1), radiative rate with correction for absorption and ionization

Definition at line 356 of file iso.h.

Referenced by HydroLevel(), iso_radiative_recomb(), and PrtHydroTrace1a().

net cooling due to rad rec

Definition at line 406 of file iso.h.

Referenced by iso_cool(), and lines_general().

radiative recombination rate coefficient, RadRecomb[ipISO][ipZ][n][fcn] iso.RadRecomb[ipISO][ipZ][ipLo][ipRecEsc] escape prob iso.RadRecomb[ipISO][ipZ][n][ipRecNetEsc] net escape prob, accounting for absorption iso.RadRecomb[ipISO][ipZ][ipLo][ipRecRad] rate coef, cm^3 s^-1

Definition at line 335 of file iso.h.

Referenced by HydroRecCool(), iso_allocate(), iso_cool(), iso_ionize_recombine(), iso_radiative_recomb(), iso_radiative_recomb_effective(), iso_zero(), IterStart(), lines_continuum(), PunchDo(), RT_diffuse(), and RT_OTS().

all processes from the continuum to level n, units s-1

Definition at line 362 of file iso.h.

Referenced by HydroLevel(), HydroT2Low(), iso_allocate(), iso_ionize_recombine(), iso_level(), and iso_zero().

all processes from level n to the continuum, units s-1

Definition at line 359 of file iso.h.

Referenced by HydroLevel(), HydroT2Low(), IonHelium(), iso_allocate(), iso_ionize_recombine(), iso_level(), and iso_zero().

ratio of collisional recombination rate to recom from all processes

Definition at line 365 of file iso.h.

Referenced by ConvTempEdenIoniz(), iso_ionize_recombine(), and radius_next().

RecomInducCool_Coef becomes rate coef for incuded recombination cooling, when multipled by lte population. this times hnu-hnuo0 to get cooling, evaluated in gamma routine and saved

Definition at line 431 of file iso.h.

Referenced by iso_allocate(), iso_cool(), and iso_photo().

the actual induced recom cooling rate, erg cm-3 s-1

Definition at line 434 of file iso.h.

Referenced by iso_cool(), lines(), and lines_general().

RecomInducRate will become induced recombination rate coefficient when multipled by lte population. integral of photorate times exp(-hu/kt) for ind rec, produced by gamma routine needs to be mult by lte pop to become real rate

Definition at line 425 of file iso.h.

Referenced by HydroLevel(), iso_allocate(), iso_cool(), iso_ionize_recombine(), iso_photo(), iso_zero(), and IterStart().

error in sum of As.

Definition at line 509 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), and iso_radiative_recomb_effective().

Definition at line 547 of file iso.h.

Referenced by iso_allocate(), iso_cascade(), and iso_radiative_recomb_effective().

Definition at line 550 of file iso.h.

Referenced by iso_allocate(), and iso_radiative_recomb_effective().

this is the rate for the Aul given to bogus transitions, set to 1e-30 in zero >>chng 04 may 17, esd 1e-20, changed to 1e-30 to allow rydberg levels to be treated with their small As

Definition at line 446 of file iso.h.

Referenced by ContCreatePointers(), ForbiddenAuls(), he_1trans(), HydroRenorm(), HydroT2Low(), iso_cascade(), iso_collapsed_lifetimes_update(), iso_create(), iso_level(), iso_satellite_update(), iso_solve(), IterStart(), lines_hydro(), PresTotCurrent(), PrtComment(), PrtLinePres(), PunchLineStuff(), RT_tau_init(), and zero().

statistical weight of the ground state of the parent ions for each species, used for Milne relation and recombination

Definition at line 319 of file iso.h.

Referenced by iso_collide(), iso_create(), iso_satellite_update(), and RT_diffuse().

arrays for stark broadening in Puetter formalism

Definition at line 233 of file iso.h.

Referenced by iso_allocate(), iso_create(), and RT_stark().

the induced downward two-photon rate

Definition at line 325 of file iso.h.

Referenced by atmdat_2phot_rate(), iso_level(), lines_helium(), and lines_hydro().

the largest induced downward two photon rate

Definition at line 328 of file iso.h.

Referenced by atmdat_2phot_rate(), IterStart(), PrtComment(), and zero().

the induced upward two-photon rate

Definition at line 322 of file iso.h.

Referenced by atmdat_2phot_rate(), and iso_level().

the ratio fully stripped ion to atom for all hydrogenic species HIonSimple is simple estimate, should agree at low density

Definition at line 258 of file iso.h.

Referenced by HydroLevel(), HydroT2Low(), IonHelium(), iso_ionize_recombine(), iso_level(), iso_solve(), PrtHydroTrace1a(), and radius_increment().

net cooling due to total collisional excit of lines

Definition at line 400 of file iso.h.

Referenced by iso_cool(), and lines_hydro().


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